Rh6CG106400

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001272
Physical Location & Seq
Forward (+)
12221146 .. 12223038
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG106400.1

Sequence Viewer

Length: 762 bp
ATGGATTTGATAGTGCACAGTCTATACAGCCACAAGAAGGTATTCCTTAGGGAGCGTGTTAGTAATGCAAGTGATGCTTTGGACAAGTTGAGATTTTTGAGTGTGACTGAGCCCTCGCTGCTTGGAGATGCTGTTGAGCTGCAGATACACATCAAACCCGACCCAGAGAATGGGACTATCACTATAACGGATGCTGGTATTGGGATGATGAAGGAGGAACTCATTGACTGCCTTGGTACCATTGCTCAGAGTGGTACTTCAAAATTCTTTACGGCTCTGAAGGAAAATAAGGATCTTGGTGCAGACAACGGTTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCTTTTCTTGTTGCTGACAAGGTAGTTGTTTCTACAAAAAGCCCAAAATCAGACAAGCAATACGTCTGGGAATCAGCTGCTGAGAGTAGCTCTTATATGATTAGGGTAGAAACTGATCCAGAAAATATCATTAGCCATGGGACGCATATCAAACTATATTTAAGGCCGGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTGTGGTAAAGAATTACTCACAATTTGTTTCTTTCCCCATCTACACATGGCAAGAAAAATCAAGAACTGTTGAGGTTGAAGAGGAGGAAGAACCAAAGGAAGGAGAAGAACCAAAGCCAGAGGGTGAGAAGAAAAAGAAGACTATAACTGAGAAGTATTGGGATTGGGAATTAGCCAATGAAACAAAGCCTATATGGGTAATTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

253

Amino Acids

28.7

Weight (kDa)

5.01

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 41 - 144 6.2e-09 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90 PF00183 176 - 252 6e-16 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 2 cut(s) 170, 556
AclWI GGATC 4 cut(s) 300, 455, 541, 554
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 2 cut(s) 238, 256
AfiI CCNNNNNNNGG 4 cut(s) 37, 170, 556, 653
AgsI TTSAA 2 cut(s) 261, 632
AluBI AGCT 3 cut(s) 139, 422, 435
AluI AGCT 3 cut(s) 139, 422, 435
Alw21I GWGCWC 1 cut(s) 18
Alw44I GTGCAC 1 cut(s) 14
AlwI GGATC 4 cut(s) 300, 455, 541, 554
AlwNI CAGNNNCTG 2 cut(s) 425, 539
AoxI GGCC 1 cut(s) 509
ApaLI GTGCAC 1 cut(s) 14
ApeKI GCWGC 3 cut(s) 118, 139, 422
ApoI RAATTY 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 41
Asp718I GGTACC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 544
AsuHPI GGTGA 1 cut(s) 689
AxyI CCTNAGG 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 18
BamHI GGATCC 1 cut(s) 546
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 698
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 3 cut(s) 105, 126, 409
BccI CCATC 1 cut(s) 599
BceAI ACGGC 1 cut(s) 288
BcnI CCSGG 1 cut(s) 544
BfmI CTRYAG 1 cut(s) 140
BisI GCNGC 3 cut(s) 119, 140, 423
BlsI GCNGC 3 cut(s) 120, 141, 424
Bme1390I CCNGG 1 cut(s) 544
BmiI GGNNCC 2 cut(s) 238, 548
BmrFI CCNGG 1 cut(s) 544
BmsI GCATC 3 cut(s) 64, 118, 181
BpiI GAAGAC 1 cut(s) 698
BplI GAGNNNNNCTC 2 cut(s) 419, 451
BpuMI CCSGG 1 cut(s) 544
BsaBI GATNNNNATC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 232, 481
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 170, 556, 653
Bse21I CCTNAGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 240
Bse8I GATNNNNATC 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 232, 481
BseGI GGATG 3 cut(s) 196, 210, 520
BseJI GATNNNNATC 1 cut(s) 149
BseLI CCNNNNNNNGG 4 cut(s) 37, 170, 556, 653
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 5 cut(s) 99, 260, 417, 546, 693
BseRI GAGGAG 1 cut(s) 650
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 3 cut(s) 105, 126, 409
BsgI GTGCAG 1 cut(s) 321
BshFI GGCC 1 cut(s) 511
BshNI GGYRCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 2 cut(s) 512, 544
BslFI GGGAC 2 cut(s) 187, 499
BslI CCNNNNNNNGG 4 cut(s) 37, 170, 556, 653
BsmFI GGGAC 2 cut(s) 187, 499
BsnI GGCC 1 cut(s) 511
Bsp1286I GDGCHC 2 cut(s) 18, 114
Bsp143I GATC 3 cut(s) 292, 460, 546
Bsp19I CCATGG 1 cut(s) 481
BspANI GGCC 1 cut(s) 511
BspCNI CTCAG 5 cut(s) 100, 259, 418, 545, 694
BspLI GGNNCC 2 cut(s) 238, 548
BspMAI CTGCAG 1 cut(s) 144
BspPI GGATC 4 cut(s) 300, 455, 541, 554
BspT107I GGYRCC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 232, 481
BssMI GATC 3 cut(s) 292, 460, 546
BssT1I CCWWGG 2 cut(s) 232, 481
Bst4CI ACNGT 3 cut(s) 20, 311, 622
Bst6I CTCTTC 1 cut(s) 627
BstAPI GCANNNNNTGC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 540
BstDEI CTNAG 6 cut(s) 47, 108, 246, 426, 532, 702
BstDSI CCRYGG 1 cut(s) 481
BstF5I GGATG 3 cut(s) 196, 210, 520
BstKTI GATC 3 cut(s) 295, 463, 549
BstMBI GATC 3 cut(s) 292, 460, 546
BstMWI GCNNNNNNNGC 2 cut(s) 74, 118
BstSCI CCNGG 1 cut(s) 542
BstSFI CTRYAG 1 cut(s) 140
BstSLI GKGCMC 1 cut(s) 18
BstV1I GCAGC 3 cut(s) 105, 126, 409
BstV2I GAAGAC 1 cut(s) 698
BstX2I RGATCY 2 cut(s) 292, 546
BstYI RGATCY 2 cut(s) 292, 546
Bsu36I CCTNAGG 1 cut(s) 47
BsuRI GGCC 1 cut(s) 511
BtgI CCRYGG 1 cut(s) 481
BtsCI GGATG 3 cut(s) 196, 210, 520
Cac8I GCNNGC 1 cut(s) 540
CaiI CAGNNNCTG 2 cut(s) 425, 539
CseI GACGC 1 cut(s) 496
Csp6I GTAC 2 cut(s) 237, 255
CviAII CATG 2 cut(s) 482, 600
CviQI GTAC 2 cut(s) 237, 255
DdeI CTNAG 6 cut(s) 47, 108, 246, 426, 532, 702
DpnI GATC 3 cut(s) 294, 462, 548
DpnII GATC 3 cut(s) 292, 460, 546
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco130I CCWWGG 2 cut(s) 232, 481
Eco24I GRGCYC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 299
Eco81I CCTNAGG 1 cut(s) 47
EcoT14I CCWWGG 2 cut(s) 232, 481
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 2 cut(s) 232, 481
FaeI CATG 2 cut(s) 485, 603
FalI AAGNNNNNCTT 2 cut(s) 61, 93
FaqI GGGAC 2 cut(s) 187, 499
FatI CATG 2 cut(s) 481, 599
Fnu4HI GCNGC 3 cut(s) 119, 140, 423
FokI GGATG 3 cut(s) 203, 217, 527
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 3 cut(s) 119, 140, 423
GluI GCNGC 3 cut(s) 119, 140, 423
HaeIII GGCC 1 cut(s) 511
HapII CCGG 2 cut(s) 512, 544
HgaI GACGC 1 cut(s) 496
Hin1II CATG 2 cut(s) 485, 603
HinfI GANTC 1 cut(s) 416
HpaII CCGG 2 cut(s) 512, 544
HphI GGTGA 1 cut(s) 689
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 4 cut(s) 249, 279, 397, 535
Hpy188III TCNNGA 3 cut(s) 464, 550, 615
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 4 cut(s) 31, 205, 274, 647
HpyCH4III ACNGT 3 cut(s) 20, 311, 622
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 4 cut(s) 16, 68, 142, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 118
HpyF3I CTNAG 6 cut(s) 47, 108, 246, 426, 532, 702
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 2 cut(s) 485, 603
KpnI GGTACC 1 cut(s) 240
Kzo9I GATC 3 cut(s) 292, 460, 546
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 9 cut(s) 177, 180, 397, 477, 525, 552, 557, 563, 684
Lsp1109I GCAGC 3 cut(s) 105, 126, 409
LweI GCATC 3 cut(s) 64, 118, 181
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 103
MalI GATC 3 cut(s) 294, 462, 548
MboI GATC 3 cut(s) 292, 460, 546
MboII GAAGA 5 cut(s) 644, 653, 671, 694, 703
MflI RGATCY 2 cut(s) 292, 546
MhlI GDGCHC 2 cut(s) 18, 114
MluCI AATT 6 cut(s) 263, 323, 565, 575, 722, 753
MnlI CCTC 6 cut(s) 124, 208, 619, 628, 631, 667
MroXI GAANNNNTTC 1 cut(s) 41
MseI TTAA 2 cut(s) 506, 756
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 2 cut(s) 512, 544
MspR9I CCNGG 1 cut(s) 544
MwoI GCNNNNNNNGC 2 cut(s) 74, 118
NciI CCSGG 1 cut(s) 544
NcoI CCATGG 1 cut(s) 481
NdeII GATC 3 cut(s) 292, 460, 546
NlaIII CATG 2 cut(s) 485, 603
NlaIV GGNNCC 2 cut(s) 238, 548
NmuCI GTSAC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 416
PflMI CCANNNNNTGG 2 cut(s) 170, 556
PkrI GCNGC 3 cut(s) 120, 141, 424
PspN4I GGNNCC 2 cut(s) 238, 548
PstI CTGCAG 1 cut(s) 144
PstNI CAGNNNCTG 2 cut(s) 425, 539
PsuI RGATCY 2 cut(s) 292, 546
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 2 cut(s) 238, 256
RsaNI GTAC 2 cut(s) 237, 255
SaqAI TTAA 2 cut(s) 506, 756
SatI GCNGC 3 cut(s) 119, 140, 423
Sau3AI GATC 3 cut(s) 292, 460, 546
ScrFI CCNGG 1 cut(s) 544
SduI GDGCHC 2 cut(s) 18, 114
SetI ASST 7 cut(s) 42, 141, 369, 411, 424, 437, 630
SfaNI GCATC 3 cut(s) 64, 118, 181
SfcI CTRYAG 1 cut(s) 140
Sse9I AATT 6 cut(s) 263, 323, 565, 575, 722, 753
StyD4I CCNGG 1 cut(s) 542
StyI CCWWGG 2 cut(s) 232, 481
TaaI ACNGT 3 cut(s) 20, 311, 622
TaiI ACGT 1 cut(s) 411
TasI AATT 6 cut(s) 263, 323, 565, 575, 722, 753
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 2 cut(s) 506, 756
Tru9I TTAA 2 cut(s) 506, 756
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 3 cut(s) 118, 139, 422
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 2 cut(s) 224, 747
TspGWI ACGGA 1 cut(s) 203
Van91I CCANNNNNTGG 2 cut(s) 170, 556
VneI GTGCAC 1 cut(s) 14
XapI RAATTY 1 cut(s) 263
XmnI GAANNNNTTC 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.