Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001272

Physical Location & Seq

Genomic Coordinates Reverse (-)

76107624 .. 76110422

Gene Structure 2799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG583400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGAAATTTGGTGGAGCAATGTGAGCCATGGATCCGCTCACCGCTTGATCTGGGCCGTCCATTGTCTAGGCGAGTTGTTATCTATTTCGAATGCAATTGTTGGAAAGGGGTTGATGTTAAACAAGGAAGGGTATGCTTCTATAGGAGGTGGTTCACCCTTGCGTAAGATGACAAATGAGCAGACAAATGCACTGAAAATGGCTTTGGAATCAAAGGACATGCCGGTGAATGTCTATGTGAGAATGCGGTTTGCTTTTCAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Ferrochelatase

Protein Analysis

88

Amino Acids

9.81

Weight (kDa)

9.36

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferrochelatase	PF00762	41 - 84	3.3e-08	Ferrochelatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04030 AT2G04030
fragaria_vesca	FvH4_4g29020 FvH4_4g29020
malus_domestica	MD13G1055300.v1.1 MD16G1054100.v1.1
prunus_persica	Prupe.1G295600_v2.0.a1
pyrus_communis	pycom16g04710
rosa_chinensis	RchiOBHm_Chr2g0102611 RchiOBHm_Chr2g0102621 RchiOBHm_Chr4g0437121 RchiOBHm_Chr6g0247561
rosa_laevigata	RLG00000031307 RLG00000031514 RLG00000035259
rosa_multiflora	Rmu_sc0000081.1_g000011 Rmu_sc0000082.1_g000018 Rmu_sc0004671.1_g000001 Rmu_sc0015724.1_g000001 Rmu_ssc0000006.1_g000007 Rmu_ssc0000451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110100 Rroxscaffold_2G00153330 Rroxscaffold_5G00378190 Rroxscaffold_6G00388360
rosa_rugosa	Rorug02G0184900 Rorug04G0298200 Rorug05G0411600 Rorug05G0445800.1 Rorug07G0145900.1
rosa_samantha	Rh1AG407900 Rh1AG446200 Rh1CG270300 Rh2AG219900 Rh2AG346800 Rh2CG162200 Rh2CG583400 Rh2DG226200 Rh3CG308200 Rh3DG115400 Rh4AG029500 Rh4AG299500 Rh4AG353000 Rh4BG306400 Rh4BG362500 Rh4CG376700 Rh4DG356500 Rh5AG186500 Rh5BG542300 Rh5DG106600 Rh5DG106700 Rh6CG106400
rosa_wichuraiana	Rw2G017120 Rw3G013500 Rw4G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	38
AciI	CCGC	3 cut(s)	36, 43, 247
AclWI	GGATC	2 cut(s)	27, 40
AcsI	RAATTY	1 cut(s)	6
AgsI	TTSAA	1 cut(s)	260
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AlwI	GGATC	2 cut(s)	27, 40
AoxI	GGCC	1 cut(s)	54
ApoI	RAATTY	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	54
AsuHPI	GGTGA	3 cut(s)	32, 147, 238
AsuII	TTCGAA	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	34
Bpu14I	TTCGAA	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	28
Bse118I	RCCGGY	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	224
BsmI	GAATGC	2 cut(s)	97, 249
BsnI	GGCC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	32, 48
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	3 cut(s)	36, 43, 247
BspANI	GGCC	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	34
BspPI	GGATC	2 cut(s)	27, 40
BspT104I	TTCGAA	1 cut(s)	89
BsrBI	CCGCTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	2 cut(s)	32, 48
BssT1I	CCWWGG	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	35, 51
BstMBI	GATC	2 cut(s)	32, 48
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	191
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	54
CviAII	CATG	2 cut(s)	29, 220
CviJI	RGCY	3 cut(s)	27, 56, 203
CviKI_1	RGCY	3 cut(s)	27, 56, 203
DpnI	GATC	2 cut(s)	34, 50
DpnII	GATC	2 cut(s)	32, 48
Eco130I	CCWWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	2 cut(s)	32, 223
FaiI	YATR	5 cut(s)	30, 135, 143, 221, 237
FatI	CATG	2 cut(s)	28, 219
FspBI	CTAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	2 cut(s)	32, 223
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	3 cut(s)	32, 147, 238
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	95, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	32, 223
Kzo9I	GATC	2 cut(s)	32, 48
LmnI	GCTCC	1 cut(s)	15
LpnPI	CCDG	2 cut(s)	37, 237
MaeI	CTAG	1 cut(s)	68
MalI	GATC	2 cut(s)	34, 50
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	2 cut(s)	32, 48
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	1 cut(s)	32
MluCI	AATT	2 cut(s)	6, 96
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	1 cut(s)	140
MseI	TTAA	1 cut(s)	119
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	96
Mva1269I	GAATGC	2 cut(s)	97, 249
MwoI	GCNNNNNNNGC	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	2 cut(s)	32, 48
NlaIII	CATG	2 cut(s)	32, 223
NlaIV	GGNNCC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	223
NspV	TTCGAA	1 cut(s)	89
PctI	GAATGC	2 cut(s)	97, 249
PfeI	GAWTC	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	119
Sau3AI	GATC	2 cut(s)	32, 48
Sau96I	GGNCC	1 cut(s)	54
SetI	ASST	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	141
SfuI	TTCGAA	1 cut(s)	89
SgeI	CNNG	9 cut(s)	41, 58, 64, 80, 85, 136, 172, 232, 236
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	6, 96
SsiI	CCGC	3 cut(s)	36, 43, 247
SspMI	CTAG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	28
TaqI	TCGA	1 cut(s)	89
TasI	AATT	2 cut(s)	6, 96
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	1 cut(s)	198
TspRI	CASTG	1 cut(s)	198
XapI	RAATTY	1 cut(s)	6
XceI	RCATGY	1 cut(s)	223
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.