Rw2G017120

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001272
Physical Location & Seq
Reverse (-)
20932609 .. 20933103
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G017120.1

Sequence Viewer

Length: 495 bp
ATGCTTTTGAATCTGATCTTTGTGCTTATATCTTGTTTGGAAAATAAGGATCTTGGTGCAGACAACGGTTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCTTTTCTTGTTGCTGACAAGCAGGTGCAGTTTTGGTTTCACACTTTTTTTAGTCTTATGCCTTGTAAAAACTATCTACTCATGGTTGAGCTTCTAGTCTGGATGACTGTCTTGAGCAGTAGCTCTTATGTGATTAGGGTAGAAACTGATCCAGAAAATATCATTAGCCGTGGGATGCAGATCAAACTATATTTAAGGGTACCTTACCTCCTTCATTTCTTATTTCATGACATTTGTTCATTTTGCATGTGCCTGTGTTGTTTGTTGGCCAATGAATGTGTGTTCAATTCTTTTTTTCAACACTATGTCTGGATGGCCATCTTATATTTTTCTTCTTGCAGCCTGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

164

Amino Acids

18.95

Weight (kDa)

6.02

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 115
Acc36I ACCTGC 1 cut(s) 115
Acc65I GGTACC 1 cut(s) 301
AccB1I GGYRCC 1 cut(s) 301
AccB7I CCANNNNNTGG 1 cut(s) 489
AclWI GGATC 4 cut(s) 57, 245, 474, 487
AcoI YGGCCR 2 cut(s) 369, 417
AfaI GTAC 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 489
AgsI TTSAA 3 cut(s) 10, 388, 401
AluBI AGCT 2 cut(s) 193, 225
AluI AGCT 2 cut(s) 193, 225
AlwI GGATC 4 cut(s) 57, 245, 474, 487
AlwNI CAGNNNCTG 1 cut(s) 472
AoxI GGCC 2 cut(s) 369, 417
ApeKI GCWGC 1 cut(s) 441
Asp718I GGTACC 1 cut(s) 301
AsuC2I CCSGG 1 cut(s) 477
BalI TGGCCA 2 cut(s) 371, 419
BamHI GGATCC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 453
BccI CCATC 2 cut(s) 409, 428
BceAI ACGGC 1 cut(s) 255
BcnI CCSGG 1 cut(s) 477
BfaI CTAG 1 cut(s) 197
BfuAI ACCTGC 1 cut(s) 115
BisI GCNGC 1 cut(s) 442
BlsI GCNGC 1 cut(s) 443
Bme1390I CCNGG 1 cut(s) 477
BmiI GGNNCC 2 cut(s) 303, 481
BmrFI CCNGG 1 cut(s) 477
BmsI GCATC 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 477
BsaBI GATNNNNATC 2 cut(s) 281, 419
BsaJI CCNNGG 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 1 cut(s) 489
Bse8I GATNNNNATC 2 cut(s) 281, 419
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 3 cut(s) 210, 282, 420
BseJI GATNNNNATC 2 cut(s) 281, 419
BseLI CCNNNNNNNGG 1 cut(s) 489
BseMII CTCAG 1 cut(s) 479
BseXI GCAGC 1 cut(s) 453
BsgI GTGCAG 2 cut(s) 78, 149
BshFI GGCC 2 cut(s) 371, 419
BshNI GGYRCC 1 cut(s) 301
BsiSI CCGG 1 cut(s) 477
BslI CCNNNNNNNGG 1 cut(s) 489
BsnI GGCC 2 cut(s) 371, 419
Bsp143I GATC 5 cut(s) 15, 49, 250, 282, 479
BspANI GGCC 2 cut(s) 371, 419
BspCNI CTCAG 1 cut(s) 478
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 303, 481
BspMI ACCTGC 1 cut(s) 115
BspPI GGATC 4 cut(s) 57, 245, 474, 487
BspT107I GGYRCC 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 5 cut(s) 15, 49, 250, 282, 479
Bst4CI ACNGT 2 cut(s) 68, 211
BstC8I GCNNGC 1 cut(s) 473
BstDEI CTNAG 1 cut(s) 465
BstDSI CCRYGG 1 cut(s) 271
BstF5I GGATG 3 cut(s) 210, 282, 420
BstKTI GATC 5 cut(s) 18, 52, 253, 285, 482
BstMBI GATC 5 cut(s) 15, 49, 250, 282, 479
BstNSI RCATGY 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 475
BstV1I GCAGC 1 cut(s) 453
BstX2I RGATCY 2 cut(s) 49, 479
BstYI RGATCY 2 cut(s) 49, 479
BsuRI GGCC 2 cut(s) 371, 419
BtgI CCRYGG 1 cut(s) 271
BtsCI GGATG 3 cut(s) 210, 282, 420
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 473
CaiI CAGNNNCTG 1 cut(s) 472
CciI TCATGA 1 cut(s) 328
Csp6I GTAC 1 cut(s) 302
CviAII CATG 3 cut(s) 184, 329, 349
CviJI RGCY 7 cut(s) 193, 225, 270, 371, 419, 444, 471
CviKI_1 RGCY 7 cut(s) 193, 225, 270, 371, 419, 444, 471
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 1 cut(s) 465
DpnI GATC 5 cut(s) 17, 51, 252, 284, 481
DpnII GATC 5 cut(s) 15, 49, 250, 282, 479
EaeI YGGCCR 2 cut(s) 369, 417
FaeI CATG 3 cut(s) 187, 332, 352
FalI AAGNNNNNCTT 2 cut(s) 289, 321
FatI CATG 3 cut(s) 183, 328, 348
Fnu4HI GCNGC 1 cut(s) 442
FokI GGATG 3 cut(s) 217, 289, 427
Fsp4HI GCNGC 1 cut(s) 442
FspBI CTAG 1 cut(s) 197
GluI GCNGC 1 cut(s) 442
HaeIII GGCC 2 cut(s) 371, 419
HapII CCGG 1 cut(s) 477
Hin1II CATG 3 cut(s) 187, 332, 352
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 477
Hpy188I TCNGA 2 cut(s) 15, 468
Hpy188III TCNNGA 6 cut(s) 202, 214, 254, 329, 412, 483
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 2 cut(s) 68, 211
HpyCH4V TGCA 5 cut(s) 59, 130, 280, 348, 441
HpyF3I CTNAG 1 cut(s) 465
Hsp92II CATG 3 cut(s) 187, 332, 352
KpnI GGTACC 1 cut(s) 305
Kzo9I GATC 5 cut(s) 15, 49, 250, 282, 479
LpnPI CCDG 8 cut(s) 110, 187, 267, 368, 397, 458, 485, 490
Lsp1109I GCAGC 1 cut(s) 453
LweI GCATC 1 cut(s) 267
MaeI CTAG 1 cut(s) 197
MalI GATC 5 cut(s) 17, 51, 252, 284, 481
MboI GATC 5 cut(s) 15, 49, 250, 282, 479
MboII GAAGA 1 cut(s) 426
MflI RGATCY 2 cut(s) 49, 479
MlsI TGGCCA 2 cut(s) 371, 419
MluCI AATT 2 cut(s) 80, 388
MluNI TGGCCA 2 cut(s) 371, 419
MnlI CCTC 1 cut(s) 320
Mox20I TGGCCA 2 cut(s) 371, 419
MscI TGGCCA 2 cut(s) 371, 419
MseI TTAA 1 cut(s) 296
Msp20I TGGCCA 2 cut(s) 371, 419
MspI CCGG 1 cut(s) 477
MspR9I CCNGG 1 cut(s) 477
NciI CCSGG 1 cut(s) 477
NdeII GATC 5 cut(s) 15, 49, 250, 282, 479
NlaIII CATG 3 cut(s) 187, 332, 352
NlaIV GGNNCC 2 cut(s) 303, 481
NspI RCATGY 1 cut(s) 352
PagI TCATGA 1 cut(s) 328
PaqCI CACCTGC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 489
PkrI GCNGC 1 cut(s) 443
PspN4I GGNNCC 2 cut(s) 303, 481
PstNI CAGNNNCTG 1 cut(s) 472
PsuI RGATCY 2 cut(s) 49, 479
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 1 cut(s) 442
Sau3AI GATC 5 cut(s) 15, 49, 250, 282, 479
ScrFI CCNGG 1 cut(s) 477
SetI ASST 5 cut(s) 129, 195, 227, 307, 312
SfaNI GCATC 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 2 cut(s) 80, 388
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 475
TaaI ACNGT 2 cut(s) 68, 211
TasI AATT 2 cut(s) 80, 388
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TseI GCWGC 1 cut(s) 441
TspDTI ATGAA 4 cut(s) 305, 317, 330, 390
Van91I CCANNNNNTGG 1 cut(s) 489
XceI RCATGY 1 cut(s) 352
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.