Rh5BG542300

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001272
Physical Location & Seq
Reverse (-)
86030304 .. 86049570
19267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG542300.1

Sequence Viewer

Length: 666 bp
ATGTTGTCCTCAGAGCCTTCAAACTTAGGGGCAGGGCATGTTGCTGGTGTACAGACGATTATGAGTGCTAGGCTTCCTATAATCAAGCTTGTAGACTGTGGAACCGGAATTGAGTGTGATTTATCAATTGAGAACAGGGATGGCATTGTAAAACCCCAGATTGTCTACATAATATCTAGAATTGACGGAAGGGCTGGATTCTGGAGTGCTATGGCTTCCAATTTGACAAACCAATCTCGCAATGTCCTCAGCAAAAAGGTCATGGTTAAGAATGAGGATCTTGGTGCAGACAACGGTTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCTTTTCTTGTTGCTGACAAGCAGGTGCAGTTTTGGTTTCACACTTTTTTTAGTCTTATGCCTTGTAAAAACTATCTGCTCATGGTTGAGCTTCTAGTCTGGATGACTGTCTTGAGCAGTAGCTCTTATGTGATTAGGGTAGAAACTGATCCAGAAAATATCATTAGCCGTGGGACGCAGATCAAACTATATTTAAGGCCTGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGACTGAAACTGAATTAAAGGCGATGCTAGCTCATAGAAGTAATGTAGTTGGAAAAGAAGATTCCTCTATGGCTTTTAACAATGTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

221

Amino Acids

24.57

Weight (kDa)

5.94

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTPAP-like_central PF22600 13 - 59 9e-09 Poly(A) RNA polymerase, mitochondrial-like, central palm domain
TPT PF03151 65 - 97 1.8e-07 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 343
AccI GTMKAC 2 cut(s) 93, 165
AclWI GGATC 4 cut(s) 285, 473, 559, 572
AfaI GTAC 1 cut(s) 51
AgsI TTSAA 1 cut(s) 21
AluBI AGCT 4 cut(s) 88, 421, 453, 605
AluI AGCT 4 cut(s) 88, 421, 453, 605
AlwI GGATC 4 cut(s) 285, 473, 559, 572
AlwNI CAGNNNCTG 1 cut(s) 557
AoxI GGCC 1 cut(s) 527
AsuC2I CCSGG 1 cut(s) 562
AsuNHI GCTAGC 1 cut(s) 601
BamHI GGATCC 1 cut(s) 564
BbvCI CCTCAGC 1 cut(s) 248
BccI CCATC 1 cut(s) 134
BceAI ACGGC 1 cut(s) 483
BcnI CCSGG 1 cut(s) 562
BfaI CTAG 4 cut(s) 69, 177, 425, 602
BfuAI ACCTGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 562
BmiI GGNNCC 2 cut(s) 103, 566
BmrFI CCNGG 1 cut(s) 562
BmsI GCATC 1 cut(s) 588
BmtI GCTAGC 1 cut(s) 605
BpmI CTGGAG 1 cut(s) 223
Bpu10I CCTNAGC 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 463
BpuMI CCSGG 1 cut(s) 562
BsaJI CCNNGG 1 cut(s) 499
BsaWI WCCGGW 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 499
BseGI GGATG 2 cut(s) 145, 438
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 3 cut(s) 24, 262, 564
BsgI GTGCAG 2 cut(s) 306, 377
BshFI GGCC 1 cut(s) 529
BsiSI CCGG 2 cut(s) 105, 562
BslFI GGGAC 1 cut(s) 517
BsmFI GGGAC 1 cut(s) 517
BsnI GGCC 1 cut(s) 529
Bsp1407I TGTACA 1 cut(s) 49
Bsp143I GATC 4 cut(s) 277, 478, 510, 564
BspANI GGCC 1 cut(s) 529
BspCNI CTCAG 3 cut(s) 23, 261, 563
BspLI GGNNCC 2 cut(s) 103, 566
BspMI ACCTGC 1 cut(s) 343
BspOI GCTAGC 1 cut(s) 605
BspPI GGATC 4 cut(s) 285, 473, 559, 572
BsrDI GCAATG 1 cut(s) 247
BsrGI TGTACA 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 499
BssMI GATC 4 cut(s) 277, 478, 510, 564
Bst4CI ACNGT 3 cut(s) 98, 296, 439
BstAUI TGTACA 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 558, 603
BstDEI CTNAG 4 cut(s) 10, 25, 248, 550
BstDSI CCRYGG 1 cut(s) 499
BstF5I GGATG 2 cut(s) 145, 438
BstKTI GATC 4 cut(s) 280, 481, 513, 567
BstMBI GATC 4 cut(s) 277, 478, 510, 564
BstMWI GCNNNNNNNGC 1 cut(s) 602
BstNSI RCATGY 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 560
BstX2I RGATCY 2 cut(s) 277, 564
BstYI RGATCY 2 cut(s) 277, 564
BsuRI GGCC 1 cut(s) 529
BtgI CCRYGG 1 cut(s) 499
BtgZI GCGATG 1 cut(s) 611
BtsCI GGATG 2 cut(s) 145, 438
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 2 cut(s) 558, 603
CaiI CAGNNNCTG 1 cut(s) 557
CseI GACGC 1 cut(s) 514
Csp6I GTAC 1 cut(s) 50
CviAII CATG 4 cut(s) 38, 262, 412, 663
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 4 cut(s) 10, 25, 248, 550
DpnI GATC 4 cut(s) 279, 480, 512, 566
DpnII GATC 4 cut(s) 277, 478, 510, 564
Eco147I AGGCCT 1 cut(s) 529
FaeI CATG 4 cut(s) 41, 265, 415, 666
FaqI GGGAC 1 cut(s) 517
FatI CATG 4 cut(s) 37, 261, 411, 662
FblI GTMKAC 2 cut(s) 93, 165
FokI GGATG 2 cut(s) 152, 445
FspBI CTAG 4 cut(s) 69, 177, 425, 602
GsuI CTGGAG 1 cut(s) 223
HaeIII GGCC 1 cut(s) 529
HapII CCGG 2 cut(s) 105, 562
HgaI GACGC 1 cut(s) 514
Hin1II CATG 4 cut(s) 41, 265, 415, 666
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 2 cut(s) 198, 635
HpaII CCGG 2 cut(s) 105, 562
Hpy166II GTNNAC 3 cut(s) 50, 94, 166
Hpy188I TCNGA 2 cut(s) 13, 553
Hpy188III TCNNGA 6 cut(s) 177, 202, 430, 442, 482, 568
Hpy8I GTNNAC 3 cut(s) 50, 94, 166
HpyAV CCTTC 2 cut(s) 27, 183
HpyCH4III ACNGT 3 cut(s) 98, 296, 439
HpyCH4V TGCA 2 cut(s) 287, 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 602
HpyF3I CTNAG 4 cut(s) 10, 25, 248, 550
Hsp92II CATG 4 cut(s) 41, 265, 415, 666
Kzo9I GATC 4 cut(s) 277, 478, 510, 564
LweI GCATC 1 cut(s) 588
MaeI CTAG 4 cut(s) 69, 177, 425, 602
MaeIII GTNAC 1 cut(s) 658
MalI GATC 4 cut(s) 279, 480, 512, 566
MboI GATC 4 cut(s) 277, 478, 510, 564
MboII GAAGA 1 cut(s) 644
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 2 cut(s) 277, 564
MluCI AATT 6 cut(s) 108, 126, 180, 220, 308, 587
MmeI TCCRAC 1 cut(s) 604
MnlI CCTC 4 cut(s) 19, 257, 268, 649
MseI TTAA 4 cut(s) 267, 524, 590, 651
MspI CCGG 2 cut(s) 105, 562
MspR9I CCNGG 1 cut(s) 562
MunI CAATTG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 602
NciI CCSGG 1 cut(s) 562
NdeII GATC 4 cut(s) 277, 478, 510, 564
NheI GCTAGC 1 cut(s) 601
NlaIII CATG 4 cut(s) 41, 265, 415, 666
NlaIV GGNNCC 2 cut(s) 103, 566
NspI RCATGY 1 cut(s) 41
PaqCI CACCTGC 1 cut(s) 343
PceI AGGCCT 1 cut(s) 529
PfeI GAWTC 2 cut(s) 198, 635
PspN4I GGNNCC 2 cut(s) 103, 566
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 2 cut(s) 277, 564
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SaqAI TTAA 4 cut(s) 267, 524, 590, 651
Sau3AI GATC 4 cut(s) 277, 478, 510, 564
ScrFI CCNGG 1 cut(s) 562
SetI ASST 6 cut(s) 90, 261, 357, 423, 455, 607
SfaNI GCATC 1 cut(s) 588
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
Sse9I AATT 6 cut(s) 108, 126, 180, 220, 308, 587
SseBI AGGCCT 1 cut(s) 529
SspMI CTAG 4 cut(s) 69, 177, 425, 602
StuI AGGCCT 1 cut(s) 529
StyD4I CCNGG 1 cut(s) 560
TaaI ACNGT 3 cut(s) 98, 296, 439
TasI AATT 6 cut(s) 108, 126, 180, 220, 308, 587
TatI WGTACW 1 cut(s) 49
TfiI GAWTC 2 cut(s) 198, 635
Tru1I TTAA 4 cut(s) 267, 524, 590, 651
Tru9I TTAA 4 cut(s) 267, 524, 590, 651
TspGWI ACGGA 1 cut(s) 201
XbaI TCTAGA 1 cut(s) 176
XceI RCATGY 1 cut(s) 41
XmiI GTMKAC 2 cut(s) 93, 165
XspI CTAG 4 cut(s) 69, 177, 425, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.