Rh7DG452600

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000521
Physical Location & Seq
Forward (+)
64464478 .. 64464777
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG452600.1

Sequence Viewer

Length: 300 bp
ATGGATGTAGAAGAAGAAAGATGTGATCTTGAATCACTGTTGATTCCTAATTCTCAAGAACATGCTATTGAATCGAGAAAGGGATTCCTGAACAAGGATGAGATTTTTGAGGAAGTGAAGATGCAGCTGTTGTTAATATGGCCGCTCGTGTCATCAAATTTCTTGCTATTTGGTATGCAAGTTATTTCAGTCATGTATGTTGGTCATCTTGGAGAGCTATCACTTGCTGGTGCTTCAATGGCTACTTCATTCGCTTCAGTAACTGGTTTGAGCTTGATAGTAAGATGGCTTCTACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

99

Amino Acids

11.1

Weight (kDa)

4.57

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis pycom13g23330
rosa_chinensis RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 145
AciI CCGC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 140
AcsI RAATTY 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 3 cut(s) 32, 71, 237
AluBI AGCT 3 cut(s) 127, 217, 273
AluI AGCT 3 cut(s) 127, 217, 273
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 157
BarI GAAGNNNNNNTAC 1 cut(s) 273
BauI CACGAG 1 cut(s) 146
BbvI GCAGC 1 cut(s) 136
BccI CCATC 1 cut(s) 279
BisI GCNGC 2 cut(s) 125, 143
BlsI GCNGC 2 cut(s) 126, 144
BmsI GCATC 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 268
BseGI GGATG 2 cut(s) 10, 103
BseLI CCNNNNNNNGG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 268
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 94
BsnI GGCC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 1 cut(s) 143
BspANI GGCC 1 cut(s) 142
BsrBI CCGCTC 1 cut(s) 145
BsrI ACTGG 1 cut(s) 268
BssMI GATC 1 cut(s) 25
BssSI CACGAG 1 cut(s) 146
Bst2BI CACGAG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 39
BstENI CCTNNNNNAGG 1 cut(s) 92
BstF5I GGATG 2 cut(s) 10, 103
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 142
BtsCI GGATG 2 cut(s) 10, 103
BtsIMutI CAGTG 1 cut(s) 35
CaiI CAGNNNCTG 1 cut(s) 263
CviAII CATG 2 cut(s) 62, 193
CviJI RGCY 6 cut(s) 127, 142, 217, 242, 273, 289
CviKI_1 RGCY 6 cut(s) 127, 142, 217, 242, 273, 289
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 240
EcoNI CCTNNNNNAGG 1 cut(s) 92
FaeI CATG 2 cut(s) 65, 196
FaiI YATR 5 cut(s) 63, 139, 176, 194, 198
FatI CATG 2 cut(s) 61, 192
Fnu4HI GCNGC 2 cut(s) 125, 143
FokI GGATG 2 cut(s) 17, 110
Fsp4HI GCNGC 2 cut(s) 125, 143
GluI GCNGC 2 cut(s) 125, 143
HaeIII GGCC 1 cut(s) 142
Hin1II CATG 2 cut(s) 65, 196
HinfI GANTC 4 cut(s) 32, 43, 71, 84
Hpy188III TCNNGA 4 cut(s) 29, 56, 75, 88
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 124, 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
Hsp92II CATG 2 cut(s) 65, 196
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 3 cut(s) 101, 213, 249
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 259
MalI GATC 1 cut(s) 27
MbiI CCGCTC 1 cut(s) 145
MboI GATC 1 cut(s) 25
MboII GAAGA 3 cut(s) 23, 26, 130
MluCI AATT 2 cut(s) 49, 157
MnlI CCTC 1 cut(s) 103
MseI TTAA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 1 cut(s) 25
NlaIII CATG 2 cut(s) 65, 196
NspI RCATGY 1 cut(s) 65
PfeI GAWTC 4 cut(s) 32, 43, 71, 84
PkrI GCNGC 2 cut(s) 126, 144
PstNI CAGNNNCTG 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 127
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 2 cut(s) 125, 143
Sau3AI GATC 1 cut(s) 25
SetI ASST 3 cut(s) 129, 219, 275
SfaNI GCATC 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 2 cut(s) 49, 157
SsiI CCGC 1 cut(s) 143
TaaI ACNGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 74
TasI AATT 2 cut(s) 49, 157
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 4 cut(s) 32, 43, 71, 84
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 1 cut(s) 42
TseI GCWGC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 1 cut(s) 42
XagI CCTNNNNNAGG 1 cut(s) 92
XapI RAATTY 1 cut(s) 157
XceI RCATGY 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.