Rh1AG407900

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001272
Physical Location & Seq
Reverse (-)
63574149 .. 63578732
4584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG407900.1

Sequence Viewer

Length: 690 bp
ATGTTGTCCTCAGAGCCTTCAAACTTAGGGGCAGGGCATGTTGCTGGTGTACAGACGATTATGAGTGCTAGGCTTCCTATAATCAAGCTTGTAGACTGTGGAACCGGAATTGAGTGTGATTTATCAATTGAGAACAGGGATGGCATTGTAAAATCCCAGATTGTCTACATAATATCTAGAATTGACGGAAGGGCTGGATTCTGGAGTGCTATGGCTTCCAATTTGACAAACCAATCTCGCAATGTCCTCAGCAAAAAGGTCATGGTTAAGAATGAGGATCTTGGTGCAGACAACGGTTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCTTTTCTTGTTGCTGACAAGCAGGTGCAGTTTTGGTTTCACACTTTTTTTAGTCTTATGCCTTGTAAAAACTATCTGCTCATGGTTGAGCTTCTAGTCTGGATGACTGTCTTGAGTAGTAGCTCTTATGTGATTAGGGTAGAAACTGATCCAGAAAATATCATTAGCCGTGGGACGCAGATCAAACTATATTTAAGGCCTGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGGTAAAGAATTACTTGCAAATTTTGGTGCAATTGCTTACACTTTGGTGCAAAAACCTATTGTCAAGGTCTTACCAGAAAATGGCCTGGAGGTTAGGTTATCAGGGTCAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

229

Amino Acids

25.86

Weight (kDa)

8.62

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTPAP-like_central PF22600 13 - 59 6.5e-10 Poly(A) RNA polymerase, mitochondrial-like, central palm domain
TPT PF03151 65 - 97 1.9e-07 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 343
AccB7I CCANNNNNTGG 2 cut(s) 574, 655
AccI GTMKAC 2 cut(s) 93, 165
AclWI GGATC 4 cut(s) 285, 473, 559, 572
AcsI RAATTY 1 cut(s) 594
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 2 cut(s) 574, 655
AgsI TTSAA 1 cut(s) 21
AjnI CCWGG 1 cut(s) 659
AleI CACNNNNGTG 1 cut(s) 619
AluBI AGCT 3 cut(s) 88, 421, 453
AluI AGCT 3 cut(s) 88, 421, 453
AlwI GGATC 4 cut(s) 285, 473, 559, 572
AlwNI CAGNNNCTG 1 cut(s) 557
AoxI GGCC 2 cut(s) 527, 657
ApoI RAATTY 1 cut(s) 594
AsuC2I CCSGG 1 cut(s) 562
BamHI GGATCC 1 cut(s) 564
BbvCI CCTCAGC 1 cut(s) 248
BccI CCATC 1 cut(s) 134
BceAI ACGGC 1 cut(s) 483
BciT130I CCWGG 1 cut(s) 661
BcnI CCSGG 1 cut(s) 562
BfaI CTAG 3 cut(s) 69, 177, 425
BfuAI ACCTGC 1 cut(s) 343
Bme1390I CCNGG 2 cut(s) 562, 661
BmiI GGNNCC 2 cut(s) 103, 566
BmrFI CCNGG 2 cut(s) 562, 661
BpmI CTGGAG 2 cut(s) 223, 682
Bpu10I CCTNAGC 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 463
BpuMI CCSGG 1 cut(s) 562
BsaJI CCNNGG 1 cut(s) 499
BsaWI WCCGGW 1 cut(s) 104
BsaXI ACNNNNNCTCC 2 cut(s) 655, 685
Bsc4I CCNNNNNNNGG 2 cut(s) 574, 655
Bse3DI GCAATG 1 cut(s) 247
BseBI CCWGG 1 cut(s) 661
BseDI CCNNGG 1 cut(s) 499
BseGI GGATG 2 cut(s) 145, 438
BseLI CCNNNNNNNGG 2 cut(s) 574, 655
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 3 cut(s) 24, 262, 564
BsgI GTGCAG 2 cut(s) 306, 377
BshFI GGCC 2 cut(s) 529, 659
BsiSI CCGG 2 cut(s) 105, 562
BslFI GGGAC 1 cut(s) 517
BslI CCNNNNNNNGG 2 cut(s) 574, 655
BsmFI GGGAC 1 cut(s) 517
BsnI GGCC 2 cut(s) 529, 659
Bsp1407I TGTACA 1 cut(s) 49
Bsp143I GATC 4 cut(s) 277, 478, 510, 564
BspANI GGCC 2 cut(s) 529, 659
BspCNI CTCAG 3 cut(s) 23, 261, 563
BspLI GGNNCC 2 cut(s) 103, 566
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 4 cut(s) 285, 473, 559, 572
BsrDI GCAATG 1 cut(s) 247
BsrGI TGTACA 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 499
BssMI GATC 4 cut(s) 277, 478, 510, 564
Bst2UI CCWGG 1 cut(s) 661
Bst4CI ACNGT 3 cut(s) 98, 296, 439
BstAUI TGTACA 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 4 cut(s) 10, 25, 248, 550
BstDSI CCRYGG 1 cut(s) 499
BstF5I GGATG 2 cut(s) 145, 438
BstKTI GATC 4 cut(s) 280, 481, 513, 567
BstMBI GATC 4 cut(s) 277, 478, 510, 564
BstNI CCWGG 1 cut(s) 661
BstNSI RCATGY 1 cut(s) 41
BstSCI CCNGG 2 cut(s) 560, 659
BstX2I RGATCY 2 cut(s) 277, 564
BstYI RGATCY 2 cut(s) 277, 564
BsuRI GGCC 2 cut(s) 529, 659
BtgI CCRYGG 1 cut(s) 499
BtsCI GGATG 2 cut(s) 145, 438
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 558
CaiI CAGNNNCTG 1 cut(s) 557
CseI GACGC 1 cut(s) 514
Csp6I GTAC 1 cut(s) 50
CviAII CATG 3 cut(s) 38, 262, 412
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 4 cut(s) 10, 25, 248, 550
DpnI GATC 4 cut(s) 279, 480, 512, 566
DpnII GATC 4 cut(s) 277, 478, 510, 564
Eco147I AGGCCT 1 cut(s) 529
EcoRII CCWGG 1 cut(s) 659
FaeI CATG 3 cut(s) 41, 265, 415
FalI AAGNNNNNCTT 2 cut(s) 572, 604
FaqI GGGAC 1 cut(s) 517
FatI CATG 3 cut(s) 37, 261, 411
FblI GTMKAC 2 cut(s) 93, 165
FokI GGATG 2 cut(s) 152, 445
FspBI CTAG 3 cut(s) 69, 177, 425
GsuI CTGGAG 2 cut(s) 223, 682
HaeIII GGCC 2 cut(s) 529, 659
HapII CCGG 2 cut(s) 105, 562
HgaI GACGC 1 cut(s) 514
Hin1II CATG 3 cut(s) 41, 265, 415
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 1 cut(s) 198
HpaII CCGG 2 cut(s) 105, 562
Hpy166II GTNNAC 3 cut(s) 50, 94, 166
Hpy188I TCNGA 2 cut(s) 13, 553
Hpy188III TCNNGA 7 cut(s) 177, 202, 430, 442, 482, 568, 683
Hpy8I GTNNAC 3 cut(s) 50, 94, 166
HpyAV CCTTC 2 cut(s) 27, 183
HpyCH4III ACNGT 3 cut(s) 98, 296, 439
HpyCH4V TGCA 5 cut(s) 287, 358, 592, 604, 624
HpyF3I CTNAG 4 cut(s) 10, 25, 248, 550
Hsp92II CATG 3 cut(s) 41, 265, 415
Kzo9I GATC 4 cut(s) 277, 478, 510, 564
MaeI CTAG 3 cut(s) 69, 177, 425
MalI GATC 4 cut(s) 279, 480, 512, 566
MboI GATC 4 cut(s) 277, 478, 510, 564
MfeI CAATTG 2 cut(s) 126, 605
MflI RGATCY 2 cut(s) 277, 564
MluCI AATT 8 cut(s) 108, 126, 180, 220, 308, 583, 594, 605
MnlI CCTC 4 cut(s) 19, 257, 268, 657
MseI TTAA 2 cut(s) 267, 524
MslI CAYNNNNRTG 1 cut(s) 619
MspI CCGG 2 cut(s) 105, 562
MspR9I CCNGG 2 cut(s) 562, 661
MunI CAATTG 2 cut(s) 126, 605
MvaI CCWGG 1 cut(s) 661
NciI CCSGG 1 cut(s) 562
NdeII GATC 4 cut(s) 277, 478, 510, 564
NlaIII CATG 3 cut(s) 41, 265, 415
NlaIV GGNNCC 2 cut(s) 103, 566
NspI RCATGY 1 cut(s) 41
OliI CACNNNNGTG 1 cut(s) 619
PaqCI CACCTGC 1 cut(s) 343
PceI AGGCCT 1 cut(s) 529
PfeI GAWTC 1 cut(s) 198
PflMI CCANNNNNTGG 2 cut(s) 574, 655
Psp6I CCWGG 1 cut(s) 659
PspGI CCWGG 1 cut(s) 659
PspN4I GGNNCC 2 cut(s) 103, 566
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 2 cut(s) 277, 564
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 619
SaqAI TTAA 2 cut(s) 267, 524
Sau3AI GATC 4 cut(s) 277, 478, 510, 564
ScrFI CCNGG 2 cut(s) 562, 661
SetI ASST 9 cut(s) 90, 261, 357, 423, 455, 633, 644, 668, 673
SmiMI CAYNNNNRTG 1 cut(s) 619
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
Sse9I AATT 8 cut(s) 108, 126, 180, 220, 308, 583, 594, 605
SseBI AGGCCT 1 cut(s) 529
SspMI CTAG 3 cut(s) 69, 177, 425
StuI AGGCCT 1 cut(s) 529
StyD4I CCNGG 2 cut(s) 560, 659
TaaI ACNGT 3 cut(s) 98, 296, 439
TasI AATT 8 cut(s) 108, 126, 180, 220, 308, 583, 594, 605
TatI WGTACW 1 cut(s) 49
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 2 cut(s) 267, 524
Tru9I TTAA 2 cut(s) 267, 524
TspGWI ACGGA 1 cut(s) 201
Van91I CCANNNNNTGG 2 cut(s) 574, 655
XapI RAATTY 1 cut(s) 594
XbaI TCTAGA 1 cut(s) 176
XceI RCATGY 1 cut(s) 41
XmiI GTMKAC 2 cut(s) 93, 165
XspI CTAG 3 cut(s) 69, 177, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.