Rw3G013500

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001272
Physical Location & Seq
Forward (+)
13342538 .. 13360785
18248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G013500.1

Sequence Viewer

Length: 1413 bp
ATGAAAACCACGAATTCGCCCTCGGCTCAAAAAACTCACCCAAAATGGAGGCGCTCTCTCTCTCTCGTCCTCCCTCTATATCCATCATCGCAAACACCCAAAATCACCTACCCATGTAATCATCAGATCTTCCACCTTCGAATTTCCGATGGCGTTTCCCTACACAAACCTCACGCTCTTTCTCTCTCTACCGTCTCCCTCGCCTTTTCCACAGCATCTCTTGCTTCACTTCCTTCTTTGACTCTCAGAAACCCCAACAAGGCCTTGAACCTCAGAAGTGCCTTTGTGCCCCAAAATGGGCTCAGAAAGGGCTTCGCTTGCGGTGGATTGAAATGGAGGCTTGAGACCCAAAATAGGCAGGTCACTGTTCGCTGCGATGCTGCGGTCGCCGATACGCCCGGTGAGGAATTCCAGTACCAAGCCGAGGTCAGTGGGCTAATGGATTTGATAGTGCACAGTCTATACAGCCACAAGAAGGTATTCCTTAGGGAGGGTGTTAGAAATGCAAGTGATGCTTTGGACAAGTTGAGATTTTTGAGTCTGCAGATACGCATCAAACCCGACCCAGAGAATGGGACTATCACTATAACGGATACTGGTATTGGGATGACGAAGGAGGAACTCATTGACTGCCTTGGTACCATTGCTCAGAGTGGTACTTCAAAATTCTTTACGGCTCTGAAGGAAAATAAGGATCTTGGTGCAGACAACGGTTTGATTGGTCAATTTGGTATTGGGTTCTATTCTACTTTTCTTGTTGCTGACAAGGTGCAGTTTTGGTTTCACACTTTTTTTAGTATTACACAATACGTCTGGGAATCAGCTACTGAGAGTAGCTCTTACATGATTAGGGTAGAAACTGATCCAGAAAATATCATTAGCCGTGGGACGCAGATCAAACTATATTTAAGGCCGGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGGTTGAAGAGGAGGAAGAACCAAAGGAAGGAGAAGAACCAAAGCCAGAGTTAATTGACATGCAATCTGAAGGTGAGAAGAAAAAGAAGACTATAACTGAGAAGTATTGGGATTGGGAATTAGCCAATGAAACAAAGCCTATATGGGTGAGGTCTTTTACTGCGTTTCGGAAACACGCCGTAAAAGAGTTTTATCTTTTACGGCATGTCCATTTACGGCGCATTTTTGTTGATTATGGTGCGCCTGCATATATCACAAATACTAAATCTAAACAAAACATAAAGTTACATAAATCAGTAGATTCAGTAGTCAGTACCCAACTACCCACTAACCAAAATAGTGAAATACCAATTCAAACTTCCAATCCTGAGTGGGTGGCCATGCTCCCCCTCCGTGTTTTCAGAAAAACTAAAACAAAAAAAAAAATTATTAAAAAAAAAAAACTGAGGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

470

Amino Acids

53.51

Weight (kDa)

9.45

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 162 - 259 9e-07 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90 PF00183 321 - 384 2.1e-08 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 349
Acc65I GGTACC 1 cut(s) 638
AccB1I GGYRCC 1 cut(s) 638
AccB7I CCANNNNNTGG 2 cut(s) 572, 958
AciI CCGC 2 cut(s) 321, 383
AclWI GGATC 4 cut(s) 702, 857, 943, 956
AcoI YGGCCR 1 cut(s) 1335
AcsI RAATTY 4 cut(s) 13, 141, 407, 665
AcuI CTGAAG 2 cut(s) 701, 1047
AfaI GTAC 4 cut(s) 416, 640, 658, 1273
AgsI TTSAA 5 cut(s) 268, 331, 663, 965, 1313
AjuI GAANNNNNNNTTGG 2 cut(s) 1300, 1332
AluBI AGCT 2 cut(s) 824, 837
AluI AGCT 2 cut(s) 824, 837
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 2 cut(s) 199, 338
Alw44I GTGCAC 1 cut(s) 452
AlwI GGATC 4 cut(s) 702, 857, 943, 956
AlwNI CAGNNNCTG 2 cut(s) 827, 941
AoxI GGCC 3 cut(s) 261, 911, 1335
ApaLI GTGCAC 1 cut(s) 452
ApeKI GCWGC 2 cut(s) 372, 380
ApoI RAATTY 4 cut(s) 13, 141, 407, 665
Asp700I GAANNNNTTC 1 cut(s) 479
Asp718I GGTACC 1 cut(s) 638
AspLEI GCGC 3 cut(s) 54, 1179, 1201
AsuC2I CCSGG 2 cut(s) 399, 946
AsuHPI GGTGA 5 cut(s) 29, 97, 413, 1043, 1117
AsuII TTCGAA 1 cut(s) 139
AxyI CCTNAGG 1 cut(s) 485
BaeGI GKGCMC 2 cut(s) 291, 456
BalI TGGCCA 1 cut(s) 1337
BamHI GGATCC 1 cut(s) 948
BanI GGYRCC 1 cut(s) 638
BanII GRGCYC 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 1052
Bbv12I GWGCWC 1 cut(s) 456
BbvI GCAGC 2 cut(s) 359, 367
BccI CCATC 2 cut(s) 91, 143
BceAI ACGGC 5 cut(s) 690, 867, 1121, 1175, 1190
BciVI GTATCC 1 cut(s) 586
BcnI CCSGG 2 cut(s) 399, 946
BcoDI GTCTC 2 cut(s) 199, 338
BfmI CTRYAG 1 cut(s) 542
BfoI RGCGCY 1 cut(s) 55
BfuAI ACCTGC 1 cut(s) 349
BfuI GTATCC 1 cut(s) 586
BglII AGATCT 1 cut(s) 126
BisI GCNGC 2 cut(s) 373, 381
BlsI GCNGC 2 cut(s) 374, 382
Bme1390I CCNGG 2 cut(s) 399, 946
BmiI GGNNCC 2 cut(s) 640, 950
BmrFI CCNGG 2 cut(s) 399, 946
BmsI GCATC 4 cut(s) 224, 367, 502, 561
BpiI GAAGAC 1 cut(s) 1052
BplI GAGNNNNNCTC 4 cut(s) 40, 72, 821, 853
Bpu14I TTCGAA 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 2 cut(s) 399, 946
BsaBI GATNNNNATC 1 cut(s) 551
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 4 cut(s) 21, 423, 634, 883
Bse1I ACTGG 2 cut(s) 412, 601
Bse21I CCTNAGG 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 642
Bse8I GATNNNNATC 1 cut(s) 551
BseDI CCNNGG 4 cut(s) 21, 423, 634, 883
BseGI GGATG 2 cut(s) 612, 922
BseJI GATNNNNATC 1 cut(s) 551
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 9 cut(s) 259, 286, 316, 662, 819, 948, 1047, 1317, 1394
BseNI ACTGG 2 cut(s) 412, 601
BseRI GAGGAG 1 cut(s) 983
BseSI GKGCMC 2 cut(s) 291, 456
BseXI GCAGC 2 cut(s) 359, 367
BsgI GTGCAG 2 cut(s) 723, 791
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 3 cut(s) 263, 913, 1337
BshNI GGYRCC 1 cut(s) 638
BsiEI CGRYCG 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 456
BsiSI CCGG 3 cut(s) 399, 914, 946
BslFI GGGAC 2 cut(s) 589, 901
BsmAI GTCTC 2 cut(s) 199, 338
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 2 cut(s) 589, 901
BsnI GGCC 3 cut(s) 263, 913, 1337
Bso31I GGTCTC 1 cut(s) 338
Bsp119I TTCGAA 1 cut(s) 139
Bsp1286I GDGCHC 3 cut(s) 291, 303, 456
Bsp143I GATC 5 cut(s) 126, 694, 862, 894, 948
BspACI CCGC 2 cut(s) 321, 383
BspANI GGCC 3 cut(s) 263, 913, 1337
BspCNI CTCAG 9 cut(s) 258, 285, 315, 661, 820, 947, 1048, 1318, 1395
BspLI GGNNCC 2 cut(s) 640, 950
BspMAI CTGCAG 1 cut(s) 546
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 4 cut(s) 702, 857, 943, 956
BspT104I TTCGAA 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 638
BspTNI GGTCTC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 642
BsrI ACTGG 2 cut(s) 412, 601
BssECI CCNNGG 4 cut(s) 21, 423, 634, 883
BssMI GATC 5 cut(s) 126, 694, 862, 894, 948
BssT1I CCWWGG 1 cut(s) 634
Bst4CI ACNGT 4 cut(s) 193, 367, 458, 713
Bst6I CTCTTC 1 cut(s) 960
BstAPI GCANNNNNTGC 2 cut(s) 221, 512
BstBI TTCGAA 1 cut(s) 139
BstC8I GCNNGC 3 cut(s) 319, 942, 1203
BstDSI CCRYGG 1 cut(s) 883
BstENI CCTNNNNNAGG 1 cut(s) 488
BstF5I GGATG 2 cut(s) 612, 922
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 3 cut(s) 54, 1179, 1201
BstKTI GATC 5 cut(s) 129, 697, 865, 897, 951
BstMAI GTCTC 2 cut(s) 199, 338
BstMBI GATC 5 cut(s) 126, 694, 862, 894, 948
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 4 cut(s) 221, 318, 386, 512
BstNSI RCATGY 2 cut(s) 1021, 1166
BstSCI CCNGG 2 cut(s) 397, 944
BstSFI CTRYAG 1 cut(s) 542
BstSLI GKGCMC 2 cut(s) 291, 456
BstV1I GCAGC 2 cut(s) 359, 367
BstV2I GAAGAC 1 cut(s) 1052
BstX2I RGATCY 3 cut(s) 126, 694, 948
BstYI RGATCY 3 cut(s) 126, 694, 948
Bsu36I CCTNAGG 1 cut(s) 485
BsuI GTATCC 1 cut(s) 586
BsuRI GGCC 3 cut(s) 263, 913, 1337
BtgI CCRYGG 1 cut(s) 883
BtgZI GCGATG 2 cut(s) 72, 390
BtsCI GGATG 2 cut(s) 612, 922
BtsIMutI CAGTG 2 cut(s) 363, 436
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 3 cut(s) 319, 942, 1203
CaiI CAGNNNCTG 2 cut(s) 827, 941
CfoI GCGC 3 cut(s) 54, 1179, 1201
CseI GACGC 1 cut(s) 898
Csp6I GTAC 4 cut(s) 415, 639, 657, 1272
CviAII CATG 5 cut(s) 114, 844, 1018, 1163, 1339
CviQI GTAC 4 cut(s) 415, 639, 657, 1272
DpnI GATC 5 cut(s) 128, 696, 864, 896, 950
DpnII GATC 5 cut(s) 126, 694, 862, 894, 948
EaeI YGGCCR 1 cut(s) 1335
Eam1104I CTCTTC 1 cut(s) 960
EarI CTCTTC 1 cut(s) 960
Eco130I CCWWGG 1 cut(s) 634
Eco147I AGGCCT 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 303
Eco31I GGTCTC 1 cut(s) 338
Eco57I CTGAAG 2 cut(s) 701, 1047
Eco81I CCTNAGG 1 cut(s) 485
EcoNI CCTNNNNNAGG 1 cut(s) 488
EcoRI GAATTC 2 cut(s) 13, 407
EcoT14I CCWWGG 1 cut(s) 634
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 634
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 5 cut(s) 117, 847, 1021, 1166, 1342
FalI AAGNNNNNCTT 2 cut(s) 499, 531
FaqI GGGAC 2 cut(s) 589, 901
FatI CATG 5 cut(s) 113, 843, 1017, 1162, 1338
Fnu4HI GCNGC 2 cut(s) 373, 381
FokI GGATG 2 cut(s) 619, 929
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 2 cut(s) 373, 381
GlaI GCGC 3 cut(s) 53, 1178, 1200
GluI GCNGC 2 cut(s) 373, 381
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 3 cut(s) 263, 913, 1337
HapII CCGG 3 cut(s) 399, 914, 946
HgaI GACGC 1 cut(s) 898
HhaI GCGC 3 cut(s) 54, 1179, 1201
Hin1II CATG 5 cut(s) 117, 847, 1021, 1166, 1342
Hin6I GCGC 3 cut(s) 52, 1177, 1199
HinP1I GCGC 3 cut(s) 52, 1177, 1199
HinfI GANTC 4 cut(s) 241, 538, 818, 1259
HpaII CCGG 3 cut(s) 399, 914, 946
HphI GGTGA 5 cut(s) 29, 97, 413, 1043, 1117
Hpy166II GTNNAC 1 cut(s) 454
Hpy188III TCNNGA 3 cut(s) 866, 952, 1325
Hpy8I GTNNAC 1 cut(s) 454
HpyAV CCTTC 7 cut(s) 146, 243, 469, 607, 676, 980, 1022
HpyCH4III ACNGT 4 cut(s) 193, 367, 458, 713
HpyCH4IV ACGT 1 cut(s) 810
HpyCH4V TGCA 7 cut(s) 454, 506, 544, 704, 772, 1021, 1205
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 318, 386, 512
HpySE526I ACGT 1 cut(s) 810
Hsp92II CATG 5 cut(s) 117, 847, 1021, 1166, 1342
HspAI GCGC 3 cut(s) 52, 1177, 1199
KpnI GGTACC 1 cut(s) 642
Kzo9I GATC 5 cut(s) 126, 694, 862, 894, 948
LmnI GCTCC 1 cut(s) 1347
Lsp1109I GCAGC 2 cut(s) 359, 367
LweI GCATC 4 cut(s) 224, 367, 502, 561
MaeII ACGT 1 cut(s) 810
MaeIII GTNAC 2 cut(s) 361, 1242
MalI GATC 5 cut(s) 128, 696, 864, 896, 950
MboI GATC 5 cut(s) 126, 694, 862, 894, 948
MboII GAAGA 6 cut(s) 121, 977, 986, 1004, 1048, 1057
MflI RGATCY 3 cut(s) 126, 694, 948
MhlI GDGCHC 3 cut(s) 291, 303, 456
MlsI TGGCCA 1 cut(s) 1337
MluCI AATT 9 cut(s) 13, 141, 407, 665, 725, 1011, 1076, 1308, 1383
MluNI TGGCCA 1 cut(s) 1337
MlyI GAGTC 2 cut(s) 235, 547
Mox20I TGGCCA 1 cut(s) 1337
MroXI GAANNNNTTC 1 cut(s) 479
MscI TGGCCA 1 cut(s) 1337
MseI TTAA 3 cut(s) 908, 1010, 1389
Msp20I TGGCCA 1 cut(s) 1337
MspI CCGG 3 cut(s) 399, 914, 946
MspR9I CCNGG 2 cut(s) 399, 946
MwoI GCNNNNNNNGC 4 cut(s) 221, 318, 386, 512
NciI CCSGG 2 cut(s) 399, 946
NdeII GATC 5 cut(s) 126, 694, 862, 894, 948
NlaIII CATG 5 cut(s) 117, 847, 1021, 1166, 1342
NlaIV GGNNCC 2 cut(s) 640, 950
NmeAIII GCCGAG 1 cut(s) 448
NmuCI GTSAC 1 cut(s) 361
NspI RCATGY 2 cut(s) 1021, 1166
NspV TTCGAA 1 cut(s) 139
PceI AGGCCT 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 2 cut(s) 818, 1259
PflMI CCANNNNNTGG 2 cut(s) 572, 958
PkrI GCNGC 2 cut(s) 374, 382
PleI GAGTC 2 cut(s) 235, 546
PpsI GAGTC 2 cut(s) 235, 546
PspN4I GGNNCC 2 cut(s) 640, 950
PstI CTGCAG 1 cut(s) 546
PstNI CAGNNNCTG 2 cut(s) 827, 941
PsuI RGATCY 3 cut(s) 126, 694, 948
RsaI GTAC 4 cut(s) 416, 640, 658, 1273
RsaNI GTAC 4 cut(s) 415, 639, 657, 1272
SaqAI TTAA 3 cut(s) 908, 1010, 1389
SatI GCNGC 2 cut(s) 373, 381
Sau3AI GATC 5 cut(s) 126, 694, 862, 894, 948
SchI GAGTC 2 cut(s) 235, 547
ScrFI CCNGG 2 cut(s) 399, 946
SduI GDGCHC 3 cut(s) 291, 303, 456
SfaNI GCATC 4 cut(s) 224, 367, 502, 561
SfcI CTRYAG 1 cut(s) 542
SfuI TTCGAA 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 9 cut(s) 13, 141, 407, 665, 725, 1011, 1076, 1308, 1383
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 2 cut(s) 321, 383
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 2 cut(s) 397, 944
StyI CCWWGG 1 cut(s) 634
TaaI ACNGT 4 cut(s) 193, 367, 458, 713
TaiI ACGT 1 cut(s) 813
TaqI TCGA 1 cut(s) 139
TasI AATT 9 cut(s) 13, 141, 407, 665, 725, 1011, 1076, 1308, 1383
TfiI GAWTC 2 cut(s) 818, 1259
Tru1I TTAA 3 cut(s) 908, 1010, 1389
Tru9I TTAA 3 cut(s) 908, 1010, 1389
TscAI CASTG 2 cut(s) 370, 436
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 2 cut(s) 372, 380
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 2 cut(s) 17, 1101
TspGWI ACGGA 2 cut(s) 605, 1340
TspRI CASTG 2 cut(s) 370, 436
Van91I CCANNNNNTGG 2 cut(s) 572, 958
VneI GTGCAC 1 cut(s) 452
XagI CCTNNNNNAGG 1 cut(s) 488
XapI RAATTY 4 cut(s) 13, 141, 407, 665
XceI RCATGY 2 cut(s) 1021, 1166
XmnI GAANNNNTTC 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.