RchiOBHm_Chr6g0247561

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001272
Physical Location & Seq
Forward (+)
3510818 .. 3513322
2505 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22190

Sequence Viewer

Length: 561 bp
ATGACGAAGGAGGAACTCATTGACTGCCTTGGTACCATTGGTCAGAGTGGTACTTCAAAATTCTTGACGGCTCTGAAGGATCTTGGTGCAGACAACGGTTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCTTTTCTTGTTGCTGACAAGCAGGTGCAGGTAGAAACTGATCCAGAAAATATCATTAGCCGTGGGACGCAGATCAAACTATATTTAAGGCCTGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGGGGTTGATGTTAAACAGGGAAGGGTATGCTTCTATAGGAGGTGGTTCACCCTTGTGTAAGATGACAGATGAGCAGGCAAATGCACTGAAAATGGCTTTGGAATCAAAGGACATGCCGGTGAATGTCTATGTGGGAATGCGGTACTGGTTCCCGTTCACTGAGGAAGCAGTTCATCAACTTCGGGACTCAACAAATACATGTAACCCTTTATATGACTGCAATTGCTTCCCAGTCCACTTTGGTGCAAAAACCTATTGTCAAGGTCTTACCAGAAAATGGCCTGGAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

186

Amino Acids

20.61

Weight (kDa)

5.22

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferrochelatase PF00762 96 - 153 7.5e-15 Ferrochelatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 145
Acc36I ACCTGC 2 cut(s) 145, 151
Acc65I GGTACC 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 32
AccB7I CCANNNNNTGG 2 cut(s) 268, 546
AciI CCGC 1 cut(s) 409
AclWI GGATC 4 cut(s) 87, 167, 253, 266
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 3 cut(s) 34, 52, 413
AfiI CCNNNNNNNGG 2 cut(s) 268, 546
AflIII ACRYGT 1 cut(s) 467
AgsI TTSAA 1 cut(s) 57
AjnI CCWGG 1 cut(s) 550
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AleI CACNNNNGTG 2 cut(s) 322, 510
AlwI GGATC 4 cut(s) 87, 167, 253, 266
AlwNI CAGNNNCTG 1 cut(s) 251
AoxI GGCC 2 cut(s) 221, 548
ApoI RAATTY 1 cut(s) 59
Asp700I GAANNNNTTC 1 cut(s) 438
Asp718I GGTACC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 2 cut(s) 309, 400
BamHI GGATCC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 32
BceAI ACGGC 2 cut(s) 84, 177
BciT130I CCWGG 1 cut(s) 552
BcnI CCSGG 1 cut(s) 256
BfmI CTRYAG 1 cut(s) 303
BfuAI ACCTGC 2 cut(s) 145, 151
Bme1390I CCNGG 2 cut(s) 256, 552
BmiI GGNNCC 3 cut(s) 34, 260, 419
BmrFI CCNGG 2 cut(s) 256, 552
BmrI ACTGGG 1 cut(s) 494
BmuI ACTGGG 1 cut(s) 494
BpuMI CCSGG 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 28, 193
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 546
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 2 cut(s) 419, 500
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 2 cut(s) 28, 193
BseLI CCNNNNNNNGG 2 cut(s) 268, 546
BseMII CTCAG 2 cut(s) 258, 420
BseNI ACTGG 2 cut(s) 419, 500
BsgI GTGCAG 2 cut(s) 108, 179
BshFI GGCC 2 cut(s) 223, 550
BshNI GGYRCC 1 cut(s) 32
BsiSI CCGG 2 cut(s) 256, 386
BslFI GGGAC 2 cut(s) 211, 467
BslI CCNNNNNNNGG 2 cut(s) 268, 546
BsmFI GGGAC 2 cut(s) 211, 467
BsmI GAATGC 1 cut(s) 411
BsnI GGCC 2 cut(s) 223, 550
Bsp143I GATC 4 cut(s) 79, 172, 204, 258
BspACI CCGC 1 cut(s) 409
BspANI GGCC 2 cut(s) 223, 550
BspCNI CTCAG 2 cut(s) 257, 421
BspLI GGNNCC 3 cut(s) 34, 260, 419
BspMI ACCTGC 2 cut(s) 145, 151
BspPI GGATC 4 cut(s) 87, 167, 253, 266
BspT107I GGYRCC 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 385
BsrI ACTGG 2 cut(s) 419, 500
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 2 cut(s) 28, 193
BssMI GATC 4 cut(s) 79, 172, 204, 258
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 252, 345
BstDEI CTNAG 2 cut(s) 244, 429
BstDSI CCRYGG 1 cut(s) 193
BstKTI GATC 4 cut(s) 82, 175, 207, 261
BstMBI GATC 4 cut(s) 79, 172, 204, 258
BstNI CCWGG 1 cut(s) 552
BstNSI RCATGY 2 cut(s) 385, 471
BstSCI CCNGG 2 cut(s) 254, 550
BstSFI CTRYAG 1 cut(s) 303
BstX2I RGATCY 2 cut(s) 79, 258
BstYI RGATCY 2 cut(s) 79, 258
BsuRI GGCC 2 cut(s) 223, 550
BtgI CCRYGG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 353, 426
BveI ACCTGC 2 cut(s) 145, 151
Cac8I GCNNGC 2 cut(s) 252, 345
CaiI CAGNNNCTG 1 cut(s) 251
Cfr10I RCCGGY 1 cut(s) 385
CseI GACGC 1 cut(s) 208
Csp6I GTAC 3 cut(s) 33, 51, 412
CviAII CATG 2 cut(s) 382, 468
CviJI RGCY 6 cut(s) 71, 192, 223, 250, 365, 550
CviKI_1 RGCY 6 cut(s) 71, 192, 223, 250, 365, 550
CviQI GTAC 3 cut(s) 33, 51, 412
DdeI CTNAG 2 cut(s) 244, 429
DpnI GATC 4 cut(s) 81, 174, 206, 260
DpnII GATC 4 cut(s) 79, 172, 204, 258
Eco130I CCWWGG 1 cut(s) 28
Eco147I AGGCCT 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 2 cut(s) 385, 471
FaiI YATR 9 cut(s) 214, 237, 297, 305, 383, 399, 469, 481, 483
FaqI GGGAC 2 cut(s) 211, 467
FatI CATG 2 cut(s) 381, 467
HaeIII GGCC 2 cut(s) 223, 550
HapII CCGG 2 cut(s) 256, 386
HgaI GACGC 1 cut(s) 208
Hin1II CATG 2 cut(s) 385, 471
HinfI GANTC 2 cut(s) 371, 455
HpaII CCGG 2 cut(s) 256, 386
HphI GGTGA 2 cut(s) 309, 400
Hpy166II GTNNAC 3 cut(s) 317, 426, 505
Hpy188I TCNGA 3 cut(s) 45, 75, 247
Hpy188III TCNNGA 4 cut(s) 64, 176, 262, 452
Hpy8I GTNNAC 3 cut(s) 317, 426, 505
HpyAV CCTTC 2 cut(s) 70, 284
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 5 cut(s) 89, 160, 353, 489, 515
HpyF3I CTNAG 2 cut(s) 244, 429
Hsp92II CATG 2 cut(s) 385, 471
KpnI GGTACC 1 cut(s) 36
Kzo9I GATC 4 cut(s) 79, 172, 204, 258
MaeIII GTNAC 1 cut(s) 470
MalI GATC 4 cut(s) 81, 174, 206, 260
MboI GATC 4 cut(s) 79, 172, 204, 258
MfeI CAATTG 1 cut(s) 490
MflI RGATCY 2 cut(s) 79, 258
MluCI AATT 3 cut(s) 59, 110, 490
MlyI GAGTC 1 cut(s) 449
MnlI CCTC 4 cut(s) 4, 302, 424, 548
MroXI GAANNNNTTC 1 cut(s) 438
MseI TTAA 2 cut(s) 218, 281
MslI CAYNNNNRTG 3 cut(s) 322, 386, 510
MspI CCGG 2 cut(s) 256, 386
MspR9I CCNGG 2 cut(s) 256, 552
MunI CAATTG 1 cut(s) 490
Mva1269I GAATGC 1 cut(s) 411
MvaI CCWGG 1 cut(s) 552
NciI CCSGG 1 cut(s) 256
NdeII GATC 4 cut(s) 79, 172, 204, 258
NlaIII CATG 2 cut(s) 385, 471
NlaIV GGNNCC 3 cut(s) 34, 260, 419
NspI RCATGY 2 cut(s) 385, 471
OliI CACNNNNGTG 2 cut(s) 322, 510
PaqCI CACCTGC 1 cut(s) 145
PceI AGGCCT 1 cut(s) 223
PciI ACATGT 1 cut(s) 467
PctI GAATGC 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 371
PflMI CCANNNNNTGG 2 cut(s) 268, 546
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
PscI ACATGT 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 3 cut(s) 34, 260, 419
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 2 cut(s) 79, 258
RsaI GTAC 3 cut(s) 34, 52, 413
RsaNI GTAC 3 cut(s) 33, 51, 412
RseI CAYNNNNRTG 3 cut(s) 322, 386, 510
SaqAI TTAA 2 cut(s) 218, 281
Sau3AI GATC 4 cut(s) 79, 172, 204, 258
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 2 cut(s) 256, 552
SetI ASST 6 cut(s) 159, 165, 313, 524, 535, 559
SfcI CTRYAG 1 cut(s) 303
SmiMI CAYNNNNRTG 3 cut(s) 322, 386, 510
Sse9I AATT 3 cut(s) 59, 110, 490
SseBI AGGCCT 1 cut(s) 223
SsiI CCGC 1 cut(s) 409
StuI AGGCCT 1 cut(s) 223
StyD4I CCNGG 2 cut(s) 254, 550
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 98
TasI AATT 3 cut(s) 59, 110, 490
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 2 cut(s) 218, 281
Tru9I TTAA 2 cut(s) 218, 281
TscAI CASTG 2 cut(s) 360, 433
TspDTI ATGAA 1 cut(s) 431
TspRI CASTG 2 cut(s) 360, 433
Van91I CCANNNNNTGG 2 cut(s) 268, 546
XapI RAATTY 1 cut(s) 59
XceI RCATGY 2 cut(s) 385, 471
XmnI GAANNNNTTC 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.