Rh2AG219900

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001272
Physical Location & Seq
Forward (+)
22878064 .. 22886877
8814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG219900.1

Sequence Viewer

Length: 666 bp
ATGCTTTTGAATCTGATCTTTGTGCTTATATCTTATTTGGAAAATAAGGATCTTGGTGCAGACAACGGTTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCTTTTCTTGTTGCTGACAAGCAGGTGCAGTTTTGGTTTCACACTTTTTTTAGTCTTATGCCTTGTAAAAACTATCTGCTCATGGTTGAGCTTCTAGTCTGGATGACTGTCTTGAGCAGTAGCTCTTATGTGATTAGGGTAGAAACTGATCCAGAAAATATCATTAGCCGTGGGACGCAGATCAAACTATATTTAAGGCCTGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGGGGTTGATGTTAAACAAGGAAGGGTATGCTTCTATAGGAGGTGGTTCACCCTTGCGTAAGATGACAGATGAGCAGGCAAATGCACTGAAAATGGCTTTGGAATCAAAGGACATGCCGGTGAATGTCTATGTGGGAATGTGCTTCGGGACTCAACAAATACATGTAACCCTTTATATGACTGCAATTGCTTCCCAGTCCACTTTGGTGCAAAAACCTATTGTCAAGGTCTTACCAGAAAATGGCCTGGAGGTTAGGTTATCAGGGTCAGGAGTAACAGGGAGCCCTCCTACAACTGTCACCCACAATGTTGAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

221

Amino Acids

24.59

Weight (kDa)

5.63

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferrochelatase PF00762 122 - 173 3e-08 Ferrochelatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 115
Acc36I ACCTGC 1 cut(s) 115
AccB7I CCANNNNNTGG 2 cut(s) 346, 587
AclWI GGATC 4 cut(s) 57, 245, 331, 344
AfiI CCNNNNNNNGG 2 cut(s) 346, 587
AflIII ACRYGT 1 cut(s) 508
AgsI TTSAA 2 cut(s) 10, 659
AjnI CCWGG 1 cut(s) 591
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AleI CACNNNNGTG 1 cut(s) 551
AluBI AGCT 2 cut(s) 193, 225
AluI AGCT 2 cut(s) 193, 225
AlwI GGATC 4 cut(s) 57, 245, 331, 344
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 2 cut(s) 299, 589
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 3 cut(s) 387, 478, 637
BamHI GGATCC 1 cut(s) 336
BanII GRGCYC 1 cut(s) 632
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 593
BcnI CCSGG 1 cut(s) 334
BfaI CTAG 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 381
BfuAI ACCTGC 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 334, 593
BmiI GGNNCC 2 cut(s) 338, 629
BmrFI CCNGG 2 cut(s) 334, 593
BmrI ACTGGG 1 cut(s) 535
BmuI ACTGGG 1 cut(s) 535
BpmI CTGGAG 1 cut(s) 614
BpuEI CTTGAG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 587, 617
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 587
Bse118I RCCGGY 1 cut(s) 463
Bse1I ACTGG 1 cut(s) 541
BseBI CCWGG 1 cut(s) 593
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 2 cut(s) 346, 587
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 541
BsgI GTGCAG 2 cut(s) 78, 149
BshFI GGCC 2 cut(s) 301, 591
BsiSI CCGG 2 cut(s) 334, 464
BslFI GGGAC 2 cut(s) 289, 508
BslI CCNNNNNNNGG 2 cut(s) 346, 587
BsmFI GGGAC 2 cut(s) 289, 508
BsnI GGCC 2 cut(s) 301, 591
Bsp1286I GDGCHC 1 cut(s) 632
Bsp143I GATC 5 cut(s) 15, 49, 250, 282, 336
BspANI GGCC 2 cut(s) 301, 591
BspCNI CTCAG 1 cut(s) 335
BspLI GGNNCC 2 cut(s) 338, 629
BspMI ACCTGC 1 cut(s) 115
BspPI GGATC 4 cut(s) 57, 245, 331, 344
BsrFI RCCGGY 1 cut(s) 463
BsrI ACTGG 1 cut(s) 541
BssAI RCCGGY 1 cut(s) 463
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 5 cut(s) 15, 49, 250, 282, 336
Bst2UI CCWGG 1 cut(s) 593
Bst4CI ACNGT 3 cut(s) 68, 211, 643
BstC8I GCNNGC 2 cut(s) 330, 423
BstDEI CTNAG 1 cut(s) 322
BstDSI CCRYGG 1 cut(s) 271
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 5 cut(s) 18, 52, 253, 285, 339
BstMBI GATC 5 cut(s) 15, 49, 250, 282, 336
BstNI CCWGG 1 cut(s) 593
BstNSI RCATGY 2 cut(s) 463, 512
BstSCI CCNGG 2 cut(s) 332, 591
BstSFI CTRYAG 1 cut(s) 381
BstX2I RGATCY 2 cut(s) 49, 336
BstYI RGATCY 2 cut(s) 49, 336
BsuRI GGCC 2 cut(s) 301, 591
BtgI CCRYGG 1 cut(s) 271
BtsCI GGATG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 431
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 2 cut(s) 330, 423
CaiI CAGNNNCTG 1 cut(s) 329
Cfr10I RCCGGY 1 cut(s) 463
CseI GACGC 1 cut(s) 286
CviAII CATG 3 cut(s) 184, 460, 509
CviJI RGCY 8 cut(s) 193, 225, 270, 301, 328, 443, 591, 630
CviKI_1 RGCY 8 cut(s) 193, 225, 270, 301, 328, 443, 591, 630
DdeI CTNAG 1 cut(s) 322
DpnI GATC 5 cut(s) 17, 51, 252, 284, 338
DpnII GATC 5 cut(s) 15, 49, 250, 282, 336
Eco147I AGGCCT 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 591
EcoT38I GRGCYC 1 cut(s) 632
FaeI CATG 3 cut(s) 187, 463, 512
FaqI GGGAC 2 cut(s) 289, 508
FatI CATG 3 cut(s) 183, 459, 508
FokI GGATG 1 cut(s) 217
FriOI GRGCYC 1 cut(s) 632
FspBI CTAG 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 614
HaeIII GGCC 2 cut(s) 301, 591
HapII CCGG 2 cut(s) 334, 464
HgaI GACGC 1 cut(s) 286
Hin1II CATG 3 cut(s) 187, 463, 512
HinfI GANTC 3 cut(s) 10, 449, 496
HpaII CCGG 2 cut(s) 334, 464
HphI GGTGA 3 cut(s) 387, 478, 637
Hpy166II GTNNAC 2 cut(s) 395, 546
Hpy188I TCNGA 2 cut(s) 15, 325
Hpy188III TCNNGA 6 cut(s) 202, 214, 254, 340, 493, 615
Hpy8I GTNNAC 2 cut(s) 395, 546
HpyAV CCTTC 1 cut(s) 362
HpyCH4III ACNGT 3 cut(s) 68, 211, 643
HpyCH4V TGCA 5 cut(s) 59, 130, 431, 530, 556
HpyF3I CTNAG 1 cut(s) 322
Hsp92II CATG 3 cut(s) 187, 463, 512
Kzo9I GATC 5 cut(s) 15, 49, 250, 282, 336
LmnI GCTCC 1 cut(s) 627
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 3 cut(s) 511, 619, 643
MalI GATC 5 cut(s) 17, 51, 252, 284, 338
MboI GATC 5 cut(s) 15, 49, 250, 282, 336
MfeI CAATTG 1 cut(s) 531
MflI RGATCY 2 cut(s) 49, 336
MhlI GDGCHC 1 cut(s) 632
MluCI AATT 2 cut(s) 80, 531
MlyI GAGTC 1 cut(s) 490
MnlI CCTC 3 cut(s) 380, 589, 642
MseI TTAA 2 cut(s) 296, 359
MslI CAYNNNNRTG 2 cut(s) 464, 551
MspI CCGG 2 cut(s) 334, 464
MspR9I CCNGG 2 cut(s) 334, 593
MunI CAATTG 1 cut(s) 531
MvaI CCWGG 1 cut(s) 593
NciI CCSGG 1 cut(s) 334
NdeII GATC 5 cut(s) 15, 49, 250, 282, 336
NlaIII CATG 3 cut(s) 187, 463, 512
NlaIV GGNNCC 2 cut(s) 338, 629
NmuCI GTSAC 1 cut(s) 643
NspI RCATGY 2 cut(s) 463, 512
OliI CACNNNNGTG 1 cut(s) 551
PaqCI CACCTGC 1 cut(s) 115
PceI AGGCCT 1 cut(s) 301
PciI ACATGT 1 cut(s) 508
PfeI GAWTC 2 cut(s) 10, 449
PflMI CCANNNNNTGG 2 cut(s) 346, 587
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
PscI ACATGT 1 cut(s) 508
Psp6I CCWGG 1 cut(s) 591
PspGI CCWGG 1 cut(s) 591
PspN4I GGNNCC 2 cut(s) 338, 629
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 2 cut(s) 49, 336
RseI CAYNNNNRTG 2 cut(s) 464, 551
SaqAI TTAA 2 cut(s) 296, 359
Sau3AI GATC 5 cut(s) 15, 49, 250, 282, 336
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 2 cut(s) 334, 593
SduI GDGCHC 1 cut(s) 632
SetI ASST 8 cut(s) 129, 195, 227, 391, 565, 576, 600, 605
SfcI CTRYAG 1 cut(s) 381
SmiMI CAYNNNNRTG 2 cut(s) 464, 551
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 2 cut(s) 80, 531
SseBI AGGCCT 1 cut(s) 301
SspI AATATT 1 cut(s) 662
SspMI CTAG 1 cut(s) 197
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 2 cut(s) 332, 591
TaaI ACNGT 3 cut(s) 68, 211, 643
TasI AATT 2 cut(s) 80, 531
TfiI GAWTC 2 cut(s) 10, 449
Tru1I TTAA 2 cut(s) 296, 359
Tru9I TTAA 2 cut(s) 296, 359
TscAI CASTG 1 cut(s) 438
TseFI GTSAC 1 cut(s) 643
Tsp45I GTSAC 1 cut(s) 643
TspRI CASTG 1 cut(s) 438
Van91I CCANNNNNTGG 2 cut(s) 346, 587
XceI RCATGY 2 cut(s) 463, 512
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.