Rorug05G0411600

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001272
Physical Location & Seq
Forward (+)
56833007 .. 56833576
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0411600.1

Sequence Viewer

Length: 570 bp
ATGGGAATAGAATCAAACTTTTCAACCAATGCCTCAAGCAGTAGAAATCAAGTCCTCCATGGCAAAGCTTCAACAACAGATGGCCACACAAAGGTTGAAGGTGGTGAATGCGGTATTATCTTGCCAAAGTCATGTGTTGCTCGTATCGCTCAACTCACTCATGATCTTGGTCACAATACCAATGGTCAAACAGTAGAGTGGCTCTTACAACAAGCTGAACCATTTATTATCGCTGCCACTGGGAAAAATGTATCCCCGATTAATACGCCTTCAACTCTAGTTGCTGTGGATTTGGAGGAGAATGCTGTTAGTCTTGAAGACAAAGATTTGGTTAAGAAGAAGCACACTATAGGTGACCAACCGCTGCTACCTGCTTATGACTATTATTTGAGGTTGGTTACACAAAACTATGAAATTGCTGACTTTTCTGCCAATGATGTTGCAATAGATGTAGGGATCCAAACTCAGGAAGAAACCAAGAATCAAGATGGGGAAGAAAGACTAGAAAAGGTGGTAAGGGAGAGGAAGAAAGAAAATGTTCAAGAAGGGGTTAAGGATTATCTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

189

Amino Acids

20.82

Weight (kDa)

4.95

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 24 - 177 2.8e-13 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 379
AciI CCGC 2 cut(s) 111, 362
AclWI GGATC 2 cut(s) 451, 464
AcoI YGGCCR 1 cut(s) 82
AfiI CCNNNNNNNGG 2 cut(s) 91, 466
AgsI TTSAA 6 cut(s) 24, 72, 98, 273, 317, 542
AluBI AGCT 2 cut(s) 68, 215
AluI AGCT 2 cut(s) 68, 215
AlwI GGATC 2 cut(s) 451, 464
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 2 cut(s) 233, 364
AseI ATTAAT 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 537
AsuHPI GGTGA 2 cut(s) 116, 365
BalI TGGCCA 1 cut(s) 84
BamHI GGATCC 1 cut(s) 456
BbsI GAAGAC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 220, 351
BccI CCATC 2 cut(s) 74, 482
BciVI GTATCC 1 cut(s) 262
BfaI CTAG 2 cut(s) 278, 503
BfmI CTRYAG 1 cut(s) 348
BfuAI ACCTGC 1 cut(s) 379
BfuI GTATCC 1 cut(s) 262
BisI GCNGC 2 cut(s) 234, 365
BlsI GCNGC 2 cut(s) 235, 366
BmiI GGNNCC 1 cut(s) 458
BmrI ACTGGG 1 cut(s) 249
BmuI ACTGGG 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 466
Bse1I ACTGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 2 cut(s) 91, 466
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 2 cut(s) 220, 351
BshFI GGCC 1 cut(s) 84
BslI CCNNNNNNNGG 2 cut(s) 91, 466
BsmI GAATGC 2 cut(s) 113, 307
BsnI GGCC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 163, 456
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 2 cut(s) 111, 362
BspANI GGCC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 478
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 458
BspMI ACCTGC 1 cut(s) 379
BspPI GGATC 2 cut(s) 451, 464
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 163, 456
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 465
BstDSI CCRYGG 1 cut(s) 58
BstEII GGTNACC 1 cut(s) 353
BstKTI GATC 2 cut(s) 166, 459
BstMBI GATC 2 cut(s) 163, 456
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstPI GGTNACC 1 cut(s) 353
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 220, 351
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
BsuI GTATCC 1 cut(s) 262
BsuRI GGCC 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 379
CciI TCATGA 1 cut(s) 160
CviAII CATG 3 cut(s) 59, 132, 161
CviJI RGCY 4 cut(s) 68, 84, 202, 215
CviKI_1 RGCY 4 cut(s) 68, 84, 202, 215
DdeI CTNAG 1 cut(s) 465
DpnI GATC 2 cut(s) 165, 458
DpnII GATC 2 cut(s) 163, 456
EaeI YGGCCR 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 58
Eco91I GGTNACC 1 cut(s) 353
EcoO65I GGTNACC 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 3 cut(s) 62, 135, 164
FaiI YATR 6 cut(s) 60, 133, 162, 350, 378, 411
FatI CATG 3 cut(s) 58, 131, 160
Fnu4HI GCNGC 2 cut(s) 234, 365
Fsp4HI GCNGC 2 cut(s) 234, 365
FspBI CTAG 2 cut(s) 278, 503
GluI GCNGC 2 cut(s) 234, 365
HaeIII GGCC 1 cut(s) 84
Hin1II CATG 3 cut(s) 62, 135, 164
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 2 cut(s) 11, 481
HphI GGTGA 2 cut(s) 116, 365
Hpy188I TCNGA 1 cut(s) 564
Hpy188III TCNNGA 5 cut(s) 161, 314, 467, 485, 542
HpyAV CCTTC 3 cut(s) 92, 279, 539
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 465
Hsp92II CATG 3 cut(s) 62, 135, 164
Kzo9I GATC 2 cut(s) 163, 456
LpnPI CCDG 3 cut(s) 225, 384, 452
Lsp1109I GCAGC 2 cut(s) 220, 351
MaeI CTAG 2 cut(s) 278, 503
MaeIII GTNAC 3 cut(s) 170, 353, 397
MalI GATC 2 cut(s) 165, 458
MboI GATC 2 cut(s) 163, 456
MboII GAAGA 5 cut(s) 329, 349, 482, 506, 538
MflI RGATCY 1 cut(s) 456
MlsI TGGCCA 1 cut(s) 84
MluCI AATT 2 cut(s) 414, 565
MluNI TGGCCA 1 cut(s) 84
MnlI CCTC 5 cut(s) 43, 65, 289, 384, 516
Mox20I TGGCCA 1 cut(s) 84
MroXI GAANNNNTTC 1 cut(s) 537
MscI TGGCCA 1 cut(s) 84
MseI TTAA 3 cut(s) 261, 333, 552
Msp20I TGGCCA 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 364
Mva1269I GAATGC 2 cut(s) 113, 307
MwoI GCNNNNNNNGC 1 cut(s) 146
NcoI CCATGG 1 cut(s) 58
NdeII GATC 2 cut(s) 163, 456
NlaIII CATG 3 cut(s) 62, 135, 164
NlaIV GGNNCC 1 cut(s) 458
NmuCI GTSAC 2 cut(s) 170, 353
PagI TCATGA 1 cut(s) 160
PctI GAATGC 2 cut(s) 113, 307
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 2 cut(s) 11, 481
PkrI GCNGC 2 cut(s) 235, 366
PshBI ATTAAT 1 cut(s) 261
PspEI GGTNACC 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 458
PsuI RGATCY 1 cut(s) 456
SaqAI TTAA 3 cut(s) 261, 333, 552
SatI GCNGC 2 cut(s) 234, 365
Sau3AI GATC 2 cut(s) 163, 456
SetI ASST 8 cut(s) 70, 96, 103, 217, 355, 373, 395, 513
SfcI CTRYAG 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 2 cut(s) 414, 565
SsiI CCGC 2 cut(s) 111, 362
SspMI CTAG 2 cut(s) 278, 503
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 193
TasI AATT 2 cut(s) 414, 565
TfiI GAWTC 2 cut(s) 11, 481
Tru1I TTAA 3 cut(s) 261, 333, 552
Tru9I TTAA 3 cut(s) 261, 333, 552
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 2 cut(s) 170, 353
TseI GCWGC 2 cut(s) 233, 364
Tsp45I GTSAC 2 cut(s) 170, 353
TspDTI ATGAA 1 cut(s) 426
TspRI CASTG 1 cut(s) 244
VspI ATTAAT 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 2 cut(s) 278, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.