Rh5AG186500

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001272
Physical Location & Seq
Reverse (-)
21381051 .. 21388132
7082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG186500.1

Sequence Viewer

Length: 687 bp
ATGCCAAAACGGTGCCGTGCCGATCTTGATCTCGACCTCGTCGCTGTCCCTCTTCTTGGGATTCCGGCCTTGAACCTCAGAAGTGCCTTTGTGCCCCAAAATGGGCTCAGAAAGGGCTTCGCTTGCGGTGGATTGAAATGGAGGCTTGAGACCCAAAATAGGCAGGTCACTGTTCGCTGCGATGCTGCGGTCGCCGAGAAAGAGGTCGCCGATACGCCCGGTGAGGAATTCCAGTACCAAGCCGAGGTCAGTCGGCTAATGGATTTGATAGTGCACAGTCTATACAGCCACAAGAAGGTAGTTGTTTCTACAAAAAGCCCAAAATCAGACAAGCAATACGTCTGGGAATCAGCTGCTGAGAGTAGCTCTTATATGATTAGGGTAGAAACTGATCCAGAAAATATCATTAGCCGTGGGACGCAGATCAAACTATATTTAAGGCCGGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGGTAAAGAATTACTCACAATTTGTTTCTTTCCCCATCTACACATGGCAAGAAAAATCAAGGACTGTTGAGACAACACCAAGTTCCGAAAAAACTATCAAATACAAAGTGCGCCAAACAATTGGATCAGTTTCTCGCCAAGTTCCGAAAACAACTGATCATTTACAAACTACCAAACTTGGATCACTTACCAAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

228

Amino Acids

25.91

Weight (kDa)

9.33

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP90 PF00183 153 - 196 1.8e-08 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 154
AccB1I GGYRCC 1 cut(s) 12
AccB7I CCANNNNNTGG 1 cut(s) 487
AciI CCGC 2 cut(s) 126, 188
AclWI GGATC 5 cut(s) 386, 472, 485, 619, 676
AcsI RAATTY 1 cut(s) 227
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 7 cut(s) 56, 101, 102, 159, 244, 295, 487
AgsI TTSAA 2 cut(s) 73, 136
AluBI AGCT 2 cut(s) 353, 366
AluI AGCT 2 cut(s) 353, 366
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 2 cut(s) 143, 551
Alw44I GTGCAC 1 cut(s) 272
AlwI GGATC 5 cut(s) 386, 472, 485, 619, 676
AlwNI CAGNNNCTG 2 cut(s) 356, 470
AoxI GGCC 2 cut(s) 66, 440
ApaLI GTGCAC 1 cut(s) 272
ApeKI GCWGC 3 cut(s) 177, 185, 353
ApoI RAATTY 1 cut(s) 227
AspLEI GCGC 1 cut(s) 600
AsuC2I CCSGG 2 cut(s) 219, 475
AsuHPI GGTGA 1 cut(s) 233
BaeGI GKGCMC 2 cut(s) 96, 276
BamHI GGATCC 1 cut(s) 477
BanI GGYRCC 1 cut(s) 12
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 3 cut(s) 164, 172, 340
BccI CCATC 1 cut(s) 530
BceAI ACGGC 1 cut(s) 396
BclI TGATCA 1 cut(s) 643
BcnI CCSGG 2 cut(s) 219, 475
BcoDI GTCTC 2 cut(s) 143, 551
BfuAI ACCTGC 1 cut(s) 154
BisI GCNGC 3 cut(s) 178, 186, 354
BlsI GCNGC 3 cut(s) 179, 187, 355
Bme1390I CCNGG 2 cut(s) 219, 475
BmiI GGNNCC 2 cut(s) 14, 479
BmrFI CCNGG 2 cut(s) 219, 475
BmsI GCATC 1 cut(s) 172
BplI GAGNNNNNCTC 2 cut(s) 350, 382
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 2 cut(s) 219, 475
BsaBI GATNNNNATC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 243, 412
Bsc4I CCNNNNNNNGG 7 cut(s) 56, 101, 102, 159, 244, 295, 487
Bse1I ACTGG 1 cut(s) 232
Bse8I GATNNNNATC 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 243, 412
BseGI GGATG 1 cut(s) 451
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 7 cut(s) 56, 101, 102, 159, 244, 295, 487
BseMII CTCAG 4 cut(s) 91, 121, 348, 477
BseNI ACTGG 1 cut(s) 232
BseSI GKGCMC 2 cut(s) 96, 276
BseXI GCAGC 3 cut(s) 164, 172, 340
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 2 cut(s) 68, 442
BshNI GGYRCC 1 cut(s) 12
BsiEI CGRYCG 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 4 cut(s) 65, 219, 443, 475
BslFI GGGAC 2 cut(s) 32, 430
BslI CCNNNNNNNGG 7 cut(s) 56, 101, 102, 159, 244, 295, 487
BsmAI GTCTC 2 cut(s) 143, 551
BsmFI GGGAC 2 cut(s) 32, 430
BsnI GGCC 2 cut(s) 68, 442
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 3 cut(s) 96, 108, 276
Bsp143I GATC 8 cut(s) 22, 28, 391, 423, 477, 611, 643, 668
BspACI CCGC 2 cut(s) 126, 188
BspANI GGCC 2 cut(s) 68, 442
BspCNI CTCAG 4 cut(s) 90, 120, 349, 476
BspLI GGNNCC 2 cut(s) 14, 479
BspMI ACCTGC 1 cut(s) 154
BspPI GGATC 5 cut(s) 386, 472, 485, 619, 676
BspT107I GGYRCC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 243, 412
BssMI GATC 8 cut(s) 22, 28, 391, 423, 477, 611, 643, 668
Bst4CI ACNGT 4 cut(s) 12, 172, 278, 553
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 124, 471
BstDEI CTNAG 4 cut(s) 77, 107, 357, 463
BstDSI CCRYGG 1 cut(s) 412
BstF5I GGATG 1 cut(s) 451
BstHHI GCGC 1 cut(s) 600
BstKTI GATC 8 cut(s) 25, 31, 394, 426, 480, 614, 646, 671
BstMAI GTCTC 2 cut(s) 143, 551
BstMBI GATC 8 cut(s) 22, 28, 391, 423, 477, 611, 643, 668
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 2 cut(s) 123, 191
BstSCI CCNGG 2 cut(s) 217, 473
BstSLI GKGCMC 2 cut(s) 96, 276
BstV1I GCAGC 3 cut(s) 164, 172, 340
BstX2I RGATCY 1 cut(s) 477
BstXI CCANNNNNNTGG 1 cut(s) 608
BstYI RGATCY 1 cut(s) 477
BsuRI GGCC 2 cut(s) 68, 442
BtgI CCRYGG 1 cut(s) 412
BtgZI GCGATG 1 cut(s) 195
BtsCI GGATG 1 cut(s) 451
BtsIMutI CAGTG 1 cut(s) 168
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 124, 471
CaiI CAGNNNCTG 2 cut(s) 356, 470
CfoI GCGC 1 cut(s) 600
CseI GACGC 1 cut(s) 427
Csp6I GTAC 1 cut(s) 235
CviAII CATG 1 cut(s) 531
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 4 cut(s) 77, 107, 357, 463
DpnI GATC 8 cut(s) 24, 30, 393, 425, 479, 613, 645, 670
DpnII GATC 8 cut(s) 22, 28, 391, 423, 477, 611, 643, 668
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 108
FaeI CATG 1 cut(s) 534
FaiI YATR 6 cut(s) 283, 372, 374, 433, 456, 532
FaqI GGGAC 2 cut(s) 32, 430
FatI CATG 1 cut(s) 530
FbaI TGATCA 1 cut(s) 643
Fnu4HI GCNGC 3 cut(s) 178, 186, 354
FokI GGATG 1 cut(s) 458
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 3 cut(s) 178, 186, 354
GlaI GCGC 1 cut(s) 599
GluI GCNGC 3 cut(s) 178, 186, 354
HaeIII GGCC 2 cut(s) 68, 442
HapII CCGG 4 cut(s) 65, 219, 443, 475
HgaI GACGC 1 cut(s) 427
HhaI GCGC 1 cut(s) 600
Hin1II CATG 1 cut(s) 534
Hin6I GCGC 1 cut(s) 598
HinP1I GCGC 1 cut(s) 598
HinfI GANTC 2 cut(s) 61, 347
HpaII CCGG 4 cut(s) 65, 219, 443, 475
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 6 cut(s) 80, 110, 328, 466, 574, 633
Hpy188III TCNNGA 4 cut(s) 26, 32, 395, 481
Hpy8I GTNNAC 1 cut(s) 274
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 4 cut(s) 12, 172, 278, 553
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 191
HpyF3I CTNAG 4 cut(s) 77, 107, 357, 463
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 1 cut(s) 534
HspAI GCGC 1 cut(s) 598
Ksp22I TGATCA 1 cut(s) 643
Kzo9I GATC 8 cut(s) 22, 28, 391, 423, 477, 611, 643, 668
Lsp1109I GCAGC 3 cut(s) 164, 172, 340
LweI GCATC 1 cut(s) 172
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 1 cut(s) 166
MalI GATC 8 cut(s) 24, 30, 393, 425, 479, 613, 645, 670
MboI GATC 8 cut(s) 22, 28, 391, 423, 477, 611, 643, 668
MboII GAAGA 1 cut(s) 44
MfeI CAATTG 1 cut(s) 606
MflI RGATCY 1 cut(s) 477
MhlI GDGCHC 3 cut(s) 96, 108, 276
MluCI AATT 4 cut(s) 227, 496, 506, 606
MnlI CCTC 7 cut(s) 47, 60, 86, 135, 196, 217, 238
MseI TTAA 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 4 cut(s) 65, 219, 443, 475
MspR9I CCNGG 2 cut(s) 219, 475
MunI CAATTG 1 cut(s) 606
MwoI GCNNNNNNNGC 2 cut(s) 123, 191
NciI CCSGG 2 cut(s) 219, 475
NdeII GATC 8 cut(s) 22, 28, 391, 423, 477, 611, 643, 668
NlaIII CATG 1 cut(s) 534
NlaIV GGNNCC 2 cut(s) 14, 479
NmeAIII GCCGAG 2 cut(s) 220, 268
NmuCI GTSAC 1 cut(s) 166
PfeI GAWTC 2 cut(s) 61, 347
PflFI GACNNNGTC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 487
PkrI GCNGC 3 cut(s) 179, 187, 355
PspN4I GGNNCC 2 cut(s) 14, 479
PstNI CAGNNNCTG 2 cut(s) 356, 470
PsuI RGATCY 1 cut(s) 477
PsyI GACNNNGTC 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 3 cut(s) 178, 186, 354
Sau3AI GATC 8 cut(s) 22, 28, 391, 423, 477, 611, 643, 668
ScrFI CCNGG 2 cut(s) 219, 475
SduI GDGCHC 3 cut(s) 96, 108, 276
SetI ASST 9 cut(s) 39, 78, 168, 207, 249, 300, 342, 355, 368
SfaNI GCATC 1 cut(s) 172
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 4 cut(s) 227, 496, 506, 606
SsiI CCGC 2 cut(s) 126, 188
StyD4I CCNGG 2 cut(s) 217, 473
TaaI ACNGT 4 cut(s) 12, 172, 278, 553
TaiI ACGT 1 cut(s) 342
TaqI TCGA 1 cut(s) 33
TasI AATT 4 cut(s) 227, 496, 506, 606
TfiI GAWTC 2 cut(s) 61, 347
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 3 cut(s) 177, 185, 353
Tsp45I GTSAC 1 cut(s) 166
TspRI CASTG 1 cut(s) 175
Tth111I GACNNNGTC 1 cut(s) 38
Van91I CCANNNNNTGG 1 cut(s) 487
VneI GTGCAC 1 cut(s) 272
XapI RAATTY 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.