RchiOBHm_Chr2g0102621

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001272
Physical Location & Seq
Forward (+)
14110785 .. 14113043
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47703

Sequence Viewer

Length: 441 bp
ATGACTAAGGTGGAACTCATTGACTTCCTTGGTACCATTGCTCAGAGTGGTACTTCAAAATTCTTTACGGCTCTGAAGGAAAATAAGGATCTTGGTGCAGACAACGGTTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGATTTTCTTGTTGCTGAGAAGGTAGTTGTTTCTACAAAAAGCCCAAAATCAGACAAGCAATACGTCTGGGAATTAGCTGCTGAGAGTAGCTCTTATATGATTAGGGTAGAAACTGATCCAAAAAATATCATTAGCTATGGGACACAGATCAAACTATATTTAAGGCCGGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGGTAAAGAATTACTCACAATTTGTTTCTTTCCCCATCTACACATGGCAAGAAAAATCAAGGACTGTTGAGGTTGAAGAGGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

146

Amino Acids

16.65

Weight (kDa)

4.91

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP90 PF00183 108 - 146 6.2e-09 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 352
AclWI GGATC 4 cut(s) 96, 251, 337, 350
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 2 cut(s) 34, 52
AfiI CCNNNNNNNGG 1 cut(s) 352
AgsI TTSAA 2 cut(s) 57, 428
AluBI AGCT 3 cut(s) 218, 231, 276
AluI AGCT 3 cut(s) 218, 231, 276
AlwI GGATC 4 cut(s) 96, 251, 337, 350
AlwNI CAGNNNCTG 1 cut(s) 335
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 59
Asp718I GGTACC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 340
BamHI GGATCC 1 cut(s) 342
BanI GGYRCC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 205
BccI CCATC 1 cut(s) 395
BceAI ACGGC 1 cut(s) 84
BcnI CCSGG 1 cut(s) 340
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 340
BmiI GGNNCC 2 cut(s) 34, 344
BmrFI CCNGG 1 cut(s) 340
BplI GAGNNNNNCTC 2 cut(s) 215, 247
BpuMI CCSGG 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse3DI GCAATG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 4 cut(s) 56, 147, 213, 342
BseXI GCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 117
BshFI GGCC 1 cut(s) 307
BshNI GGYRCC 1 cut(s) 32
BsiSI CCGG 2 cut(s) 308, 340
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 1 cut(s) 352
BsmFI GGGAC 1 cut(s) 295
BsnI GGCC 1 cut(s) 307
Bsp143I GATC 4 cut(s) 88, 256, 288, 342
BspANI GGCC 1 cut(s) 307
BspCNI CTCAG 4 cut(s) 55, 148, 214, 341
BspLI GGNNCC 2 cut(s) 34, 344
BspPI GGATC 4 cut(s) 96, 251, 337, 350
BspT107I GGYRCC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 4 cut(s) 88, 256, 288, 342
BssT1I CCWWGG 1 cut(s) 28
Bst4CI ACNGT 2 cut(s) 107, 418
Bst6I CTCTTC 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 5 cut(s) 6, 42, 156, 222, 328
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 4 cut(s) 91, 259, 291, 345
BstMBI GATC 4 cut(s) 88, 256, 288, 342
BstSCI CCNGG 1 cut(s) 338
BstV1I GCAGC 1 cut(s) 205
BstX2I RGATCY 2 cut(s) 88, 342
BstYI RGATCY 2 cut(s) 88, 342
BsuRI GGCC 1 cut(s) 307
BtsCI GGATG 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 336
CaiI CAGNNNCTG 1 cut(s) 335
Csp6I GTAC 2 cut(s) 33, 51
CviAII CATG 1 cut(s) 396
CviJI RGCY 7 cut(s) 71, 183, 218, 231, 276, 307, 334
CviKI_1 RGCY 7 cut(s) 71, 183, 218, 231, 276, 307, 334
CviQI GTAC 2 cut(s) 33, 51
DdeI CTNAG 5 cut(s) 6, 42, 156, 222, 328
DpnI GATC 4 cut(s) 90, 258, 290, 344
DpnII GATC 4 cut(s) 88, 256, 288, 342
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 1 cut(s) 399
FaiI YATR 6 cut(s) 237, 239, 279, 298, 321, 397
FaqI GGGAC 1 cut(s) 295
FatI CATG 1 cut(s) 395
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 307
HapII CCGG 2 cut(s) 308, 340
Hin1II CATG 1 cut(s) 399
HpaII CCGG 2 cut(s) 308, 340
Hpy188I TCNGA 5 cut(s) 45, 75, 142, 193, 331
Hpy188III TCNNGA 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 70, 154
HpyCH4III ACNGT 2 cut(s) 107, 418
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 1 cut(s) 98
HpyF3I CTNAG 5 cut(s) 6, 42, 156, 222, 328
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 1 cut(s) 399
KpnI GGTACC 1 cut(s) 36
Kzo9I GATC 4 cut(s) 88, 256, 288, 342
LpnPI CCDG 5 cut(s) 193, 321, 348, 353, 359
Lsp1109I GCAGC 1 cut(s) 205
MaeII ACGT 1 cut(s) 204
MalI GATC 4 cut(s) 90, 258, 290, 344
MboI GATC 4 cut(s) 88, 256, 288, 342
MboII GAAGA 1 cut(s) 440
MflI RGATCY 2 cut(s) 88, 342
MluCI AATT 5 cut(s) 59, 119, 212, 361, 371
MnlI CCTC 3 cut(s) 415, 424, 427
MseI TTAA 1 cut(s) 302
MspI CCGG 2 cut(s) 308, 340
MspR9I CCNGG 1 cut(s) 340
NciI CCSGG 1 cut(s) 340
NdeII GATC 4 cut(s) 88, 256, 288, 342
NlaIII CATG 1 cut(s) 399
NlaIV GGNNCC 2 cut(s) 34, 344
PflMI CCANNNNNTGG 1 cut(s) 352
PkrI GCNGC 1 cut(s) 220
PspN4I GGNNCC 2 cut(s) 34, 344
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 2 cut(s) 88, 342
RsaI GTAC 2 cut(s) 34, 52
RsaNI GTAC 2 cut(s) 33, 51
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 4 cut(s) 88, 256, 288, 342
ScrFI CCNGG 1 cut(s) 340
SetI ASST 7 cut(s) 12, 165, 207, 220, 233, 278, 426
Sse9I AATT 5 cut(s) 59, 119, 212, 361, 371
StyD4I CCNGG 1 cut(s) 338
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 2 cut(s) 107, 418
TaiI ACGT 1 cut(s) 207
TasI AATT 5 cut(s) 59, 119, 212, 361, 371
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TseI GCWGC 1 cut(s) 218
Van91I CCANNNNNTGG 1 cut(s) 352
XapI RAATTY 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.