Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001272

Physical Location & Seq

Genomic Coordinates Reverse (-)

9599762 .. 9602395

Gene Structure 2634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG115400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTGTCATTTATCTCTCAATACCTCTCCATTCACTACAACTTCGAAGATCAGTCTACCCTCCTCAACAGCTCCGTCGATGTTGGTCCCAGATTGCAATTCCGTGCTTCCCATGATCTCAAGGGATACTGGTATTGGGATGACGAAGGAGGAACTCATTGACTGCCTTGGTACCATTGCTCAGAGTGGTACTTCAAAATTCTTGACGGCTCTGAAGGGGTTGATGTTAAACAAGGAAGGGTATGCTTCTATAGGAGGTGGTTCACCCTTGTGTAAGATGACAGATGAGCAGGCAAATGCACTGAAAATGGCTTTGGAATCAAAGGACATGCCGGTGAATGTCTATGTGGGAATGCGGTACTGGTTCCCGTTCACTGAGGAAGCAGTTCATCAAGTGAGTGTTCTAAGTCTTGTAGAAATAATGTGTAATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Ferrochelatase

Protein Analysis

144

Amino Acids

15.53

Weight (kDa)

5.08

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferrochelatase	PF00762	78 - 133	1.9e-14	Ferrochelatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04030 AT2G04030
fragaria_vesca	FvH4_4g29020 FvH4_4g29020
malus_domestica	MD13G1055300.v1.1 MD16G1054100.v1.1
prunus_persica	Prupe.1G295600_v2.0.a1
pyrus_communis	pycom16g04710
rosa_chinensis	RchiOBHm_Chr2g0102611 RchiOBHm_Chr2g0102621 RchiOBHm_Chr4g0437121 RchiOBHm_Chr6g0247561
rosa_laevigata	RLG00000031307 RLG00000031514 RLG00000035259
rosa_multiflora	Rmu_sc0000081.1_g000011 Rmu_sc0000082.1_g000018 Rmu_sc0004671.1_g000001 Rmu_sc0015724.1_g000001 Rmu_ssc0000006.1_g000007 Rmu_ssc0000451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110100 Rroxscaffold_2G00153330 Rroxscaffold_5G00378190 Rroxscaffold_6G00388360
rosa_rugosa	Rorug02G0184900 Rorug04G0298200 Rorug05G0411600 Rorug05G0445800.1 Rorug07G0145900.1
rosa_samantha	Rh1AG407900 Rh1AG446200 Rh1CG270300 Rh2AG219900 Rh2AG346800 Rh2CG162200 Rh2CG583400 Rh2DG226200 Rh3CG308200 Rh3DG115400 Rh4AG029500 Rh4AG299500 Rh4AG353000 Rh4BG306400 Rh4BG362500 Rh4CG376700 Rh4DG356500 Rh5AG186500 Rh5BG542300 Rh5DG106600 Rh5DG106700 Rh6CG106400
rosa_wichuraiana	Rw2G017120 Rw3G013500 Rw4G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	55
AciI	CCGC	1 cut(s)	355
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	3 cut(s)	172, 190, 359
AgsI	TTSAA	1 cut(s)	195
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AleI	CACNNNNGTG	1 cut(s)	268
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	197
Asp700I	GAANNNNTTC	1 cut(s)	384
Asp718I	GGTACC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	2 cut(s)	255, 346
AsuII	TTCGAA	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	222
BciVI	GTATCC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	433
BfmI	CTRYAG	1 cut(s)	249
BfuI	GTATCC	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	3 cut(s)	87, 172, 365
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	331
Bse1I	ACTGG	2 cut(s)	133, 365
Bse3DI	GCAATG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	194, 366
BseNI	ACTGG	2 cut(s)	133, 365
BseRI	GAGGAG	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	357
Bsp119I	TTCGAA	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	48, 114
BspACI	CCGC	1 cut(s)	355
BspCNI	CTCAG	2 cut(s)	193, 367
BspLI	GGNNCC	3 cut(s)	87, 172, 365
BspT104I	TTCGAA	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	331
BsrI	ACTGG	2 cut(s)	133, 365
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	48, 114
BssT1I	CCWWGG	1 cut(s)	166
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	3 cut(s)	180, 375, 404
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	2 cut(s)	51, 117
BstMBI	GATC	2 cut(s)	48, 114
BstNSI	RCATGY	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	249
BsuI	GTATCC	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	299, 372
Cac8I	GCNNGC	1 cut(s)	291
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	3 cut(s)	171, 189, 358
CviAII	CATG	2 cut(s)	112, 328
CviJI	RGCY	3 cut(s)	71, 209, 311
CviKI_1	RGCY	3 cut(s)	71, 209, 311
CviQI	GTAC	3 cut(s)	171, 189, 358
DdeI	CTNAG	3 cut(s)	180, 375, 404
DpnI	GATC	2 cut(s)	50, 116
DpnII	GATC	2 cut(s)	48, 114
Eco130I	CCWWGG	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	2 cut(s)	115, 331
FaiI	YATR	5 cut(s)	113, 243, 251, 329, 345
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	111, 327
FblI	GTMKAC	1 cut(s)	55
FokI	GGATG	1 cut(s)	151
FspBI	CTAG	1 cut(s)	433
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	2 cut(s)	115, 331
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	2 cut(s)	255, 346
Hpy166II	GTNNAC	3 cut(s)	56, 263, 372
Hpy188I	TCNGA	2 cut(s)	183, 213
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	3 cut(s)	56, 263, 372
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	3 cut(s)	139, 208, 230
HpyCH4V	TGCA	2 cut(s)	96, 299
HpyF3I	CTNAG	3 cut(s)	180, 375, 404
Hsp92II	CATG	2 cut(s)	115, 331
KpnI	GGTACC	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	48, 114
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	5 cut(s)	102, 114, 275, 345, 346
MaeI	CTAG	1 cut(s)	433
MalI	GATC	2 cut(s)	50, 116
MboI	GATC	2 cut(s)	48, 114
MboII	GAAGA	1 cut(s)	58
MluCI	AATT	2 cut(s)	97, 197
MnlI	CCTC	6 cut(s)	34, 70, 73, 142, 248, 370
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	1 cut(s)	227
MslI	CAYNNNNRTG	2 cut(s)	268, 332
MspI	CCGG	1 cut(s)	332
Mva1269I	GAATGC	1 cut(s)	357
NdeII	GATC	2 cut(s)	48, 114
NlaIII	CATG	2 cut(s)	115, 331
NlaIV	GGNNCC	3 cut(s)	87, 172, 365
NspI	RCATGY	1 cut(s)	331
NspV	TTCGAA	1 cut(s)	44
OliI	CACNNNNGTG	1 cut(s)	268
PctI	GAATGC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	317
PspN4I	GGNNCC	3 cut(s)	87, 172, 365
PspPI	GGNCC	1 cut(s)	85
RsaI	GTAC	3 cut(s)	172, 190, 359
RsaNI	GTAC	3 cut(s)	171, 189, 358
RseI	CAYNNNNRTG	2 cut(s)	268, 332
SaqAI	TTAA	1 cut(s)	227
Sau3AI	GATC	2 cut(s)	48, 114
Sau96I	GGNCC	1 cut(s)	85
SetI	ASST	3 cut(s)	26, 73, 259
SfcI	CTRYAG	1 cut(s)	249
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	1 cut(s)	85
SmiMI	CAYNNNNRTG	2 cut(s)	268, 332
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	2 cut(s)	97, 197
SsiI	CCGC	1 cut(s)	355
SspMI	CTAG	1 cut(s)	433
StyI	CCWWGG	1 cut(s)	166
TaqI	TCGA	2 cut(s)	44, 77
TasI	AATT	2 cut(s)	97, 197
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	2 cut(s)	306, 379
TspDTI	ATGAA	1 cut(s)	377
TspGWI	ACGGA	2 cut(s)	63, 91
TspRI	CASTG	2 cut(s)	306, 379
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	1 cut(s)	197
XceI	RCATGY	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.