Rmu_sc0000081.1_g000011

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000081.1
OG0001272
Physical Location & Seq
Reverse (-)
33934 .. 37625
3692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000081.1_g000011.1.cds

Sequence Viewer

Length: 819 bp
atgctctcacactctcatgaacctcaatccctcaatccaccctcaatccctttcaccctctccagttcacacacactcccatcctcctgcgattccggcaaagcaagtttggatagaagcttgaggactgaaccccaactccaaaatcaagaccatagaagcttcgactttcagacgattatgagtgctaggcttcctataatcaagcttgtagactgtggaaccggaattgagtgtgatttatcaattgagaacagggatggcattgtaaaatcccagattgtctacataatatctagaattgacggaagggatactggtattgggatgaagaaggaggaactcattgactgccttggtaccattgctcagagtggtacttcaaaattcttgacggctctgaaggatcttggtgcagacaacggtttgattggtcaatttggtgttgggttctattctgcttttcttgttgctgacaagcaggtgcagttttggtttcacactttttttagtcttatgccttgtaaaaactatctgctcatggttgagcttctagtctggatgactgtcttgagcagtagctcttatgtgattagggtagaaactgatccagaaaatatcattagccgtgggacgcagatcaaactatatttaaggcctgatgacaagtatgagttctcagagcctgcccggatccagagtttggtaaagaattacttgcaaattttggtgcaattgcttacactttggtgcaataacctattgtcaaggtcttaccagaaaatggcctggaggttaggttatcagggtcaggagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

272

Amino Acids

30.73

Weight (kDa)

6.22

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 472
Acc36I ACCTGC 1 cut(s) 472
Acc65I GGTACC 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 359
AccB7I CCANNNNNTGG 2 cut(s) 703, 784
AccI GTMKAC 2 cut(s) 213, 285
AclWI GGATC 4 cut(s) 414, 602, 688, 701
AcsI RAATTY 2 cut(s) 386, 723
AcuI CTGAAG 1 cut(s) 422
AfaI GTAC 2 cut(s) 361, 379
AfiI CCNNNNNNNGG 2 cut(s) 703, 784
AgsI TTSAA 1 cut(s) 384
AjnI CCWGG 1 cut(s) 788
AleI CACNNNNGTG 1 cut(s) 748
AloI GAACNNNNNNTCC 2 cut(s) 123, 155
AluBI AGCT 5 cut(s) 120, 162, 208, 550, 582
AluI AGCT 5 cut(s) 120, 162, 208, 550, 582
AlwI GGATC 4 cut(s) 414, 602, 688, 701
AlwNI CAGNNNCTG 1 cut(s) 686
AoxI GGCC 2 cut(s) 656, 786
ApoI RAATTY 2 cut(s) 386, 723
Asp718I GGTACC 1 cut(s) 359
AsuC2I CCSGG 1 cut(s) 691
AsuHPI GGTGA 1 cut(s) 46
BamHI GGATCC 1 cut(s) 693
BanI GGYRCC 1 cut(s) 359
BccI CCATC 2 cut(s) 88, 254
BceAI ACGGC 2 cut(s) 411, 612
BciT130I CCWGG 1 cut(s) 790
BciVI GTATCC 1 cut(s) 307
BcnI CCSGG 1 cut(s) 691
BfaI CTAG 3 cut(s) 189, 297, 554
BfuAI ACCTGC 1 cut(s) 472
BfuI GTATCC 1 cut(s) 307
Bme1390I CCNGG 2 cut(s) 691, 790
BmiI GGNNCC 3 cut(s) 223, 361, 695
BmrFI CCNGG 2 cut(s) 691, 790
BpmI CTGGAG 2 cut(s) 46, 811
BpuEI CTTGAG 2 cut(s) 142, 592
BpuMI CCSGG 1 cut(s) 691
BsaJI CCNNGG 2 cut(s) 355, 628
BsaWI WCCGGW 1 cut(s) 224
BsaXI ACNNNNNCTCC 6 cut(s) 60, 90, 123, 153, 784, 814
Bsc4I CCNNNNNNNGG 2 cut(s) 703, 784
Bse1I ACTGG 2 cut(s) 63, 322
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 1 cut(s) 790
BseDI CCNNGG 2 cut(s) 355, 628
BseGI GGATG 4 cut(s) 80, 265, 333, 567
BseLI CCNNNNNNNGG 2 cut(s) 703, 784
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 2 cut(s) 383, 693
BseNI ACTGG 2 cut(s) 63, 322
BsgI GTGCAG 2 cut(s) 435, 506
BshFI GGCC 2 cut(s) 658, 788
BshNI GGYRCC 1 cut(s) 359
BsiSI CCGG 3 cut(s) 96, 225, 691
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 2 cut(s) 703, 784
BsmFI GGGAC 1 cut(s) 646
BsnI GGCC 2 cut(s) 658, 788
Bsp143I GATC 4 cut(s) 406, 607, 639, 693
BspANI GGCC 2 cut(s) 658, 788
BspCNI CTCAG 2 cut(s) 382, 692
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 3 cut(s) 223, 361, 695
BspMI ACCTGC 1 cut(s) 472
BspPI GGATC 4 cut(s) 414, 602, 688, 701
BspT107I GGYRCC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 2 cut(s) 63, 322
BssECI CCNNGG 2 cut(s) 355, 628
BssMI GATC 4 cut(s) 406, 607, 639, 693
BssT1I CCWWGG 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 790
Bst4CI ACNGT 3 cut(s) 218, 425, 568
BstC8I GCNNGC 1 cut(s) 687
BstDEI CTNAG 2 cut(s) 369, 679
BstDSI CCRYGG 1 cut(s) 628
BstF5I GGATG 4 cut(s) 80, 265, 333, 567
BstKTI GATC 4 cut(s) 409, 610, 642, 696
BstMBI GATC 4 cut(s) 406, 607, 639, 693
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 790
BstSCI CCNGG 2 cut(s) 689, 788
BstX2I RGATCY 2 cut(s) 406, 693
BstYI RGATCY 2 cut(s) 406, 693
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 2 cut(s) 658, 788
BtgI CCRYGG 1 cut(s) 628
BtsCI GGATG 4 cut(s) 80, 265, 333, 567
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 687
CaiI CAGNNNCTG 1 cut(s) 686
CciI TCATGA 1 cut(s) 16
CseI GACGC 1 cut(s) 643
Csp6I GTAC 2 cut(s) 360, 378
CviAII CATG 2 cut(s) 17, 541
CviQI GTAC 2 cut(s) 360, 378
DdeI CTNAG 2 cut(s) 369, 679
DpnI GATC 4 cut(s) 408, 609, 641, 695
DpnII GATC 4 cut(s) 406, 607, 639, 693
Eco130I CCWWGG 1 cut(s) 355
Eco147I AGGCCT 1 cut(s) 658
Eco57I CTGAAG 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 788
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 2 cut(s) 20, 544
FalI AAGNNNNNCTT 2 cut(s) 701, 733
FaqI GGGAC 1 cut(s) 646
FatI CATG 2 cut(s) 16, 540
FblI GTMKAC 2 cut(s) 213, 285
FokI GGATG 4 cut(s) 67, 272, 340, 574
FspBI CTAG 3 cut(s) 189, 297, 554
GsuI CTGGAG 2 cut(s) 46, 811
HaeIII GGCC 2 cut(s) 658, 788
HapII CCGG 3 cut(s) 96, 225, 691
HgaI GACGC 1 cut(s) 643
Hin1II CATG 2 cut(s) 20, 544
HindIII AAGCTT 3 cut(s) 118, 160, 206
HinfI GANTC 1 cut(s) 92
HpaII CCGG 3 cut(s) 96, 225, 691
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 3 cut(s) 68, 214, 286
Hpy188I TCNGA 4 cut(s) 174, 372, 402, 682
Hpy188III TCNNGA 9 cut(s) 17, 149, 297, 391, 559, 571, 611, 697, 812
Hpy8I GTNNAC 3 cut(s) 68, 214, 286
HpyAV CCTTC 3 cut(s) 303, 328, 397
HpyCH4III ACNGT 3 cut(s) 218, 425, 568
HpyCH4V TGCA 5 cut(s) 416, 487, 721, 733, 753
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 2 cut(s) 369, 679
Hsp92II CATG 2 cut(s) 20, 544
KpnI GGTACC 1 cut(s) 363
Kzo9I GATC 4 cut(s) 406, 607, 639, 693
MaeI CTAG 3 cut(s) 189, 297, 554
MalI GATC 4 cut(s) 408, 609, 641, 695
MboI GATC 4 cut(s) 406, 607, 639, 693
MboII GAAGA 1 cut(s) 343
MfeI CAATTG 2 cut(s) 246, 734
MflI RGATCY 2 cut(s) 406, 693
MluCI AATT 8 cut(s) 228, 246, 300, 386, 437, 712, 723, 734
MnlI CCTC 8 cut(s) 33, 41, 52, 68, 94, 117, 331, 786
MseI TTAA 1 cut(s) 653
MslI CAYNNNNRTG 2 cut(s) 15, 748
MspI CCGG 3 cut(s) 96, 225, 691
MspR9I CCNGG 2 cut(s) 691, 790
MunI CAATTG 2 cut(s) 246, 734
MvaI CCWGG 1 cut(s) 790
MwoI GCNNNNNNNGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 691
NdeII GATC 4 cut(s) 406, 607, 639, 693
NlaIII CATG 2 cut(s) 20, 544
NlaIV GGNNCC 3 cut(s) 223, 361, 695
OliI CACNNNNGTG 1 cut(s) 748
PagI TCATGA 1 cut(s) 16
PaqCI CACCTGC 1 cut(s) 472
PceI AGGCCT 1 cut(s) 658
PfeI GAWTC 1 cut(s) 92
PflMI CCANNNNNTGG 2 cut(s) 703, 784
Psp6I CCWGG 1 cut(s) 788
PspGI CCWGG 1 cut(s) 788
PspN4I GGNNCC 3 cut(s) 223, 361, 695
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 2 cut(s) 406, 693
RsaI GTAC 2 cut(s) 361, 379
RsaNI GTAC 2 cut(s) 360, 378
RseI CAYNNNNRTG 2 cut(s) 15, 748
SaqAI TTAA 1 cut(s) 653
Sau3AI GATC 4 cut(s) 406, 607, 639, 693
ScrFI CCNGG 2 cut(s) 691, 790
SmiMI CAYNNNNRTG 2 cut(s) 15, 748
SmlI CTYRAG 2 cut(s) 121, 571
SmoI CTYRAG 2 cut(s) 121, 571
Sse9I AATT 8 cut(s) 228, 246, 300, 386, 437, 712, 723, 734
SseBI AGGCCT 1 cut(s) 658
SspMI CTAG 3 cut(s) 189, 297, 554
StuI AGGCCT 1 cut(s) 658
StyD4I CCNGG 2 cut(s) 689, 788
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 3 cut(s) 218, 425, 568
TaqI TCGA 1 cut(s) 165
TasI AATT 8 cut(s) 228, 246, 300, 386, 437, 712, 723, 734
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 653
Tru9I TTAA 1 cut(s) 653
TspDTI ATGAA 2 cut(s) 33, 344
TspGWI ACGGA 1 cut(s) 321
Van91I CCANNNNNTGG 2 cut(s) 703, 784
XapI RAATTY 2 cut(s) 386, 723
XbaI TCTAGA 1 cut(s) 296
XmiI GTMKAC 2 cut(s) 213, 285
XspI CTAG 3 cut(s) 189, 297, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.