RLG00000031514

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001272
Physical Location & Seq
Forward (+)
5790234 .. 5792416
2183 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031514

Sequence Viewer

Length: 438 bp
ATGAGCTTGGTGAGGAGTGAAAGTGATCGGCTGCGAAATCCCAACAAGGCCTTGAACCTCAGAAGTGCCTTTGTGCCCCAAAATGGGCTCAGAAAGGGCTTCGCTTGCGGTGGATTGAAATGGAGGCTTGAGACCCAAAATAGGCAGGTCACTGTTCGCTGCGATGCTGCGGTCGCCGATACGCCCGGTGAGGAATTCCAGTACCAAGCCGAGGTCAGTCAGCTAATGGATTTGATAGTGCACAGTCTATACGGCCACAAGAAGGTGTTCCTTAGGGAGCGTGTTAGTAATGCAAGTGATGCTTTGGACAAGTTGAGATTTTTGAGTGTGACTGAGCCCTCGCTGCTTGGAGATGCTGTTGAGCTGCAGATACGTATCAAACCCGACCCAGAGAATGGGACTATCACTATAACGTATGTTGCTGCTAAATTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

146

Amino Acids

16.29

Weight (kDa)

9.0

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AccB7I CCANNNNNTGG 1 cut(s) 395
AciI CCGC 2 cut(s) 108, 170
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 2 cut(s) 194, 428
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 6 cut(s) 83, 84, 141, 211, 262, 395
AgsI TTSAA 2 cut(s) 55, 118
AluBI AGCT 3 cut(s) 6, 223, 364
AluI AGCT 3 cut(s) 6, 223, 364
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 125
Alw44I GTGCAC 1 cut(s) 239
AoxI GGCC 2 cut(s) 48, 253
ApaLI GTGCAC 1 cut(s) 239
ApeKI GCWGC 6 cut(s) 31, 159, 167, 343, 364, 422
ApoI RAATTY 2 cut(s) 194, 428
Asp700I GAANNNNTTC 1 cut(s) 266
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 2 cut(s) 22, 200
AxyI CCTNAGG 1 cut(s) 272
BaeGI GKGCMC 2 cut(s) 78, 243
BanII GRGCYC 2 cut(s) 90, 339
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 6 cut(s) 18, 146, 154, 330, 351, 409
BceAI ACGGC 1 cut(s) 268
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 365
BfuAI ACCTGC 1 cut(s) 136
BisI GCNGC 6 cut(s) 32, 160, 168, 344, 365, 423
BlsI GCNGC 6 cut(s) 33, 161, 169, 345, 366, 424
Bme1390I CCNGG 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 3 cut(s) 154, 289, 343
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 186
BsaAI YACGTR 1 cut(s) 374
BsaBI GATNNNNATC 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 210
BsaXI ACNNNNNCTCC 4 cut(s) 7, 37, 342, 372
Bsc4I CCNNNNNNNGG 6 cut(s) 83, 84, 141, 211, 262, 395
Bse1I ACTGG 1 cut(s) 199
Bse21I CCTNAGG 1 cut(s) 272
Bse8I GATNNNNATC 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 210
BseJI GATNNNNATC 1 cut(s) 374
BseLI CCNNNNNNNGG 6 cut(s) 83, 84, 141, 211, 262, 395
BseMII CTCAG 3 cut(s) 73, 103, 324
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 28
BseSI GKGCMC 2 cut(s) 78, 243
BseXI GCAGC 6 cut(s) 18, 146, 154, 330, 351, 409
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 50, 255
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 6 cut(s) 83, 84, 141, 211, 262, 395
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 412
BsnI GGCC 2 cut(s) 50, 255
Bso31I GGTCTC 1 cut(s) 125
Bsp1286I GDGCHC 4 cut(s) 78, 90, 243, 339
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 2 cut(s) 108, 170
BspANI GGCC 2 cut(s) 50, 255
BspCNI CTCAG 3 cut(s) 72, 102, 325
BspMAI CTGCAG 1 cut(s) 369
BspMI ACCTGC 1 cut(s) 136
BspTNI GGTCTC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 1 cut(s) 25
Bst4CI ACNGT 2 cut(s) 154, 245
BstAPI GCANNNNNTGC 1 cut(s) 299
BstBAI YACGTR 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 4 cut(s) 59, 89, 272, 333
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 25
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 4 cut(s) 105, 173, 299, 343
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 365
BstSLI GKGCMC 2 cut(s) 78, 243
BstSNI TACGTA 1 cut(s) 374
BstV1I GCAGC 6 cut(s) 18, 146, 154, 330, 351, 409
Bsu36I CCTNAGG 1 cut(s) 272
BsuRI GGCC 2 cut(s) 50, 255
BtgZI GCGATG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 202
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 4 cut(s) 59, 89, 272, 333
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 253
Eco105I TACGTA 1 cut(s) 374
Eco147I AGGCCT 1 cut(s) 50
Eco24I GRGCYC 2 cut(s) 90, 339
Eco31I GGTCTC 1 cut(s) 125
Eco81I CCTNAGG 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 194
EcoT38I GRGCYC 2 cut(s) 90, 339
FaiI YATR 3 cut(s) 250, 410, 417
FalI AAGNNNNNCTT 2 cut(s) 286, 318
FaqI GGGAC 1 cut(s) 412
Fnu4HI GCNGC 6 cut(s) 32, 160, 168, 344, 365, 423
FriOI GRGCYC 2 cut(s) 90, 339
Fsp4HI GCNGC 6 cut(s) 32, 160, 168, 344, 365, 423
GluI GCNGC 6 cut(s) 32, 160, 168, 344, 365, 423
HaeIII GGCC 2 cut(s) 50, 255
HapII CCGG 1 cut(s) 186
HpaII CCGG 1 cut(s) 186
HphI GGTGA 2 cut(s) 22, 200
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 62, 92
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 2 cut(s) 154, 245
HpyCH4IV ACGT 2 cut(s) 373, 413
HpyCH4V TGCA 3 cut(s) 241, 293, 367
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 173, 299, 343
HpyF3I CTNAG 4 cut(s) 59, 89, 272, 333
HpySE526I ACGT 2 cut(s) 373, 413
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 4 cut(s) 131, 199, 212, 402
Lsp1109I GCAGC 6 cut(s) 18, 146, 154, 330, 351, 409
LweI GCATC 3 cut(s) 154, 289, 343
MaeII ACGT 2 cut(s) 373, 413
MaeIII GTNAC 2 cut(s) 148, 328
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MhlI GDGCHC 4 cut(s) 78, 90, 243, 339
MluCI AATT 2 cut(s) 194, 428
MnlI CCTC 6 cut(s) 6, 68, 117, 184, 205, 349
MroXI GAANNNNTTC 1 cut(s) 266
MseI TTAA 1 cut(s) 436
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 186
MwoI GCNNNNNNNGC 4 cut(s) 105, 173, 299, 343
NciI CCSGG 1 cut(s) 186
NdeII GATC 1 cut(s) 25
NmeAIII GCCGAG 1 cut(s) 235
NmuCI GTSAC 2 cut(s) 148, 328
PceI AGGCCT 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 266
PflMI CCANNNNNTGG 1 cut(s) 395
PkrI GCNGC 6 cut(s) 33, 161, 169, 345, 366, 424
Ppu21I YACGTR 1 cut(s) 374
PstI CTGCAG 1 cut(s) 369
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SaqAI TTAA 1 cut(s) 436
SatI GCNGC 6 cut(s) 32, 160, 168, 344, 365, 423
Sau3AI GATC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 4 cut(s) 78, 90, 243, 339
SetI ASST 9 cut(s) 8, 60, 150, 216, 225, 267, 366, 376, 416
SfaNI GCATC 3 cut(s) 154, 289, 343
SfcI CTRYAG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SnaBI TACGTA 1 cut(s) 374
Sse9I AATT 2 cut(s) 194, 428
SseBI AGGCCT 1 cut(s) 50
SsiI CCGC 2 cut(s) 108, 170
StuI AGGCCT 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 184
TaaI ACNGT 2 cut(s) 154, 245
TaiI ACGT 2 cut(s) 376, 416
TasI AATT 2 cut(s) 194, 428
Tru1I TTAA 1 cut(s) 436
Tru9I TTAA 1 cut(s) 436
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 2 cut(s) 148, 328
TseI GCWGC 6 cut(s) 31, 159, 167, 343, 364, 422
Tsp45I GTSAC 2 cut(s) 148, 328
TspRI CASTG 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 395
VneI GTGCAC 1 cut(s) 239
XapI RAATTY 2 cut(s) 194, 428
XmnI GAANNNNTTC 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.