Rorug04G0044700

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000521
Physical Location & Seq
Reverse (-)
6972634 .. 6972867
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0044700.1

Sequence Viewer

Length: 201 bp
ATGGAGTACTCTCACAAAGCTCATCAGTTGGCTGTTACTATGTTCGAATTATTATCGGAGTCTCTTGGTCTCAAATCTGACCACCTCCTACGTCACTACTATCCACCATGCCCTGAGCCTGAACTGACTATTGGAACTGGCAAGCACACAGATCCTAATTTTCTCACCATCCTACTTCAAGACCATATTGGTGGGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

66

Amino Acids

7.46

Weight (kDa)

5.76

Isoelectric Point (pI)

56.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 28 - 66 2.2e-11 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis pycom13g23330
rosa_chinensis RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 146
AfaI GTAC 1 cut(s) 8
AgsI TTSAA 1 cut(s) 179
AjuI GAANNNNNNNTTGG 2 cut(s) 114, 146
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 2 cut(s) 66, 74
AlwI GGATC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 157
AsuII TTCGAA 1 cut(s) 45
BccI CCATC 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 66, 74
BfmI CTRYAG 1 cut(s) 197
BmcAI AGTACT 1 cut(s) 8
Bpu10I CCTNAGC 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 142
BsmAI GTCTC 2 cut(s) 66, 74
Bso31I GGTCTC 1 cut(s) 74
Bsp119I TTCGAA 1 cut(s) 45
Bsp143I GATC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 106
BspPI GGATC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 142
BssMI GATC 1 cut(s) 151
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 168
BstKTI GATC 1 cut(s) 154
BstMAI GTCTC 2 cut(s) 66, 74
BstMBI GATC 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 151
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 1 cut(s) 151
BtsCI GGATG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 108
CviJI RGCY 4 cut(s) 20, 32, 118, 196
CviKI_1 RGCY 4 cut(s) 20, 32, 118, 196
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 74
FaeI CATG 1 cut(s) 111
FaiI YATR 4 cut(s) 41, 109, 186, 199
FatI CATG 1 cut(s) 107
FokI GGATG 1 cut(s) 155
Hin1II CATG 1 cut(s) 111
HinfI GANTC 1 cut(s) 59
HphI GGTGA 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 58, 79
Hpy188III TCNNGA 1 cut(s) 179
HpyCH4IV ACGT 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 1 cut(s) 111
Kzo9I GATC 1 cut(s) 151
LpnPI CCDG 3 cut(s) 123, 126, 132
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 2 cut(s) 34, 92
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MflI RGATCY 1 cut(s) 151
MluCI AATT 2 cut(s) 47, 157
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 189
NdeII GATC 1 cut(s) 151
NlaIII CATG 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 92
NspV TTCGAA 1 cut(s) 45
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 151
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 189
Sau3AI GATC 1 cut(s) 151
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 1 cut(s) 68
SetI ASST 3 cut(s) 22, 87, 94
SfcI CTRYAG 1 cut(s) 197
SfuI TTCGAA 1 cut(s) 45
SgeI CNNG 7 cut(s) 77, 120, 125, 131, 150, 154, 191
SmiMI CAYNNNNRTG 1 cut(s) 189
Sse9I AATT 2 cut(s) 47, 157
TaiI ACGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 45
TasI AATT 2 cut(s) 47, 157
TatI WGTACW 1 cut(s) 6
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.