RLG00000031307

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001272
Physical Location & Seq
Forward (+)
3939880 .. 3944876
4997 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031307

Sequence Viewer

Length: 1089 bp
ATGCCCGGTGATGATCCGCGTCGCCGTCGTCTCCGGTCACGAAAACCAAACCTCCTTCACTTCTCTGATGGTGGCGATGTCGAGGCCTTCGGAATCCGACTGAAACTCTGTCTCTGTCAGATCCGATTGGCGGAGCAGTACAGCCTGGTCACTGTTCGCTGCGATGCTGCGGTCGCCGATACGCCCGGTGAGGAATTCCAGTACCAAGCCGAGGTCAGTCGGCTAATGGATTTGATAGTGCACAGTCTATACAGCCACAAGAAGGTGTTCCTTAGGGAGCGTGTTAGTAATGCAAGTGATGCTTTGGACAAGTTGAGATTTTTGAGTGTGACTGAGCCCTCGTTGCTTGGAGATGCTGTTGAGCTGCAGATACGTATCAAACCCGACCCAGAGAATGGGACTATCACTATAACGGATACTGGTATTGGGATGACGAAGGAGGAACTCATTGACTGCCTTGGTACCATTGCTCAGAGTGGTACTTCAAAATTCTTGACGGCTCTGAAGGAAAATAAGGATCTTGGTGCAGACAACGGTTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCTTTTCTTGTTGCGGACAAGGTAGTTGTTTCTACAAAAAGCCCAAAATCAGATAAGCAATACGTCTGGGAATCAGCTGCTGAGAGTAGCTCTTATGTGATTAGGGTAGAAACTGATCCAGAAAATATCATTAGCCGTGGGACGCAGGTCAAACTATATTTAAGGCCGGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGGTAAAGAATTACTCGCAATTTGTTTCTTTCCCCATCTACACATGGCAAGAAAAGTCAAGGACTGTTGAGGTTGAAGAGGAGGAAGAACCAAAGGAAGGAGAAGAACCAAAGCCAGAGGGTGAGAAGAAAAAGAAGACTATAACTGAGAAGTATTGGGATTGGGAATTAGCCAATGAAACAAAGCCTATATGGTCCTCTGATATCAGAATGAGAGGAATCAAAGAGAACTCAATCCTCTCTTTCAATATTGCTGCACAATTCCCAATTGATTTTGTTGATTTCGACGTTCAGATTGTGACACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

363

Amino Acids

41.06

Weight (kDa)

5.15

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 117 - 222 5.6e-09 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90 PF00183 251 - 328 1.6e-16 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 706
Acc65I GGTACC 1 cut(s) 461
AccB1I GGYRCC 1 cut(s) 461
AccB7I CCANNNNNTGG 2 cut(s) 395, 781
AccII CGCG 1 cut(s) 19
AciI CCGC 4 cut(s) 17, 131, 170, 584
AclWI GGATC 6 cut(s) 8, 115, 525, 680, 766, 779
AcsI RAATTY 2 cut(s) 194, 488
AcuI CTGAAG 1 cut(s) 524
AfaI GTAC 4 cut(s) 140, 203, 463, 481
AfiI CCNNNNNNNGG 6 cut(s) 130, 211, 262, 395, 781, 878
AgsI TTSAA 3 cut(s) 486, 857, 1027
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 3 cut(s) 364, 647, 660
AluI AGCT 3 cut(s) 364, 647, 660
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 2 cut(s) 35, 116
Alw44I GTGCAC 1 cut(s) 239
AlwI GGATC 6 cut(s) 8, 115, 525, 680, 766, 779
AlwNI CAGNNNCTG 2 cut(s) 650, 764
AoxI GGCC 2 cut(s) 84, 734
ApaLI GTGCAC 1 cut(s) 239
ApeKI GCWGC 5 cut(s) 159, 167, 364, 647, 1034
ApoI RAATTY 2 cut(s) 194, 488
Asp700I GAANNNNTTC 1 cut(s) 266
Asp718I GGTACC 1 cut(s) 461
AspS9I GGNCC 1 cut(s) 975
AsuC2I CCSGG 3 cut(s) 6, 186, 769
AsuHPI GGTGA 3 cut(s) 20, 200, 914
AvaII GGWCC 1 cut(s) 975
AxyI CCTNAGG 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 243
BamHI GGATCC 1 cut(s) 771
BanI GGYRCC 1 cut(s) 461
BanII GRGCYC 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 923
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 5 cut(s) 146, 154, 351, 634, 1021
BccI CCATC 2 cut(s) 62, 824
BceAI ACGGC 3 cut(s) 9, 513, 690
BciT130I CCWGG 1 cut(s) 146
BciVI GTATCC 1 cut(s) 409
BcnI CCSGG 3 cut(s) 6, 186, 769
BcoDI GTCTC 2 cut(s) 35, 116
BfmI CTRYAG 1 cut(s) 365
BfuAI ACCTGC 1 cut(s) 706
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 5 cut(s) 160, 168, 365, 648, 1035
BlsI GCNGC 5 cut(s) 161, 169, 366, 649, 1036
Bme1390I CCNGG 4 cut(s) 6, 146, 186, 769
Bme18I GGWCC 1 cut(s) 975
BmgT120I GGNCC 1 cut(s) 975
BmiI GGNNCC 2 cut(s) 463, 773
BmrFI CCNGG 4 cut(s) 6, 146, 186, 769
BmsI GCATC 3 cut(s) 154, 289, 343
BoxI GACNNNNGTC 1 cut(s) 716
BpiI GAAGAC 1 cut(s) 923
BplI GAGNNNNNCTC 2 cut(s) 644, 676
BpuMI CCSGG 3 cut(s) 6, 186, 769
BsaAI YACGTR 1 cut(s) 374
BsaBI GATNNNNATC 1 cut(s) 374
BsaJI CCNNGG 3 cut(s) 210, 457, 706
BsaWI WCCGGW 1 cut(s) 33
BsaXI ACNNNNNCTCC 4 cut(s) 36, 66, 342, 372
Bsc4I CCNNNNNNNGG 6 cut(s) 130, 211, 262, 395, 781, 878
Bse1I ACTGG 2 cut(s) 199, 424
Bse21I CCTNAGG 1 cut(s) 272
Bse3DI GCAATG 1 cut(s) 465
Bse8I GATNNNNATC 1 cut(s) 374
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 3 cut(s) 210, 457, 706
BseGI GGATG 2 cut(s) 435, 745
BseJI GATNNNNATC 1 cut(s) 374
BseLI CCNNNNNNNGG 6 cut(s) 130, 211, 262, 395, 781, 878
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 5 cut(s) 324, 485, 642, 771, 918
BseNI ACTGG 2 cut(s) 199, 424
BseRI GAGGAG 1 cut(s) 875
BseSI GKGCMC 1 cut(s) 243
BseXI GCAGC 5 cut(s) 146, 154, 351, 634, 1021
BsgI GTGCAG 2 cut(s) 546, 1020
Bsh1236I CGCG 1 cut(s) 19
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 86, 736
BshNI GGYRCC 1 cut(s) 461
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 5 cut(s) 6, 34, 186, 737, 769
BslFI GGGAC 2 cut(s) 412, 724
BslI CCNNNNNNNGG 6 cut(s) 130, 211, 262, 395, 781, 878
BsmAI GTCTC 2 cut(s) 35, 116
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 2 cut(s) 412, 724
BsnI GGCC 2 cut(s) 86, 736
Bsp1286I GDGCHC 2 cut(s) 243, 339
Bsp143I GATC 5 cut(s) 13, 120, 517, 685, 771
BspACI CCGC 4 cut(s) 17, 131, 170, 584
BspANI GGCC 2 cut(s) 86, 736
BspCNI CTCAG 5 cut(s) 325, 484, 643, 770, 919
BspFNI CGCG 1 cut(s) 19
BspLI GGNNCC 2 cut(s) 463, 773
BspMAI CTGCAG 1 cut(s) 369
BspMI ACCTGC 1 cut(s) 706
BspPI GGATC 6 cut(s) 8, 115, 525, 680, 766, 779
BspT107I GGYRCC 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 2 cut(s) 199, 424
BssECI CCNNGG 3 cut(s) 210, 457, 706
BssMI GATC 5 cut(s) 13, 120, 517, 685, 771
BssT1I CCWWGG 1 cut(s) 457
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 4 cut(s) 154, 245, 536, 847
Bst6I CTCTTC 1 cut(s) 852
BstAPI GCANNNNNTGC 1 cut(s) 299
BstBAI YACGTR 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 765
BstDEI CTNAG 6 cut(s) 272, 333, 471, 651, 757, 927
BstDSI CCRYGG 1 cut(s) 706
BstF5I GGATG 2 cut(s) 435, 745
BstFNI CGCG 1 cut(s) 19
BstKTI GATC 5 cut(s) 16, 123, 520, 688, 774
BstMAI GTCTC 2 cut(s) 35, 116
BstMBI GATC 5 cut(s) 13, 120, 517, 685, 771
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 3 cut(s) 173, 299, 343
BstNI CCWGG 1 cut(s) 146
BstPAI GACNNNNGTC 1 cut(s) 716
BstSCI CCNGG 4 cut(s) 4, 144, 184, 767
BstSFI CTRYAG 1 cut(s) 365
BstSLI GKGCMC 1 cut(s) 243
BstSNI TACGTA 1 cut(s) 374
BstUI CGCG 1 cut(s) 19
BstV1I GCAGC 5 cut(s) 146, 154, 351, 634, 1021
BstV2I GAAGAC 1 cut(s) 923
BstX2I RGATCY 3 cut(s) 120, 517, 771
BstYI RGATCY 3 cut(s) 120, 517, 771
Bsu36I CCTNAGG 1 cut(s) 272
BsuI GTATCC 1 cut(s) 409
BsuRI GGCC 2 cut(s) 86, 736
BtgI CCRYGG 1 cut(s) 706
BtgZI GCGATG 2 cut(s) 90, 177
BtsCI GGATG 2 cut(s) 435, 745
BtsIMutI CAGTG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 706
Cac8I GCNNGC 1 cut(s) 765
CaiI CAGNNNCTG 2 cut(s) 650, 764
Cfr13I GGNCC 1 cut(s) 975
CseI GACGC 2 cut(s) 8, 721
Csp6I GTAC 4 cut(s) 139, 202, 462, 480
CviAII CATG 1 cut(s) 825
CviQI GTAC 4 cut(s) 139, 202, 462, 480
DdeI CTNAG 6 cut(s) 272, 333, 471, 651, 757, 927
DpnI GATC 5 cut(s) 15, 122, 519, 687, 773
DpnII GATC 5 cut(s) 13, 120, 517, 685, 771
Eam1104I CTCTTC 1 cut(s) 852
EarI CTCTTC 1 cut(s) 852
EciI GGCGGA 1 cut(s) 146
Eco105I TACGTA 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 457
Eco147I AGGCCT 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 339
Eco32I GATATC 1 cut(s) 985
Eco47I GGWCC 1 cut(s) 975
Eco57I CTGAAG 1 cut(s) 524
Eco81I CCTNAGG 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 144
EcoRV GATATC 1 cut(s) 985
EcoT14I CCWWGG 1 cut(s) 457
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 457
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 1 cut(s) 828
FaiI YATR 9 cut(s) 250, 410, 666, 727, 750, 826, 923, 971, 973
FalI AAGNNNNNCTT 2 cut(s) 286, 318
FaqI GGGAC 2 cut(s) 412, 724
FatI CATG 1 cut(s) 824
Fnu4HI GCNGC 5 cut(s) 160, 168, 365, 648, 1035
FokI GGATG 2 cut(s) 442, 752
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 5 cut(s) 160, 168, 365, 648, 1035
GluI GCNGC 5 cut(s) 160, 168, 365, 648, 1035
HaeIII GGCC 2 cut(s) 86, 736
HapII CCGG 5 cut(s) 6, 34, 186, 737, 769
HgaI GACGC 2 cut(s) 8, 721
Hin1II CATG 1 cut(s) 828
HinfI GANTC 3 cut(s) 93, 641, 999
HpaII CCGG 5 cut(s) 6, 34, 186, 737, 769
HphI GGTGA 3 cut(s) 20, 200, 914
Hpy166II GTNNAC 1 cut(s) 241
Hpy188III TCNNGA 4 cut(s) 39, 493, 689, 775
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 3 cut(s) 24, 30, 1070
HpyAV CCTTC 6 cut(s) 65, 97, 256, 430, 499, 872
HpyCH4III ACNGT 4 cut(s) 154, 245, 536, 847
HpyCH4IV ACGT 3 cut(s) 373, 633, 1068
HpyCH4V TGCA 5 cut(s) 241, 293, 367, 527, 1037
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 299, 343
HpyF3I CTNAG 6 cut(s) 272, 333, 471, 651, 757, 927
HpySE526I ACGT 3 cut(s) 373, 633, 1068
Hsp92II CATG 1 cut(s) 828
KpnI GGTACC 1 cut(s) 465
Kzo9I GATC 5 cut(s) 13, 120, 517, 685, 771
LmnI GCTCC 2 cut(s) 133, 277
Lsp1109I GCAGC 5 cut(s) 146, 154, 351, 634, 1021
LweI GCATC 3 cut(s) 154, 289, 343
MaeII ACGT 3 cut(s) 373, 633, 1068
MaeIII GTNAC 4 cut(s) 36, 148, 328, 1078
MalI GATC 5 cut(s) 15, 122, 519, 687, 773
MboI GATC 5 cut(s) 13, 120, 517, 685, 771
MboII GAAGA 5 cut(s) 869, 878, 896, 919, 928
MfeI CAATTG 1 cut(s) 1047
MflI RGATCY 3 cut(s) 120, 517, 771
MhlI GDGCHC 2 cut(s) 243, 339
MluCI AATT 8 cut(s) 194, 488, 548, 790, 800, 947, 1040, 1047
MmeI TCCRAC 1 cut(s) 121
MroXI GAANNNNTTC 1 cut(s) 266
MseI TTAA 2 cut(s) 731, 1087
MspA1I CMGCKG 1 cut(s) 647
MspI CCGG 5 cut(s) 6, 34, 186, 737, 769
MspR9I CCNGG 4 cut(s) 6, 146, 186, 769
MunI CAATTG 1 cut(s) 1047
MvaI CCWGG 1 cut(s) 146
MvnI CGCG 1 cut(s) 19
MwoI GCNNNNNNNGC 3 cut(s) 173, 299, 343
NciI CCSGG 3 cut(s) 6, 186, 769
NdeII GATC 5 cut(s) 13, 120, 517, 685, 771
NlaIII CATG 1 cut(s) 828
NlaIV GGNNCC 2 cut(s) 463, 773
NmeAIII GCCGAG 1 cut(s) 235
NmuCI GTSAC 4 cut(s) 36, 148, 328, 1078
PceI AGGCCT 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 266
PfeI GAWTC 3 cut(s) 93, 641, 999
PflMI CCANNNNNTGG 2 cut(s) 395, 781
PkrI GCNGC 5 cut(s) 161, 169, 366, 649, 1036
Ppu21I YACGTR 1 cut(s) 374
PshAI GACNNNNGTC 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 463, 773
PspPI GGNCC 1 cut(s) 975
PstI CTGCAG 1 cut(s) 369
PstNI CAGNNNCTG 2 cut(s) 650, 764
PsuI RGATCY 3 cut(s) 120, 517, 771
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 4 cut(s) 140, 203, 463, 481
RsaNI GTAC 4 cut(s) 139, 202, 462, 480
SaqAI TTAA 2 cut(s) 731, 1087
SatI GCNGC 5 cut(s) 160, 168, 365, 648, 1035
Sau3AI GATC 5 cut(s) 13, 120, 517, 685, 771
Sau96I GGNCC 1 cut(s) 975
ScrFI CCNGG 4 cut(s) 6, 146, 186, 769
SduI GDGCHC 2 cut(s) 243, 339
SfaNI GCATC 3 cut(s) 154, 289, 343
SfcI CTRYAG 1 cut(s) 365
SinI GGWCC 1 cut(s) 975
SnaBI TACGTA 1 cut(s) 374
Sse9I AATT 8 cut(s) 194, 488, 548, 790, 800, 947, 1040, 1047
SseBI AGGCCT 1 cut(s) 86
SsiI CCGC 4 cut(s) 17, 131, 170, 584
SspI AATATT 1 cut(s) 1030
StuI AGGCCT 1 cut(s) 86
StyD4I CCNGG 4 cut(s) 4, 144, 184, 767
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 4 cut(s) 154, 245, 536, 847
TaiI ACGT 3 cut(s) 376, 636, 1071
TaqI TCGA 2 cut(s) 81, 1065
TasI AATT 8 cut(s) 194, 488, 548, 790, 800, 947, 1040, 1047
TatI WGTACW 1 cut(s) 138
TfiI GAWTC 3 cut(s) 93, 641, 999
Tru1I TTAA 2 cut(s) 731, 1087
Tru9I TTAA 2 cut(s) 731, 1087
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 4 cut(s) 36, 148, 328, 1078
TseI GCWGC 5 cut(s) 159, 167, 364, 647, 1034
Tsp45I GTSAC 4 cut(s) 36, 148, 328, 1078
TspDTI ATGAA 1 cut(s) 972
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 1 cut(s) 157
Van91I CCANNNNNTGG 2 cut(s) 395, 781
VneI GTGCAC 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 975
XapI RAATTY 2 cut(s) 194, 488
XmnI GAANNNNTTC 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.