Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001272

Physical Location & Seq

Genomic Coordinates Reverse (-)

47624516 .. 47627242

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG306400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCAATTGTTGGAAAGTTTGCAGGGGTTGATGTTAAACAAGGAAGGGTATGCTTCTATAGGAGGTGGTTCACCCTTGCGTAAGATGACAGATGAGCAGGCAAATGCACTGAAAATGGCTTTGGAATCAAAGGACATGCCGGTGAATGTCTATGTGGGAATGCGGTACTGGTTCCCGTTCACTGAGGAAATTAAGAGGGACAGAATAACCAAGCTGAGCATAGAAAAGTTGCTAGAGATAACAGATGCAGCCATGGAGAGGAACATGAAGAGATTTATGTTTTCTGATAGCGAGAAGATGTTATCATCTGAAGACAAGGAGATGCAAACCATTCATAAAACATGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Ferrochelatase

Protein Analysis

116

Amino Acids

13.44

Weight (kDa)

5.88

Isoelectric Point (pI)

69.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferrochelatase	PF00762	14 - 66	1.7e-13	Ferrochelatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04030 AT2G04030
fragaria_vesca	FvH4_4g29020 FvH4_4g29020
malus_domestica	MD13G1055300.v1.1 MD16G1054100.v1.1
prunus_persica	Prupe.1G295600_v2.0.a1
pyrus_communis	pycom16g04710
rosa_chinensis	RchiOBHm_Chr2g0102611 RchiOBHm_Chr2g0102621 RchiOBHm_Chr4g0437121 RchiOBHm_Chr6g0247561
rosa_laevigata	RLG00000031307 RLG00000031514 RLG00000035259
rosa_multiflora	Rmu_sc0000081.1_g000011 Rmu_sc0000082.1_g000018 Rmu_sc0004671.1_g000001 Rmu_sc0015724.1_g000001 Rmu_ssc0000006.1_g000007 Rmu_ssc0000451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110100 Rroxscaffold_2G00153330 Rroxscaffold_5G00378190 Rroxscaffold_6G00388360
rosa_rugosa	Rorug02G0184900 Rorug04G0298200 Rorug05G0411600 Rorug05G0445800.1 Rorug07G0145900.1
rosa_samantha	Rh1AG407900 Rh1AG446200 Rh1CG270300 Rh2AG219900 Rh2AG346800 Rh2CG162200 Rh2CG583400 Rh2DG226200 Rh3CG308200 Rh3DG115400 Rh4AG029500 Rh4AG299500 Rh4AG353000 Rh4BG306400 Rh4BG362500 Rh4CG376700 Rh4DG356500 Rh5AG186500 Rh5BG542300 Rh5DG106600 Rh5DG106700 Rh6CG106400
rosa_wichuraiana	Rw2G017120 Rw3G013500 Rw4G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	258
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	63, 154
BbsI	GAAGAC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	1 cut(s)	249
BlpI	GCTNAGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	173
BmsI	GCATC	2 cut(s)	235, 312
BpiI	GAAGAC	1 cut(s)	318
Bpu1102I	GCTNAGC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	174, 206
BseNI	ACTGG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	165
Bsp1720I	GCTNAGC	1 cut(s)	215
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	1 cut(s)	163
BspCNI	CTCAG	2 cut(s)	175, 207
BspLI	GGNNCC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	183, 215
BstDSI	CCRYGG	1 cut(s)	252
BstNSI	RCATGY	3 cut(s)	139, 345, 349
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	260
BstV2I	GAAGAC	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	107, 180
Cac8I	GCNNGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	5 cut(s)	136, 253, 265, 342, 346
CviJI	RGCY	3 cut(s)	119, 214, 251
CviKI_1	RGCY	3 cut(s)	119, 214, 251
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	2 cut(s)	183, 215
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	5 cut(s)	139, 256, 268, 345, 349
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	5 cut(s)	135, 252, 264, 341, 345
Fnu4HI	GCNGC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	1 cut(s)	249
HapII	CCGG	1 cut(s)	140
Hin1II	CATG	5 cut(s)	139, 256, 268, 345, 349
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	2 cut(s)	63, 154
Hpy166II	GTNNAC	2 cut(s)	71, 180
Hpy188I	TCNGA	2 cut(s)	286, 310
Hpy8I	GTNNAC	2 cut(s)	71, 180
HpyAV	CCTTC	1 cut(s)	38
HpyCH4V	TGCA	6 cut(s)	4, 22, 107, 248, 325, 345
HpyF3I	CTNAG	2 cut(s)	183, 215
Hsp92II	CATG	5 cut(s)	139, 256, 268, 345, 349
LpnPI	CCDG	4 cut(s)	8, 83, 153, 154
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	2 cut(s)	235, 312
MaeI	CTAG	1 cut(s)	233
MboII	GAAGA	3 cut(s)	280, 307, 323
MfeI	CAATTG	1 cut(s)	5
MluCI	AATT	2 cut(s)	5, 189
MnlI	CCTC	4 cut(s)	56, 178, 189, 252
Mph1103I	ATGCAT	1 cut(s)	347
MseI	TTAA	2 cut(s)	35, 192
MslI	CAYNNNNRTG	2 cut(s)	140, 346
MspI	CCGG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	165
NcoI	CCATGG	1 cut(s)	252
NlaIII	CATG	5 cut(s)	139, 256, 268, 345, 349
NlaIV	GGNNCC	1 cut(s)	173
NsiI	ATGCAT	1 cut(s)	347
NspI	RCATGY	3 cut(s)	139, 345, 349
PctI	GAATGC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	2 cut(s)	140, 346
SaqAI	TTAA	2 cut(s)	35, 192
SatI	GCNGC	1 cut(s)	249
SetI	ASST	2 cut(s)	67, 216
SfaNI	GCATC	2 cut(s)	235, 312
SfcI	CTRYAG	1 cut(s)	57
SmiMI	CAYNNNNRTG	2 cut(s)	140, 346
Sse9I	AATT	2 cut(s)	5, 189
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	252
TasI	AATT	2 cut(s)	5, 189
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	35, 192
Tru9I	TTAA	2 cut(s)	35, 192
TscAI	CASTG	2 cut(s)	114, 187
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	281, 323
TspRI	CASTG	2 cut(s)	114, 187
XceI	RCATGY	3 cut(s)	139, 345, 349
XspI	CTAG	1 cut(s)	233
Zsp2I	ATGCAT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.