Rroxscaffold_2G00153330

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001272
Physical Location & Seq
Reverse (-)
90106498 .. 90109955
3458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153330.1

Sequence Viewer

Length: 450 bp
ATGGATTTGATAGTGCACAGTCTATACAGCCACAAGAAGGTGTTCCTTAGGGAACGTGTTAGTAATGCAAGTGATGCTTTGGACAAGTTGAGATTTTTGAGTGTGACTGAGCCCTCGCTGCTTGGAGATGCTGTTGAACTGCAGATACGCATCAAACCCGACCCAGAGAATGGGACTATCACTATAACGGATACTGGTATTGGGATGACGAAGGAGGAACTCATTGACTGCCTTGGTACCATTGCTCAGAGTGGTACTTCAAAATTCTTGACGGCACTGAAGGAAAATAAGGATCTTGGTGCAGACAACGGTTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCTCTTCTTGTTGCTGACAAGGTGCAGTTCTTCATACCCAGAAAACTACGAAACATGCATGAACTTCTTCCAAGTTCTCAGAAGTTTGTTTCAAGTGTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

149

Amino Acids

16.41

Weight (kDa)

6.83

Isoelectric Point (pI)

27.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c PF02518 16 - 114 5.5e-06 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3 PF13589 42 - 124 1.9e-07 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 170
AclWI GGATC 1 cut(s) 300
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 2 cut(s) 238, 256
AfiI CCNNNNNNNGG 2 cut(s) 37, 170
AflIII ACRYGT 1 cut(s) 55
AgsI TTSAA 3 cut(s) 137, 261, 438
Alw21I GWGCWC 1 cut(s) 18
Alw44I GTGCAC 1 cut(s) 14
AlwI GGATC 1 cut(s) 300
ApaLI GTGCAC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 1 cut(s) 263
Asp700I GAANNNNTTC 2 cut(s) 41, 411
Asp718I GGTACC 1 cut(s) 236
AxyI CCTNAGG 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 18
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 105
BceAI ACGGC 1 cut(s) 288
BciVI GTATCC 1 cut(s) 184
BfmI CTRYAG 1 cut(s) 140
BfuI GTATCC 1 cut(s) 184
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 238
BmsI GCATC 3 cut(s) 64, 118, 159
BsaBI GATNNNNATC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 170
Bse1I ACTGG 1 cut(s) 199
Bse21I CCTNAGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 240
Bse8I GATNNNNATC 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 210
BseJI GATNNNNATC 1 cut(s) 149
BseLI CCNNNNNNNGG 2 cut(s) 37, 170
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 3 cut(s) 99, 260, 437
BseNI ACTGG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 1 cut(s) 105
BsgI GTGCAG 2 cut(s) 321, 389
BshNI GGYRCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 18
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 2 cut(s) 37, 170
BsmFI GGGAC 1 cut(s) 187
Bsp1286I GDGCHC 2 cut(s) 18, 114
Bsp143I GATC 1 cut(s) 292
BspCNI CTCAG 3 cut(s) 100, 259, 436
BspLI GGNNCC 1 cut(s) 238
BspMAI CTGCAG 1 cut(s) 144
BspPI GGATC 1 cut(s) 300
BspQI GCTCTTC 1 cut(s) 354
BspT107I GGYRCC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 240
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 1 cut(s) 292
BssT1I CCWWGG 1 cut(s) 232
Bst4CI ACNGT 2 cut(s) 20, 311
Bst6I CTCTTC 1 cut(s) 354
BstAPI GCANNNNNTGC 1 cut(s) 74
BstDEI CTNAG 4 cut(s) 47, 108, 246, 423
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 2 cut(s) 74, 118
BstNSI RCATGY 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 140
BstSLI GKGCMC 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
Bsu36I CCTNAGG 1 cut(s) 47
BsuI GTATCC 1 cut(s) 184
BtsCI GGATG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 275
Csp6I GTAC 2 cut(s) 237, 255
CviAII CATG 2 cut(s) 400, 404
CviJI RGCY 2 cut(s) 30, 112
CviKI_1 RGCY 2 cut(s) 30, 112
CviQI GTAC 2 cut(s) 237, 255
DdeI CTNAG 4 cut(s) 47, 108, 246, 423
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 299
Eco81I CCTNAGG 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 232
EcoT22I ATGCAT 1 cut(s) 405
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 2 cut(s) 403, 407
FaiI YATR 5 cut(s) 25, 185, 380, 401, 405
FalI AAGNNNNNCTT 2 cut(s) 61, 93
FaqI GGGAC 1 cut(s) 187
FatI CATG 2 cut(s) 399, 403
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 217
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 119
Hin1II CATG 2 cut(s) 403, 407
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 249, 426
Hpy188III TCNNGA 1 cut(s) 268
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 3 cut(s) 31, 205, 274
HpyCH4III ACNGT 2 cut(s) 20, 311
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 6 cut(s) 16, 68, 142, 302, 370, 403
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 118
HpyF3I CTNAG 4 cut(s) 47, 108, 246, 423
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 2 cut(s) 403, 407
KpnI GGTACC 1 cut(s) 240
Kzo9I GATC 1 cut(s) 292
LguI GCTCTTC 1 cut(s) 354
LpnPI CCDG 3 cut(s) 177, 180, 397
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 3 cut(s) 64, 118, 159
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 103
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 3 cut(s) 341, 367, 404
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 2 cut(s) 18, 114
MluCI AATT 2 cut(s) 263, 323
MnlI CCTC 2 cut(s) 124, 208
Mph1103I ATGCAT 1 cut(s) 405
MroXI GAANNNNTTC 2 cut(s) 41, 411
MseI TTAA 1 cut(s) 444
MwoI GCNNNNNNNGC 2 cut(s) 74, 118
NdeII GATC 1 cut(s) 292
NlaIII CATG 2 cut(s) 403, 407
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 1 cut(s) 103
NsiI ATGCAT 1 cut(s) 405
NspI RCATGY 1 cut(s) 403
PciSI GCTCTTC 1 cut(s) 354
PdmI GAANNNNTTC 2 cut(s) 41, 411
PflMI CCANNNNNTGG 1 cut(s) 170
PkrI GCNGC 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 238
PsrI GAACNNNNNNTAC 2 cut(s) 129, 161
PstI CTGCAG 1 cut(s) 144
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 2 cut(s) 238, 256
RsaNI GTAC 2 cut(s) 237, 255
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 1 cut(s) 292
SduI GDGCHC 2 cut(s) 18, 114
SetI ASST 3 cut(s) 42, 58, 369
SfaNI GCATC 3 cut(s) 64, 118, 159
SfcI CTRYAG 1 cut(s) 140
Sse9I AATT 2 cut(s) 263, 323
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 20, 311
TaiI ACGT 1 cut(s) 58
TasI AATT 2 cut(s) 263, 323
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 2 cut(s) 367, 420
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 1 cut(s) 282
Van91I CCANNNNNTGG 1 cut(s) 170
VneI GTGCAC 1 cut(s) 14
XapI RAATTY 1 cut(s) 263
XceI RCATGY 1 cut(s) 403
XmnI GAANNNNTTC 2 cut(s) 41, 411
Zsp2I ATGCAT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.