RLG00000035259

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001272
Physical Location & Seq
Reverse (-)
63796605 .. 63801640
5036 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035259

Sequence Viewer

Length: 1140 bp
ATGAGGCCAGCACTGCCCACACTAAGAGTTTCAGAGCTTTCTTCGCAACTAGCGTCGTATGCAGCGGTGCTTTTCTCCAGTTGTGGCGGAGACTCGACTCGGACCAATGCTTTTGCATCAACCGCTTCGTCGCCAGCTTCACCATTCCCTCACTCTCCTTCGACTTCATCTCTGGTTGCGGCGAAGAGACTCAACATCAAAAGCTTAAATCCCAACAAGGCCTTGAACCTCAGAAGTGCCTTTGTGCCCCAAAATGGGCTCAGAAAGGGCTTCGCTTGCGGTGGATTGAAATGGAGGCTTGAGACCCAAAATAGGCAGGTCACTGTTCGCTGCGATGCTGCGGTCGCCGATACGCCCGGTGAGGAATTCCAGTACCAAGCCGAGATGATTTGTGGTGTTATTGTTATATGGGCAATCAAAATGGATGCATTGGGTTTAAATTATGGGGACTTTACTCATAGTTGGGACTGTTTACAATTTTTGAGTGTGACTGAGCCCTCGCTGCTTGGAGATGCTGTTGAGCTGCAGATACGTATCAAACCCGACCCAGAGAATGGGACCATCACTATAACGGATACTGGTATTGGGATGACGAAGGAGGAACTCATTGACTGCCTTGGTACCATTGCTCAGAGTGGTACTTCAAAATTCTTGATGGCTCTGAAGGAAAATAAGGATCTTGGTGCAGACAACGGTTTGATTGGTCAATTTGGTGTTGGGTTTTATTCTGCTTTTCTTGTTGCTGACAAGGTAGTTGTTTCTACAAAAAGCCCAAAATCAGATAAGCAACACGTCTGGGAATCAGCTGCTGAGAGTAGCTCTTATGTGATTAGGGTAGAAACTGATCCAGAAAATATCATTAGCCGTGGGACGCAGGTCAAACTATATTTAAGGCCGGATGACAAATTTCAGAGTTTGGTGAAGAATTACTCGCAATTTGTTTCTTTCCCCATCTACACATGGCAAGAAAAGTCAAGGACTGTTGAGGTTGAAGAGGAGGAAGAACCAAAGGAAGGAGAAGAACCAAAGCCAGAGGGTGAGAAGAAAAAGAAGACTATAACTGAGAAGTATTGGGATTGGGAATTAGCCAATGAAACAAAGCCTATATGGGTGAGTAATGAGTTCCACAGTTGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

380

Amino Acids

42.05

Weight (kDa)

5.31

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 170 - 267 1.3e-08 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90 PF00183 300 - 373 5.9e-15 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 307, 865
Acc65I GGTACC 1 cut(s) 620
AccB1I GGYRCC 1 cut(s) 620
AccB7I CCANNNNNTGG 1 cut(s) 554
AciI CCGC 6 cut(s) 65, 87, 123, 179, 279, 341
AclWI GGATC 2 cut(s) 684, 839
AcsI RAATTY 3 cut(s) 365, 647, 905
AcuI CTGAAG 1 cut(s) 683
AfaI GTAC 3 cut(s) 374, 622, 640
AfiI CCNNNNNNNGG 5 cut(s) 254, 255, 312, 554, 1013
AflIII ACRYGT 1 cut(s) 790
AgsI TTSAA 4 cut(s) 226, 289, 645, 992
AjiI CACGTC 1 cut(s) 793
AluBI AGCT 6 cut(s) 37, 137, 204, 523, 806, 819
AluI AGCT 6 cut(s) 37, 137, 204, 523, 806, 819
Alw26I GTCTC 3 cut(s) 84, 181, 296
AlwI GGATC 2 cut(s) 684, 839
AlwNI CAGNNNCTG 1 cut(s) 809
AoxI GGCC 3 cut(s) 5, 219, 893
ApeKI GCWGC 6 cut(s) 62, 330, 338, 502, 523, 806
ApoI RAATTY 3 cut(s) 365, 647, 905
Asp718I GGTACC 1 cut(s) 620
AspS9I GGNCC 2 cut(s) 102, 558
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 5 cut(s) 132, 371, 931, 1049, 1123
AvaII GGWCC 2 cut(s) 102, 558
BaeGI GKGCMC 1 cut(s) 249
BanI GGYRCC 1 cut(s) 620
BanII GRGCYC 2 cut(s) 261, 498
BbsI GAAGAC 1 cut(s) 1058
BbvI GCAGC 6 cut(s) 74, 317, 325, 489, 510, 793
BccI CCATC 3 cut(s) 569, 649, 959
BceAI ACGGC 1 cut(s) 849
BciVI GTATCC 1 cut(s) 568
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 3 cut(s) 84, 181, 296
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 524
BfuAI ACCTGC 2 cut(s) 307, 865
BfuI GTATCC 1 cut(s) 568
BisI GCNGC 7 cut(s) 63, 180, 331, 339, 503, 524, 807
BlsI GCNGC 7 cut(s) 64, 181, 332, 340, 504, 525, 808
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 2 cut(s) 102, 558
BmgBI CACGTC 1 cut(s) 793
BmgT120I GGNCC 2 cut(s) 102, 558
BmiI GGNNCC 2 cut(s) 559, 622
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 4 cut(s) 125, 325, 415, 502
BoxI GACNNNNGTC 1 cut(s) 875
BpiI GAAGAC 1 cut(s) 1058
BplI GAGNNNNNCTC 2 cut(s) 803, 835
BpmI CTGGAG 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 357
BsaAI YACGTR 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 533
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 616, 865
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bsc4I CCNNNNNNNGG 5 cut(s) 254, 255, 312, 554, 1013
Bse1I ACTGG 3 cut(s) 78, 370, 583
Bse3DI GCAATG 1 cut(s) 624
Bse8I GATNNNNATC 1 cut(s) 533
BseDI CCNNGG 2 cut(s) 616, 865
BseGI GGATG 3 cut(s) 430, 594, 904
BseJI GATNNNNATC 1 cut(s) 533
BseLI CCNNNNNNNGG 5 cut(s) 254, 255, 312, 554, 1013
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 6 cut(s) 244, 274, 483, 644, 801, 1053
BseNI ACTGG 3 cut(s) 78, 370, 583
BseRI GAGGAG 1 cut(s) 1010
BseSI GKGCMC 1 cut(s) 249
BseXI GCAGC 6 cut(s) 74, 317, 325, 489, 510, 793
BsgI GTGCAG 1 cut(s) 705
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 3 cut(s) 7, 221, 895
BshNI GGYRCC 1 cut(s) 620
BsiEI CGRYCG 1 cut(s) 345
BsiSI CCGG 2 cut(s) 357, 896
BslFI GGGAC 4 cut(s) 461, 479, 571, 883
BslI CCNNNNNNNGG 5 cut(s) 254, 255, 312, 554, 1013
BsmAI GTCTC 3 cut(s) 84, 181, 296
BsmFI GGGAC 4 cut(s) 461, 479, 571, 883
BsnI GGCC 3 cut(s) 7, 221, 895
Bso31I GGTCTC 1 cut(s) 296
Bsp1286I GDGCHC 3 cut(s) 249, 261, 498
Bsp143I GATC 2 cut(s) 676, 844
BspACI CCGC 6 cut(s) 65, 87, 123, 179, 279, 341
BspANI GGCC 3 cut(s) 7, 221, 895
BspCNI CTCAG 6 cut(s) 243, 273, 484, 643, 802, 1054
BspLI GGNNCC 2 cut(s) 559, 622
BspMAI CTGCAG 1 cut(s) 528
BspMI ACCTGC 2 cut(s) 307, 865
BspPI GGATC 2 cut(s) 684, 839
BspT107I GGYRCC 1 cut(s) 620
BspTNI GGTCTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 624
BsrI ACTGG 3 cut(s) 78, 370, 583
BssECI CCNNGG 2 cut(s) 616, 865
BssMI GATC 2 cut(s) 676, 844
BssT1I CCWWGG 1 cut(s) 616
Bst4CI ACNGT 5 cut(s) 325, 470, 695, 982, 1130
Bst6I CTCTTC 2 cut(s) 179, 987
BstBAI YACGTR 1 cut(s) 533
BstC8I GCNNGC 3 cut(s) 9, 135, 277
BstDEI CTNAG 7 cut(s) 23, 230, 260, 492, 630, 810, 1062
BstDSI CCRYGG 1 cut(s) 865
BstF5I GGATG 3 cut(s) 430, 594, 904
BstKTI GATC 2 cut(s) 679, 847
BstMAI GTCTC 3 cut(s) 84, 181, 296
BstMBI GATC 2 cut(s) 676, 844
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 7 cut(s) 13, 43, 59, 122, 276, 344, 502
BstPAI GACNNNNGTC 1 cut(s) 875
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 524
BstSLI GKGCMC 1 cut(s) 249
BstSNI TACGTA 1 cut(s) 533
BstV1I GCAGC 6 cut(s) 74, 317, 325, 489, 510, 793
BstV2I GAAGAC 1 cut(s) 1058
BstX2I RGATCY 1 cut(s) 676
BstYI RGATCY 1 cut(s) 676
BsuI GTATCC 1 cut(s) 568
BsuRI GGCC 3 cut(s) 7, 221, 895
BtgI CCRYGG 1 cut(s) 865
BtgZI GCGATG 1 cut(s) 348
BtrI CACGTC 1 cut(s) 793
BtsCI GGATG 3 cut(s) 430, 594, 904
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 2 cut(s) 11, 321
BveI ACCTGC 2 cut(s) 307, 865
Cac8I GCNNGC 3 cut(s) 9, 135, 277
CaiI CAGNNNCTG 1 cut(s) 809
Cfr13I GGNCC 2 cut(s) 102, 558
CseI GACGC 2 cut(s) 42, 880
Csp6I GTAC 3 cut(s) 373, 621, 639
CviAII CATG 1 cut(s) 960
CviQI GTAC 3 cut(s) 373, 621, 639
DdeI CTNAG 7 cut(s) 23, 230, 260, 492, 630, 810, 1062
DpnI GATC 2 cut(s) 678, 846
DpnII GATC 2 cut(s) 676, 844
DraI TTTAAA 1 cut(s) 438
Eam1104I CTCTTC 2 cut(s) 179, 987
EarI CTCTTC 2 cut(s) 179, 987
EciI GGCGGA 1 cut(s) 102
Eco105I TACGTA 1 cut(s) 533
Eco130I CCWWGG 1 cut(s) 616
Eco147I AGGCCT 1 cut(s) 221
Eco24I GRGCYC 2 cut(s) 261, 498
Eco31I GGTCTC 1 cut(s) 296
Eco47I GGWCC 2 cut(s) 102, 558
Eco57I CTGAAG 1 cut(s) 683
EcoRI GAATTC 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 616
EcoT22I ATGCAT 1 cut(s) 430
EcoT38I GRGCYC 2 cut(s) 261, 498
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 1 cut(s) 963
FaqI GGGAC 4 cut(s) 461, 479, 571, 883
FatI CATG 1 cut(s) 959
Fnu4HI GCNGC 7 cut(s) 63, 180, 331, 339, 503, 524, 807
FokI GGATG 3 cut(s) 437, 601, 911
FriOI GRGCYC 2 cut(s) 261, 498
Fsp4HI GCNGC 7 cut(s) 63, 180, 331, 339, 503, 524, 807
FspBI CTAG 1 cut(s) 50
GluI GCNGC 7 cut(s) 63, 180, 331, 339, 503, 524, 807
GsuI CTGGAG 1 cut(s) 61
HaeIII GGCC 3 cut(s) 7, 221, 895
HapII CCGG 2 cut(s) 357, 896
HgaI GACGC 2 cut(s) 42, 880
Hin1II CATG 1 cut(s) 963
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 4 cut(s) 92, 97, 189, 800
HpaII CCGG 2 cut(s) 357, 896
HphI GGTGA 5 cut(s) 132, 371, 931, 1049, 1123
Hpy166II GTNNAC 1 cut(s) 473
Hpy188I TCNGA 8 cut(s) 34, 102, 233, 263, 633, 663, 781, 912
Hpy188III TCNNGA 2 cut(s) 652, 848
Hpy8I GTNNAC 1 cut(s) 473
Hpy99I CGWCG 2 cut(s) 58, 133
HpyAV CCTTC 4 cut(s) 168, 589, 658, 1007
HpyCH4III ACNGT 5 cut(s) 325, 470, 695, 982, 1130
HpyCH4IV ACGT 2 cut(s) 532, 792
HpyCH4V TGCA 5 cut(s) 62, 116, 428, 526, 686
HpyF10VI GCNNNNNNNGC 7 cut(s) 13, 43, 59, 122, 276, 344, 502
HpyF3I CTNAG 7 cut(s) 23, 230, 260, 492, 630, 810, 1062
HpySE526I ACGT 2 cut(s) 532, 792
Hsp92II CATG 1 cut(s) 963
KpnI GGTACC 1 cut(s) 624
Kzo9I GATC 2 cut(s) 676, 844
Lsp1109I GCAGC 6 cut(s) 74, 317, 325, 489, 510, 793
LweI GCATC 4 cut(s) 125, 325, 415, 502
MaeI CTAG 1 cut(s) 50
MaeII ACGT 2 cut(s) 532, 792
MaeIII GTNAC 2 cut(s) 319, 487
MalI GATC 2 cut(s) 678, 846
MboI GATC 2 cut(s) 676, 844
MboII GAAGA 8 cut(s) 33, 196, 934, 1004, 1013, 1031, 1054, 1063
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 3 cut(s) 249, 261, 498
MluCI AATT 9 cut(s) 365, 439, 476, 647, 707, 905, 925, 935, 1082
MlyI GAGTC 3 cut(s) 86, 91, 183
Mph1103I ATGCAT 1 cut(s) 430
MseI TTAA 3 cut(s) 206, 437, 890
MspA1I CMGCKG 2 cut(s) 65, 806
MspI CCGG 2 cut(s) 357, 896
MspR9I CCNGG 1 cut(s) 357
MwoI GCNNNNNNNGC 7 cut(s) 13, 43, 59, 122, 276, 344, 502
NciI CCSGG 1 cut(s) 357
NdeII GATC 2 cut(s) 676, 844
NlaIII CATG 1 cut(s) 963
NlaIV GGNNCC 2 cut(s) 559, 622
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 2 cut(s) 319, 487
NsiI ATGCAT 1 cut(s) 430
PceI AGGCCT 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PfeI GAWTC 1 cut(s) 800
PflMI CCANNNNNTGG 1 cut(s) 554
PkrI GCNGC 7 cut(s) 64, 181, 332, 340, 504, 525, 808
PleI GAGTC 3 cut(s) 86, 91, 183
PpsI GAGTC 3 cut(s) 86, 91, 183
Ppu21I YACGTR 1 cut(s) 533
PshAI GACNNNNGTC 1 cut(s) 875
PspN4I GGNNCC 2 cut(s) 559, 622
PspPI GGNCC 2 cut(s) 102, 558
PstI CTGCAG 1 cut(s) 528
PstNI CAGNNNCTG 1 cut(s) 809
PsuI RGATCY 1 cut(s) 676
PvuII CAGCTG 1 cut(s) 806
RsaI GTAC 3 cut(s) 374, 622, 640
RsaNI GTAC 3 cut(s) 373, 621, 639
SaqAI TTAA 3 cut(s) 206, 437, 890
SatI GCNGC 7 cut(s) 63, 180, 331, 339, 503, 524, 807
Sau3AI GATC 2 cut(s) 676, 844
Sau96I GGNCC 2 cut(s) 102, 558
SchI GAGTC 3 cut(s) 86, 91, 183
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 3 cut(s) 249, 261, 498
SfaNI GCATC 4 cut(s) 125, 325, 415, 502
SfcI CTRYAG 1 cut(s) 524
SinI GGWCC 2 cut(s) 102, 558
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SnaBI TACGTA 1 cut(s) 533
Sse9I AATT 9 cut(s) 365, 439, 476, 647, 707, 905, 925, 935, 1082
SseBI AGGCCT 1 cut(s) 221
SsiI CCGC 6 cut(s) 65, 87, 123, 179, 279, 341
SspMI CTAG 1 cut(s) 50
StuI AGGCCT 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 5 cut(s) 325, 470, 695, 982, 1130
TaiI ACGT 2 cut(s) 535, 795
TaqI TCGA 2 cut(s) 95, 161
TasI AATT 9 cut(s) 365, 439, 476, 647, 707, 905, 925, 935, 1082
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 3 cut(s) 206, 437, 890
Tru9I TTAA 3 cut(s) 206, 437, 890
TscAI CASTG 2 cut(s) 18, 328
TseFI GTSAC 2 cut(s) 319, 487
TseI GCWGC 6 cut(s) 62, 330, 338, 502, 523, 806
Tsp45I GTSAC 2 cut(s) 319, 487
TspDTI ATGAA 2 cut(s) 156, 1107
TspGWI ACGGA 1 cut(s) 587
TspRI CASTG 2 cut(s) 18, 328
Van91I CCANNNNNTGG 1 cut(s) 554
VpaK11BI GGWCC 2 cut(s) 102, 558
XapI RAATTY 3 cut(s) 365, 647, 905
XspI CTAG 1 cut(s) 50
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.