Rorug02G0184900

RNA uridylyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001272
Physical Location & Seq
Forward (+)
17196075 .. 17197449
1375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0184900.1

Sequence Viewer

Length: 540 bp
ATGGTGGGTCAGTGGACGGTGGCGAAGCCAAGCCGGAGCGACGACGTTTTGGATGCCGACGAACAGCTCAGGATCGCCACCCAGATCAAAGCTCAGTTCGACTCTGCAGCGCCAAAGCGACCCATGAAGCCGAATCGAAGCGAACCCGATTCACCAGCTCCAGCTCTCTCCATCGTTGACCCAACCAACATTCCTGAGCTTGACAAGCTTCGTACTCTTCAGTCTCAATCCCATGTCAGAATCTCAGATGAGGGAGCTAGCATCATGGTACAAGATGAGTTTGTGGATACCCAATATTACAAGGAACTGAATTCCATTGACAAACAGCATCACATGACTGGGACTGGGTTTATAAGGGTGGAGAGGGAAGAAGAGGGAAATGAAGATGGCTATGATATTCAGTTGAATGGAATTCATGGTGGTTCAAATGGTATAGTGCGGGTTGGTTTCAGAAGCAACCCTGCAACAAATGACTGGATTCCCAAGACTGATGAAGATCTGGTCTTCATTTCCTCAAAGCCAAATCGAAGTGAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

179

Amino Acids

20.0

Weight (kDa)

4.83

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
AciI CCGC 1 cut(s) 439
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 2 cut(s) 310, 411
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 2 cut(s) 214, 270
AgsI TTSAA 2 cut(s) 406, 426
AluBI AGCT 7 cut(s) 67, 92, 158, 164, 199, 208, 257
AluI AGCT 7 cut(s) 67, 92, 158, 164, 199, 208, 257
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 2 cut(s) 310, 411
AspLEI GCGC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 144
AsuNHI GCTAGC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 496
BbvI GCAGC 1 cut(s) 119
BccI CCATC 2 cut(s) 179, 380
BciVI GTATCC 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 113
BfuI GTATCC 1 cut(s) 280
BglII AGATCT 1 cut(s) 496
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmrI ACTGGG 2 cut(s) 348, 354
BmsI GCATC 3 cut(s) 43, 270, 337
BmtI GCTAGC 1 cut(s) 261
BmuI ACTGGG 2 cut(s) 348, 354
BpiI GAAGAC 1 cut(s) 496
BpmI CTGGAG 1 cut(s) 144
Bpu10I CCTNAGC 2 cut(s) 68, 195
BsaBI GATNNNNATC 1 cut(s) 495
Bse1I ACTGG 3 cut(s) 343, 349, 479
Bse8I GATNNNNATC 1 cut(s) 495
BseGI GGATG 1 cut(s) 58
BseJI GATNNNNATC 1 cut(s) 495
BseMII CTCAG 4 cut(s) 82, 107, 186, 258
BseNI ACTGG 3 cut(s) 343, 349, 479
BseXI GCAGC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 355
Bsp143I GATC 3 cut(s) 72, 84, 496
BspACI CCGC 1 cut(s) 439
BspCNI CTCAG 4 cut(s) 81, 106, 187, 257
BspMAI CTGCAG 1 cut(s) 109
BspOI GCTAGC 1 cut(s) 261
BspPI GGATC 1 cut(s) 80
BsrI ACTGG 3 cut(s) 343, 349, 479
BssMI GATC 3 cut(s) 72, 84, 496
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 2 cut(s) 222, 366
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 4 cut(s) 68, 93, 195, 244
BstF5I GGATG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 3 cut(s) 75, 87, 499
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 3 cut(s) 72, 84, 496
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 496
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BsuI GTATCC 1 cut(s) 280
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 259
CfoI GCGC 1 cut(s) 112
Csp6I GTAC 2 cut(s) 213, 269
CviAII CATG 5 cut(s) 124, 233, 265, 334, 416
CviQI GTAC 2 cut(s) 213, 269
DdeI CTNAG 4 cut(s) 68, 93, 195, 244
DpnI GATC 3 cut(s) 74, 86, 498
DpnII GATC 3 cut(s) 72, 84, 496
Eam1104I CTCTTC 2 cut(s) 222, 366
EarI CTCTTC 2 cut(s) 222, 366
Eco57I CTGAAG 1 cut(s) 203
EcoRI GAATTC 2 cut(s) 310, 411
FaeI CATG 5 cut(s) 127, 236, 268, 337, 419
FaiI YATR 8 cut(s) 125, 234, 266, 335, 353, 393, 417, 434
FaqI GGGAC 1 cut(s) 355
FatI CATG 5 cut(s) 123, 232, 264, 333, 415
FauI CCCGC 1 cut(s) 432
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 258
GlaI GCGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 113
HapII CCGG 1 cut(s) 34
HhaI GCGC 1 cut(s) 112
Hin1II CATG 5 cut(s) 127, 236, 268, 337, 419
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 5 cut(s) 101, 133, 149, 240, 478
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 144
Hpy166II GTNNAC 2 cut(s) 15, 178
Hpy188I TCNGA 3 cut(s) 239, 247, 452
Hpy188III TCNNGA 2 cut(s) 70, 194
Hpy8I GTNNAC 2 cut(s) 15, 178
Hpy99I CGWCG 3 cut(s) 44, 47, 62
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 107, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 4 cut(s) 68, 93, 195, 244
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 5 cut(s) 127, 236, 268, 337, 419
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 3 cut(s) 72, 84, 496
LmnI GCTCC 3 cut(s) 36, 163, 254
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 3 cut(s) 43, 270, 337
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 45
MalI GATC 3 cut(s) 74, 86, 498
MboI GATC 3 cut(s) 72, 84, 496
MboII GAAGA 6 cut(s) 209, 380, 383, 395, 496, 506
MflI RGATCY 1 cut(s) 496
MluCI AATT 2 cut(s) 310, 411
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 4 cut(s) 244, 357, 367, 523
MspI CCGG 1 cut(s) 34
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 3 cut(s) 72, 84, 496
NheI GCTAGC 1 cut(s) 257
NlaIII CATG 5 cut(s) 127, 236, 268, 337, 419
PfeI GAWTC 4 cut(s) 133, 149, 240, 478
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PsiI TTATAA 1 cut(s) 353
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 496
RsaI GTAC 2 cut(s) 214, 270
RsaNI GTAC 2 cut(s) 213, 269
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 3 cut(s) 72, 84, 496
SchI GAGTC 1 cut(s) 95
SetI ASST 8 cut(s) 48, 69, 94, 160, 166, 201, 210, 259
SfaNI GCATC 3 cut(s) 43, 270, 337
SfcI CTRYAG 1 cut(s) 105
Sse9I AATT 2 cut(s) 310, 411
SsiI CCGC 1 cut(s) 439
SspI AATATT 1 cut(s) 296
SspMI CTAG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 19
TaiI ACGT 1 cut(s) 48
TaqI TCGA 3 cut(s) 99, 136, 526
TasI AATT 2 cut(s) 310, 411
TfiI GAWTC 4 cut(s) 133, 149, 240, 478
TscAI CASTG 1 cut(s) 17
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 5 cut(s) 140, 396, 404, 496, 507
TspRI CASTG 1 cut(s) 17
XapI RAATTY 2 cut(s) 310, 411
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.