MD13G1266200.v1.1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000521
Physical Location & Seq
Forward (+)
34521000 .. 34522473
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1266200.v1.1.491

Sequence Viewer

Length: 702 bp
ATGATTGTTACCACCGGAACTGCAACGCTTCTACACTTGTTTATATGTTGGCTTTTGGTATACAAGACTAGCCTTGGATGTAGAGGTGCGGCCATGGCAAACTGCATCGCATATTGGATCAATGCATTGTTATTGTTTCTTTATTTCAGAGTCTCTCTCTCTTGTAAGCACAGATGGACTGGATTTTCAAAGGAGGCCTTCCATGGAATTTCCAGTTTTCTGAAACTATCTATTCCTTCAGCTATAATGATCAGGCGATCACGATTGGCCCGTCCAGCAACATTTGTTACACTTTTCATGGTTGCTACTGAAGGAATTGTGGCCGTTGCTGTCATTATATTGGGTCAAAAAGTTTGGGGTTACTGTTCCACAACAAAGAAAGAAGTTGTGGACTATGTTGGAGAAATATTACCGTGGGTTGCAATATCCCACTTTATTGATGGAATTCAATCCGTGCTTTCAGGTGTTATACGAGGAGGTGGACAACAGAAAATTGGGGCTTATGTTAATCTAGGAGCTTATTATCAAATGGGAATTCCTACTGCAGTATTATTAGCTTTTGTCCTGGACATTGGAGGAAAGGGTCTTTGGATTGGAATTACAGTGGCCTTGTTTGTGCAAGCATTATGTCTTTCAATCATAATCACATGCACTGACTGGGAGAAAGAAGTAAACTACTATGATCTGTTCTGTTTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

234

Amino Acids

25.7

Weight (kDa)

9.02

Isoelectric Point (pI)

24.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 85 - 183 9.5e-11 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis pycom13g23330
rosa_chinensis RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 60
AciI CCGC 1 cut(s) 89
AclWI GGATC 1 cut(s) 125
AcoI YGGCCR 2 cut(s) 90, 321
AcsI RAATTY 3 cut(s) 207, 444, 534
AcuI CTGAAG 2 cut(s) 222, 330
AgsI TTSAA 3 cut(s) 189, 449, 636
AjnI CCWGG 1 cut(s) 564
AjuI GAANNNNNNNTTGG 2 cut(s) 571, 603
AluBI AGCT 3 cut(s) 242, 518, 557
AluI AGCT 3 cut(s) 242, 518, 557
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 125
AoxI GGCC 5 cut(s) 90, 195, 267, 321, 606
ApoI RAATTY 3 cut(s) 207, 444, 534
AspS9I GGNCC 1 cut(s) 268
BccI CCATC 2 cut(s) 168, 434
BceAI ACGGC 1 cut(s) 308
BciT130I CCWGG 1 cut(s) 566
BclI TGATCA 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 2 cut(s) 69, 512
BfmI CTRYAG 1 cut(s) 543
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 566
BmrI ACTGGG 1 cut(s) 667
BmsI GCATC 1 cut(s) 114
BmuI ACTGGG 1 cut(s) 667
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BsaJI CCNNGG 4 cut(s) 73, 93, 202, 413
BsaWI WCCGGW 1 cut(s) 14
Bse1I ACTGG 3 cut(s) 184, 213, 662
BseBI CCWGG 1 cut(s) 566
BseDI CCNNGG 4 cut(s) 73, 93, 202, 413
BseGI GGATG 1 cut(s) 83
BseNI ACTGG 3 cut(s) 184, 213, 662
BseRI GAGGAG 1 cut(s) 489
BshFI GGCC 5 cut(s) 92, 197, 269, 323, 608
BsiSI CCGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 157
BsnI GGCC 5 cut(s) 92, 197, 269, 323, 608
Bsp143I GATC 4 cut(s) 117, 249, 257, 682
Bsp19I CCATGG 2 cut(s) 93, 202
BspACI CCGC 1 cut(s) 89
BspANI GGCC 5 cut(s) 92, 197, 269, 323, 608
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 1 cut(s) 125
BsrI ACTGG 3 cut(s) 184, 213, 662
BssECI CCNNGG 4 cut(s) 73, 93, 202, 413
BssMI GATC 4 cut(s) 117, 249, 257, 682
BssNAI GTATAC 1 cut(s) 61
BssT1I CCWWGG 3 cut(s) 73, 93, 202
Bst1107I GTATAC 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 3 cut(s) 365, 414, 604
BstC8I GCNNGC 1 cut(s) 621
BstDSI CCRYGG 3 cut(s) 93, 202, 413
BstF5I GGATG 1 cut(s) 83
BstKTI GATC 4 cut(s) 120, 252, 260, 685
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 4 cut(s) 117, 249, 257, 682
BstMWI GCNNNNNNNGC 2 cut(s) 95, 275
BstNI CCWGG 1 cut(s) 566
BstNSI RCATGY 1 cut(s) 651
BstSCI CCNGG 1 cut(s) 564
BstSFI CTRYAG 1 cut(s) 543
BstZ17I GTATAC 1 cut(s) 61
BsuRI GGCC 5 cut(s) 92, 197, 269, 323, 608
BtgI CCRYGG 3 cut(s) 93, 202, 413
BtgZI GCGATG 1 cut(s) 91
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 609, 651
Cac8I GCNNGC 1 cut(s) 621
Cfr13I GGNCC 1 cut(s) 268
CviAII CATG 4 cut(s) 94, 203, 298, 648
DpnI GATC 4 cut(s) 119, 251, 259, 684
DpnII GATC 4 cut(s) 117, 249, 257, 682
EaeI YGGCCR 2 cut(s) 90, 321
Eco130I CCWWGG 3 cut(s) 73, 93, 202
Eco147I AGGCCT 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 222, 330
EcoRI GAATTC 2 cut(s) 444, 534
EcoRII CCWGG 1 cut(s) 564
EcoT14I CCWWGG 3 cut(s) 73, 93, 202
EcoT22I ATGCAT 1 cut(s) 127
ErhI CCWWGG 3 cut(s) 73, 93, 202
FaeI CATG 4 cut(s) 97, 206, 301, 651
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 4 cut(s) 93, 202, 297, 647
FbaI TGATCA 1 cut(s) 249
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 2 cut(s) 69, 512
GluI GCNGC 1 cut(s) 90
HaeIII GGCC 5 cut(s) 92, 197, 269, 323, 608
HapII CCGG 1 cut(s) 15
Hin1II CATG 4 cut(s) 97, 206, 301, 651
HinfI GANTC 1 cut(s) 150
HpaII CCGG 1 cut(s) 15
Hpy166II GTNNAC 4 cut(s) 61, 391, 482, 673
Hpy188I TCNGA 2 cut(s) 149, 222
Hpy188III TCNNGA 1 cut(s) 261
Hpy8I GTNNAC 4 cut(s) 61, 391, 482, 673
HpyAV CCTTC 3 cut(s) 208, 246, 305
HpyCH4III ACNGT 3 cut(s) 365, 414, 604
HpyCH4V TGCA 7 cut(s) 23, 105, 125, 422, 545, 619, 651
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 275
Hsp92II CATG 4 cut(s) 97, 206, 301, 651
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 4 cut(s) 117, 249, 257, 682
LmnI GCTCC 1 cut(s) 515
LpnPI CCDG 9 cut(s) 28, 165, 226, 238, 288, 447, 551, 578, 643
LweI GCATC 1 cut(s) 114
MaeI CTAG 2 cut(s) 69, 512
MaeIII GTNAC 3 cut(s) 7, 286, 359
MalI GATC 4 cut(s) 119, 251, 259, 684
MboI GATC 4 cut(s) 117, 249, 257, 682
MluCI AATT 6 cut(s) 207, 315, 444, 492, 534, 597
MlyI GAGTC 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 5 cut(s) 77, 187, 467, 470, 569
Mph1103I ATGCAT 1 cut(s) 127
MseI TTAA 1 cut(s) 507
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 566
MvaI CCWGG 1 cut(s) 566
MwoI GCNNNNNNNGC 2 cut(s) 95, 275
NcoI CCATGG 2 cut(s) 93, 202
NdeII GATC 4 cut(s) 117, 249, 257, 682
NlaIII CATG 4 cut(s) 97, 206, 301, 651
NsiI ATGCAT 1 cut(s) 127
NspI RCATGY 1 cut(s) 651
PceI AGGCCT 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 268
PfoI TCCNGGA 1 cut(s) 564
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 564
PspGI CCWGG 1 cut(s) 564
PspPI GGNCC 1 cut(s) 268
PstI CTGCAG 1 cut(s) 547
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 4 cut(s) 117, 249, 257, 682
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 566
SetI ASST 6 cut(s) 88, 244, 466, 481, 520, 559
SfaNI GCATC 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 543
Sse9I AATT 6 cut(s) 207, 315, 444, 492, 534, 597
SseBI AGGCCT 1 cut(s) 197
SsiI CCGC 1 cut(s) 89
SspI AATATT 1 cut(s) 408
SspMI CTAG 2 cut(s) 69, 512
StuI AGGCCT 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 564
StyI CCWWGG 3 cut(s) 73, 93, 202
TaaI ACNGT 3 cut(s) 365, 414, 604
TasI AATT 6 cut(s) 207, 315, 444, 492, 534, 597
TauI GCSGC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 2 cut(s) 609, 658
TspDTI ATGAA 1 cut(s) 286
TspGWI ACGGA 1 cut(s) 442
TspRI CASTG 2 cut(s) 609, 658
XapI RAATTY 3 cut(s) 207, 444, 534
XceI RCATGY 1 cut(s) 651
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 2 cut(s) 69, 512
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.