Rh2AG346800

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001272
Physical Location & Seq
Reverse (-)
51019333 .. 51021212
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG346800.1

Sequence Viewer

Length: 705 bp
ATGGAGGCTTGGACCCAAAATAGGCAGGTCACTGTTCGCTGCGATGCTGCGGTCGCCGAGAAAGAGGTCGCCGATACGCCCGGTGAGGAATTCCAGTACCAAGCCAAGGTCAGTCAGCTAATGGATTTGATAGTGCACAGTCTATACAGCCACAAGAAGGTATTCCTTAGGGAGCGTGTTAGTAATGCAAGTGATGCTTTGGACAAGTTGAGATTTTTGAGTGTGACTGAGCCCTCGCTGCTTGGAGATGCTGTTGAGCTGCAGATACGCATCAAACCCGACCCAGAGAATGGGACTATCACTATAACACAACGGTTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCTTTCTTGTTGCTGACAAGGTAGTTGTTTCTACAAAAAGCCCAAAATCAGACAAGCAATACGTCTGGGAATCAGCTGCTGAGAGTAGCTCTTATATGATTAGGGTAGAAACTGATCCAAAAAATATCATTAGCCATGGGATGCAGATCAAACTATATTTAAGGCCGGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGGTAAAGAATTACTCACAATTTGTTTCTTTCCCCATCTACACATGGCAAGAAAAATCAAGGACTGTTGAGGTTGAAGAGGAGGAAGAACCAAAGGAAGGAGAAGAACCAAAGCCAGAGGTAATTGACATGCAATCTGAAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

234

Amino Acids

27.09

Weight (kDa)

4.86

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP90 PF00183 177 - 224 1.5e-10 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 16
AccB7I CCANNNNNTGG 2 cut(s) 290, 559
AciI CCGC 1 cut(s) 50
AclWI GGATC 3 cut(s) 458, 544, 557
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 6 cut(s) 21, 106, 157, 290, 559, 656
AgsI TTSAA 1 cut(s) 635
AluBI AGCT 4 cut(s) 118, 259, 425, 438
AluI AGCT 4 cut(s) 118, 259, 425, 438
Alw21I GWGCWC 1 cut(s) 138
Alw44I GTGCAC 1 cut(s) 134
AlwI GGATC 3 cut(s) 458, 544, 557
AlwNI CAGNNNCTG 2 cut(s) 428, 542
AoxI GGCC 1 cut(s) 512
ApaLI GTGCAC 1 cut(s) 134
ApeKI GCWGC 5 cut(s) 39, 47, 238, 259, 425
ApoI RAATTY 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 12
AsuC2I CCSGG 2 cut(s) 81, 547
AsuHPI GGTGA 1 cut(s) 95
AvaII GGWCC 1 cut(s) 12
AxyI CCTNAGG 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 138
BamHI GGATCC 1 cut(s) 549
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 5 cut(s) 26, 34, 225, 246, 412
BccI CCATC 1 cut(s) 602
BcnI CCSGG 2 cut(s) 81, 547
BfmI CTRYAG 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 16
BisI GCNGC 5 cut(s) 40, 48, 239, 260, 426
BlsI GCNGC 5 cut(s) 41, 49, 240, 261, 427
Bme1390I CCNGG 2 cut(s) 81, 547
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 14, 551
BmrFI CCNGG 2 cut(s) 81, 547
BmsI GCATC 5 cut(s) 34, 184, 238, 279, 480
BplI GAGNNNNNCTC 2 cut(s) 422, 454
BpuMI CCSGG 2 cut(s) 81, 547
BsaBI GATNNNNATC 2 cut(s) 269, 494
BsaJI CCNNGG 2 cut(s) 105, 484
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 6 cut(s) 21, 106, 157, 290, 559, 656
Bse1I ACTGG 1 cut(s) 94
Bse21I CCTNAGG 1 cut(s) 167
Bse8I GATNNNNATC 2 cut(s) 269, 494
BseDI CCNNGG 2 cut(s) 105, 484
BseGI GGATG 2 cut(s) 495, 523
BseJI GATNNNNATC 2 cut(s) 269, 494
BseLI CCNNNNNNNGG 6 cut(s) 21, 106, 157, 290, 559, 656
BseMII CTCAG 3 cut(s) 219, 420, 549
BseNI ACTGG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 653
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 5 cut(s) 26, 34, 225, 246, 412
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 514
BsiEI CGRYCG 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 3 cut(s) 81, 515, 547
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 6 cut(s) 21, 106, 157, 290, 559, 656
BsmFI GGGAC 1 cut(s) 307
BsnI GGCC 1 cut(s) 514
Bsp1286I GDGCHC 2 cut(s) 138, 234
Bsp143I GATC 3 cut(s) 463, 495, 549
Bsp19I CCATGG 1 cut(s) 484
BspACI CCGC 1 cut(s) 50
BspANI GGCC 1 cut(s) 514
BspCNI CTCAG 3 cut(s) 220, 421, 548
BspLI GGNNCC 2 cut(s) 14, 551
BspMAI CTGCAG 1 cut(s) 264
BspMI ACCTGC 1 cut(s) 16
BspPI GGATC 3 cut(s) 458, 544, 557
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 105, 484
BssMI GATC 3 cut(s) 463, 495, 549
BssT1I CCWWGG 2 cut(s) 105, 484
Bst4CI ACNGT 4 cut(s) 34, 140, 315, 625
Bst6I CTCTTC 1 cut(s) 630
BstAPI GCANNNNNTGC 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 4 cut(s) 167, 228, 429, 535
BstDSI CCRYGG 1 cut(s) 484
BstF5I GGATG 2 cut(s) 495, 523
BstKTI GATC 3 cut(s) 466, 498, 552
BstMBI GATC 3 cut(s) 463, 495, 549
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 3 cut(s) 53, 194, 238
BstNSI RCATGY 1 cut(s) 691
BstSCI CCNGG 2 cut(s) 79, 545
BstSFI CTRYAG 1 cut(s) 260
BstSLI GKGCMC 1 cut(s) 138
BstV1I GCAGC 5 cut(s) 26, 34, 225, 246, 412
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
Bsu36I CCTNAGG 1 cut(s) 167
BsuRI GGCC 1 cut(s) 514
BtgI CCRYGG 1 cut(s) 484
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 495, 523
BtsIMutI CAGTG 1 cut(s) 30
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 543
CaiI CAGNNNCTG 2 cut(s) 428, 542
Cfr13I GGNCC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 97
CviAII CATG 3 cut(s) 485, 603, 688
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 4 cut(s) 167, 228, 429, 535
DpnI GATC 3 cut(s) 465, 497, 551
DpnII GATC 3 cut(s) 463, 495, 549
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
Eco130I CCWWGG 2 cut(s) 105, 484
Eco24I GRGCYC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 12
Eco81I CCTNAGG 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 89
EcoT14I CCWWGG 2 cut(s) 105, 484
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 2 cut(s) 105, 484
FaeI CATG 3 cut(s) 488, 606, 691
FaiI YATR 9 cut(s) 145, 305, 444, 446, 486, 505, 528, 604, 689
FalI AAGNNNNNCTT 2 cut(s) 181, 213
FaqI GGGAC 1 cut(s) 307
FatI CATG 3 cut(s) 484, 602, 687
Fnu4HI GCNGC 5 cut(s) 40, 48, 239, 260, 426
FokI GGATG 2 cut(s) 502, 530
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 5 cut(s) 40, 48, 239, 260, 426
GluI GCNGC 5 cut(s) 40, 48, 239, 260, 426
HaeIII GGCC 1 cut(s) 514
HapII CCGG 3 cut(s) 81, 515, 547
Hin1II CATG 3 cut(s) 488, 606, 691
HinfI GANTC 1 cut(s) 419
HpaII CCGG 3 cut(s) 81, 515, 547
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 400, 538, 697
Hpy188III TCNNGA 1 cut(s) 553
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 151, 650
HpyCH4III ACNGT 4 cut(s) 34, 140, 315, 625
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 5 cut(s) 136, 188, 262, 493, 691
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 194, 238
HpyF3I CTNAG 4 cut(s) 167, 228, 429, 535
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 3 cut(s) 488, 606, 691
Kzo9I GATC 3 cut(s) 463, 495, 549
LmnI GCTCC 1 cut(s) 172
Lsp1109I GCAGC 5 cut(s) 26, 34, 225, 246, 412
LweI GCATC 5 cut(s) 34, 184, 238, 279, 480
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 28, 223
MalI GATC 3 cut(s) 465, 497, 551
MboI GATC 3 cut(s) 463, 495, 549
MboII GAAGA 3 cut(s) 647, 656, 674
MflI RGATCY 1 cut(s) 549
MhlI GDGCHC 2 cut(s) 138, 234
MluCI AATT 5 cut(s) 89, 327, 568, 578, 681
MnlI CCTC 7 cut(s) 58, 79, 244, 622, 631, 634, 670
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 3 cut(s) 81, 515, 547
MspR9I CCNGG 2 cut(s) 81, 547
MwoI GCNNNNNNNGC 3 cut(s) 53, 194, 238
NciI CCSGG 2 cut(s) 81, 547
NcoI CCATGG 1 cut(s) 484
NdeII GATC 3 cut(s) 463, 495, 549
NlaIII CATG 3 cut(s) 488, 606, 691
NlaIV GGNNCC 2 cut(s) 14, 551
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 2 cut(s) 28, 223
NspI RCATGY 1 cut(s) 691
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 419
PflMI CCANNNNNTGG 2 cut(s) 290, 559
PkrI GCNGC 5 cut(s) 41, 49, 240, 261, 427
PspN4I GGNNCC 2 cut(s) 14, 551
PspPI GGNCC 1 cut(s) 12
PstI CTGCAG 1 cut(s) 264
PstNI CAGNNNCTG 2 cut(s) 428, 542
PsuI RGATCY 1 cut(s) 549
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 5 cut(s) 40, 48, 239, 260, 426
Sau3AI GATC 3 cut(s) 463, 495, 549
Sau96I GGNCC 1 cut(s) 12
ScrFI CCNGG 2 cut(s) 81, 547
SduI GDGCHC 2 cut(s) 138, 234
SfaNI GCATC 5 cut(s) 34, 184, 238, 279, 480
SfcI CTRYAG 1 cut(s) 260
SinI GGWCC 1 cut(s) 12
Sse9I AATT 5 cut(s) 89, 327, 568, 578, 681
SsiI CCGC 1 cut(s) 50
StyD4I CCNGG 2 cut(s) 79, 545
StyI CCWWGG 2 cut(s) 105, 484
TaaI ACNGT 4 cut(s) 34, 140, 315, 625
TaiI ACGT 1 cut(s) 414
TasI AATT 5 cut(s) 89, 327, 568, 578, 681
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 2 cut(s) 28, 223
TseI GCWGC 5 cut(s) 39, 47, 238, 259, 425
Tsp45I GTSAC 2 cut(s) 28, 223
TspRI CASTG 1 cut(s) 37
Van91I CCANNNNNTGG 2 cut(s) 290, 559
VneI GTGCAC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 691
XmnI GAANNNNTTC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.