Rh5DG106700

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001272
Physical Location & Seq
Forward (+)
9704853 .. 9706164
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG106700.1

Sequence Viewer

Length: 492 bp
ATGACGAAGGAGGAACTCATTGACTGCCTTGGTACCATTGCTCAGAGTGGTACTTCAAAATTCTTTACGGCTCTGAAGGTAGTTGTTTCTACAAAAAGCCCAAAATCAGACAAGCAATACGTCTGGGAATCAGCTGCTGAGAGTAGCTCTTATATGATTAGGGTAGAAACTGATCCAGAAAATATCATTAGCCGTAGGACGCAGATCAAACTATATTTAAGGCCGGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGGTAAAGAATTACTCACAATTTGTTTCTTTTCCCATCTACACATGGCAAGAAAAATCAAGGACTGTTGAGGTTGAAGAGGAGGAAGAACCAAAGGAAGGAGAAGAACCAAAGCCAGAGGGTGAGAAGAAAAAGAAGACTATAACTGAGAAGTATTGGGATTGGGAATTAGCCAATGAAACAAAGCCTATATGGGTGAGTAATGAGTTCCACAGTTGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

163

Amino Acids

19.22

Weight (kDa)

5.08

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP90 PF00183 80 - 157 7.4e-17 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 268
AclWI GGATC 3 cut(s) 167, 253, 266
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 2 cut(s) 34, 52
AfiI CCNNNNNNNGG 2 cut(s) 268, 365
AgsI TTSAA 2 cut(s) 57, 344
AluBI AGCT 2 cut(s) 134, 147
AluI AGCT 2 cut(s) 134, 147
AlwI GGATC 3 cut(s) 167, 253, 266
AlwNI CAGNNNCTG 2 cut(s) 137, 251
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 59
Asp718I GGTACC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 2 cut(s) 401, 475
BamHI GGATCC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 410
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 311
BceAI ACGGC 2 cut(s) 84, 177
BcnI CCSGG 1 cut(s) 256
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 256
BmiI GGNNCC 2 cut(s) 34, 260
BmrFI CCNGG 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 410
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BpuMI CCSGG 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 365
Bse3DI GCAATG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 2 cut(s) 268, 365
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 4 cut(s) 56, 129, 258, 405
BseRI GAGGAG 1 cut(s) 362
BseXI GCAGC 1 cut(s) 121
BshFI GGCC 1 cut(s) 223
BshNI GGYRCC 1 cut(s) 32
BsiSI CCGG 2 cut(s) 224, 256
BslI CCNNNNNNNGG 2 cut(s) 268, 365
BsnI GGCC 1 cut(s) 223
Bsp143I GATC 3 cut(s) 172, 204, 258
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 4 cut(s) 55, 130, 257, 406
BspLI GGNNCC 2 cut(s) 34, 260
BspPI GGATC 3 cut(s) 167, 253, 266
BspT107I GGYRCC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 3 cut(s) 172, 204, 258
BssT1I CCWWGG 1 cut(s) 28
Bst4CI ACNGT 2 cut(s) 334, 482
Bst6I CTCTTC 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 4 cut(s) 42, 138, 244, 414
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 3 cut(s) 175, 207, 261
BstMBI GATC 3 cut(s) 172, 204, 258
BstSCI CCNGG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 410
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
BsuRI GGCC 1 cut(s) 223
BtsCI GGATG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 252
CaiI CAGNNNCTG 2 cut(s) 137, 251
CseI GACGC 1 cut(s) 208
Csp6I GTAC 2 cut(s) 33, 51
CviAII CATG 1 cut(s) 312
CviQI GTAC 2 cut(s) 33, 51
DdeI CTNAG 4 cut(s) 42, 138, 244, 414
DpnI GATC 3 cut(s) 174, 206, 260
DpnII GATC 3 cut(s) 172, 204, 258
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 1 cut(s) 315
FaiI YATR 8 cut(s) 153, 155, 214, 237, 313, 410, 458, 460
FatI CATG 1 cut(s) 311
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 223
HapII CCGG 2 cut(s) 224, 256
HgaI GACGC 1 cut(s) 208
Hin1II CATG 1 cut(s) 315
HinfI GANTC 1 cut(s) 128
HpaII CCGG 2 cut(s) 224, 256
HphI GGTGA 2 cut(s) 401, 475
Hpy188I TCNGA 4 cut(s) 45, 75, 109, 247
Hpy188III TCNNGA 2 cut(s) 176, 262
HpyAV CCTTC 2 cut(s) 70, 359
HpyCH4III ACNGT 2 cut(s) 334, 482
HpyCH4IV ACGT 1 cut(s) 120
HpyF3I CTNAG 4 cut(s) 42, 138, 244, 414
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 1 cut(s) 315
KpnI GGTACC 1 cut(s) 36
Kzo9I GATC 3 cut(s) 172, 204, 258
LpnPI CCDG 7 cut(s) 109, 189, 237, 264, 269, 275, 396
Lsp1109I GCAGC 1 cut(s) 121
MaeII ACGT 1 cut(s) 120
MalI GATC 3 cut(s) 174, 206, 260
MboI GATC 3 cut(s) 172, 204, 258
MboII GAAGA 5 cut(s) 356, 365, 383, 406, 415
MflI RGATCY 1 cut(s) 258
MluCI AATT 4 cut(s) 59, 277, 287, 434
MnlI CCTC 5 cut(s) 4, 331, 340, 343, 379
MseI TTAA 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 2 cut(s) 224, 256
MspR9I CCNGG 1 cut(s) 256
NciI CCSGG 1 cut(s) 256
NdeII GATC 3 cut(s) 172, 204, 258
NlaIII CATG 1 cut(s) 315
NlaIV GGNNCC 2 cut(s) 34, 260
PfeI GAWTC 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 34, 260
PstNI CAGNNNCTG 2 cut(s) 137, 251
PsuI RGATCY 1 cut(s) 258
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 2 cut(s) 34, 52
RsaNI GTAC 2 cut(s) 33, 51
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 3 cut(s) 172, 204, 258
ScrFI CCNGG 1 cut(s) 256
SetI ASST 5 cut(s) 81, 123, 136, 149, 342
Sse9I AATT 4 cut(s) 59, 277, 287, 434
StyD4I CCNGG 1 cut(s) 254
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 2 cut(s) 334, 482
TaiI ACGT 1 cut(s) 123
TasI AATT 4 cut(s) 59, 277, 287, 434
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 459
Van91I CCANNNNNTGG 1 cut(s) 268
XapI RAATTY 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.