Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000082.1

Orthogroup ID

OG0001272

Physical Location & Seq

Genomic Coordinates Forward (+)

61335 .. 62967

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000082.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgacgaaggaggaactcattgactgccttggtaccattgctcagacggctctgaaggatcttggtgcagacaacggtttgattggtcaatttggtgttgggttctattctgcttttcttgttgctgacaagcaggggttgatgttaaacaaggaagggtatgcttctataggaggtggttcacccttgtgtaagatgacagatgagcaggcaaatgcactgaaaatggctttggaatcaaaggacatgccggtgaatgtctatgtgggaatgcggtactggttcccgttcactgaggaagcagttcatcaacttcgggactcaacaaatacatgtaaccctttatatgactgcaattgcttcccagtccactttggtgcaaaaacctattgtcaaggtcttaccagaaaatggcctggaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Ferrochelatase

Protein Analysis

141

Amino Acids

15.45

Weight (kDa)

5.28

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04030 AT2G04030
fragaria_vesca	FvH4_4g29020 FvH4_4g29020
malus_domestica	MD13G1055300.v1.1 MD16G1054100.v1.1
prunus_persica	Prupe.1G295600_v2.0.a1
pyrus_communis	pycom16g04710
rosa_chinensis	RchiOBHm_Chr2g0102611 RchiOBHm_Chr2g0102621 RchiOBHm_Chr4g0437121 RchiOBHm_Chr6g0247561
rosa_laevigata	RLG00000031307 RLG00000031514 RLG00000035259
rosa_multiflora	Rmu_sc0000081.1_g000011 Rmu_sc0000082.1_g000018 Rmu_sc0004671.1_g000001 Rmu_sc0015724.1_g000001 Rmu_ssc0000006.1_g000007 Rmu_ssc0000451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110100 Rroxscaffold_2G00153330 Rroxscaffold_5G00378190 Rroxscaffold_6G00388360
rosa_rugosa	Rorug02G0184900 Rorug04G0298200 Rorug05G0411600 Rorug05G0445800.1 Rorug07G0145900.1
rosa_samantha	Rh1AG407900 Rh1AG446200 Rh1CG270300 Rh2AG219900 Rh2AG346800 Rh2CG162200 Rh2CG583400 Rh2DG226200 Rh3CG308200 Rh3DG115400 Rh4AG029500 Rh4AG299500 Rh4AG353000 Rh4BG306400 Rh4BG362500 Rh4CG376700 Rh4DG356500 Rh5AG186500 Rh5BG542300 Rh5DG106600 Rh5DG106700 Rh6CG106400
rosa_wichuraiana	Rw2G017120 Rw3G013500 Rw4G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	411
AciI	CCGC	1 cut(s)	274
AclWI	GGATC	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	2 cut(s)	34, 278
AfiI	CCNNNNNNNGG	1 cut(s)	411
AflIII	ACRYGT	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	415
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AleI	CACNNNNGTG	2 cut(s)	187, 375
AlwI	GGATC	1 cut(s)	66
AoxI	GGCC	1 cut(s)	413
Asp700I	GAANNNNTTC	1 cut(s)	303
Asp718I	GGTACC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	174, 265
BanI	GGYRCC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	417
BfmI	CTRYAG	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	417
BmiI	GGNNCC	2 cut(s)	34, 284
BmrFI	CCNGG	1 cut(s)	417
BmrI	ACTGGG	1 cut(s)	359
BmuI	ACTGGG	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse118I	RCCGGY	1 cut(s)	250
Bse1I	ACTGG	2 cut(s)	284, 365
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	56, 285
BseNI	ACTGG	2 cut(s)	284, 365
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	415
BshNI	GGYRCC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	332
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	415
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	415
BspCNI	CTCAG	2 cut(s)	55, 286
BspLI	GGNNCC	2 cut(s)	34, 284
BspPI	GGATC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	250
BsrI	ACTGG	2 cut(s)	284, 365
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	58
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	42, 294
BstKTI	GATC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	417
BstNSI	RCATGY	2 cut(s)	250, 336
BstSCI	CCNGG	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	415
BtsIMutI	CAGTG	2 cut(s)	218, 291
Cac8I	GCNNGC	1 cut(s)	210
Cfr10I	RCCGGY	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	33, 277
CviAII	CATG	2 cut(s)	247, 333
CviJI	RGCY	3 cut(s)	50, 230, 415
CviKI_1	RGCY	3 cut(s)	50, 230, 415
CviQI	GTAC	2 cut(s)	33, 277
DdeI	CTNAG	2 cut(s)	42, 294
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	2 cut(s)	250, 336
FaiI	YATR	7 cut(s)	162, 170, 248, 264, 334, 346, 348
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	2 cut(s)	246, 332
HaeIII	GGCC	1 cut(s)	415
HapII	CCGG	1 cut(s)	251
Hin1II	CATG	2 cut(s)	250, 336
HinfI	GANTC	2 cut(s)	236, 320
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	2 cut(s)	174, 265
Hpy166II	GTNNAC	3 cut(s)	182, 291, 370
Hpy188I	TCNGA	2 cut(s)	45, 54
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	3 cut(s)	182, 291, 370
HpyAV	CCTTC	2 cut(s)	49, 149
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	4 cut(s)	68, 218, 354, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	2 cut(s)	42, 294
Hsp92II	CATG	2 cut(s)	250, 336
KpnI	GGTACC	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	58
LpnPI	CCDG	7 cut(s)	119, 194, 264, 265, 378, 402, 418
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MfeI	CAATTG	1 cut(s)	355
MflI	RGATCY	1 cut(s)	58
MluCI	AATT	2 cut(s)	89, 355
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	4 cut(s)	4, 167, 289, 413
MroXI	GAANNNNTTC	1 cut(s)	303
MseI	TTAA	1 cut(s)	146
MslI	CAYNNNNRTG	3 cut(s)	187, 251, 375
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	417
MunI	CAATTG	1 cut(s)	355
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	2 cut(s)	250, 336
NlaIV	GGNNCC	2 cut(s)	34, 284
NspI	RCATGY	2 cut(s)	250, 336
OliI	CACNNNNGTG	2 cut(s)	187, 375
PciI	ACATGT	1 cut(s)	332
PctI	GAATGC	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	236
PflMI	CCANNNNNTGG	1 cut(s)	411
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PscI	ACATGT	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	34, 284
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	2 cut(s)	34, 278
RsaNI	GTAC	2 cut(s)	33, 277
RseI	CAYNNNNRTG	3 cut(s)	187, 251, 375
SaqAI	TTAA	1 cut(s)	146
Sau3AI	GATC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	417
SetI	ASST	4 cut(s)	178, 389, 400, 424
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	3 cut(s)	187, 251, 375
Sse9I	AATT	2 cut(s)	89, 355
SsiI	CCGC	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	415
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	77
TasI	AATT	2 cut(s)	89, 355
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	2 cut(s)	225, 298
TspDTI	ATGAA	1 cut(s)	296
TspRI	CASTG	2 cut(s)	225, 298
Van91I	CCANNNNNTGG	1 cut(s)	411
XceI	RCATGY	2 cut(s)	250, 336
XmnI	GAANNNNTTC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.