Rorug04G0042400

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000521
Physical Location & Seq
Reverse (-)
6650735 .. 6658012
7278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0042400.1

Sequence Viewer

Length: 840 bp
ATGAGTTACAGAAGTGTGCATCGTGCCTCCAAAGCATCTCTTTTAGATGGCCTTGAGGAAGGTGGTCTCAGGGCCTCCTCCTCATACTCCGATATAAATGAGAAGGACAATGACAAAGCTGTGCAAAGTTTGCAAGACAGAGTTGTTTTCCTAAAGAGAATAACAGGTGACATACATGAAGAGGTGGAAAGCCATAATCGTTTGCTTGACAGAATGGGAAATGACATGGATGCATCAAGGGGTATAATGTCTGGAACAATGGATCGGTTTAAGATGGTGTTTGAGAAAAAATCAAGCCGGCGAATGTGTGTACTTGTGGGCTATTTTGTGGCTTTCTTCTTAATCATATACTTTCTCTTCAGAGTTCTTCCCTCGAATTTCATCGAGGTTGAGAATTGTGGTGGTAGGTGTTGGGCAAAGGCTGGTGATGGTGGATCAGTGTGGCTGTTGGAATGGCGAGTGGAGGCGGTGTTGGCCAGACATGGCGGTGTGACTGTTTCCTCTCCATCTGCAGTGCTGCATCAGGGATTCAATGATAGACGCTGGGGTCTTCTTCGGTCTGATTGCAGCAGCAGCGGCGGCAAATTAGGTGGCAGTCTCATCCCACTTGGGTGTGCTGGTTTGTCTCACGATTTGGGGGTTGGGTTCTTCAGTGTGGGGCACAGCGCGATGGCGGCGAAGCTGCTTGGAGAACCCAAGATATGGGTCGCTTTCGGATCTGGATATGGGACCCGGGTGGGTCTTGGTTTTGGCAGAGAACCTAAGATATGTATTGGTTTTGGGCCTTGGCCAATTGCTGCTATTGGATCTGGGACCCAGGCTCTTGGATTTTGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

279

Amino Acids

30.22

Weight (kDa)

8.85

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis pycom13g23330
rosa_chinensis RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 546
AccB7I CCANNNNNTGG 1 cut(s) 702
AccII CGCG 1 cut(s) 668
AciI CCGC 5 cut(s) 467, 486, 576, 579, 674
AclWI GGATC 4 cut(s) 270, 442, 724, 814
AcoI YGGCCR 2 cut(s) 474, 788
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 2 cut(s) 343, 634
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 1 cut(s) 702
AgsI TTSAA 1 cut(s) 532
AjnI CCWGG 1 cut(s) 816
AleI CACNNNNGTG 1 cut(s) 610
AluBI AGCT 2 cut(s) 119, 682
AluI AGCT 2 cut(s) 119, 682
Alw26I GTCTC 3 cut(s) 71, 602, 630
AlwI GGATC 4 cut(s) 270, 442, 724, 814
Ama87I CYCGRG 1 cut(s) 732
AoxI GGCC 5 cut(s) 49, 72, 474, 782, 788
ApeKI GCWGC 6 cut(s) 517, 567, 570, 573, 682, 797
ApoI RAATTY 1 cut(s) 376
AspLEI GCGC 1 cut(s) 668
AspS9I GGNCC 4 cut(s) 72, 729, 782, 813
AsuC2I CCSGG 2 cut(s) 733, 734
AsuHPI GGTGA 2 cut(s) 179, 437
AvaI CYCGRG 1 cut(s) 732
AvaII GGWCC 2 cut(s) 729, 813
BaeGI GKGCMC 1 cut(s) 663
BalI TGGCCA 2 cut(s) 476, 790
BbsI GAAGAC 1 cut(s) 542
BbvI GCAGC 6 cut(s) 504, 579, 582, 585, 669, 784
BccI CCATC 5 cut(s) 41, 268, 422, 514, 664
BciT130I CCWGG 1 cut(s) 818
BcnI CCSGG 2 cut(s) 733, 734
BcoDI GTCTC 3 cut(s) 71, 602, 630
BfmI CTRYAG 1 cut(s) 510
BisI GCNGC 9 cut(s) 518, 568, 571, 574, 577, 580, 675, 683, 798
BlsI GCNGC 9 cut(s) 519, 569, 572, 575, 578, 581, 676, 684, 799
Bme1390I CCNGG 3 cut(s) 733, 734, 818
Bme18I GGWCC 2 cut(s) 729, 813
BmeT110I CYCGRG 1 cut(s) 732
BmgT120I GGNCC 4 cut(s) 72, 729, 782, 813
BmiI GGNNCC 4 cut(s) 730, 731, 814, 815
BmrFI CCNGG 3 cut(s) 733, 734, 818
BmsI GCATC 5 cut(s) 28, 44, 220, 242, 529
BpiI GAAGAC 1 cut(s) 542
BpuEI CTTGAG 1 cut(s) 74
BpuMI CCSGG 2 cut(s) 733, 734
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 3 cut(s) 732, 785, 816
BsaXI ACNNNNNCTCC 2 cut(s) 455, 485
Bsc4I CCNNNNNNNGG 1 cut(s) 702
Bse118I RCCGGY 1 cut(s) 297
BseBI CCWGG 1 cut(s) 818
BseDI CCNNGG 3 cut(s) 732, 785, 816
BseGI GGATG 2 cut(s) 235, 600
BseLI CCNNNNNNNGG 1 cut(s) 702
BseMII CTCAG 1 cut(s) 82
BseRI GAGGAG 2 cut(s) 67, 70
BseSI GKGCMC 1 cut(s) 663
BseXI GCAGC 6 cut(s) 504, 579, 582, 585, 669, 784
BseYI CCCAGC 1 cut(s) 543
Bsh1236I CGCG 1 cut(s) 668
BshFI GGCC 5 cut(s) 51, 74, 476, 784, 790
BsiHKCI CYCGRG 1 cut(s) 732
BsiSI CCGG 2 cut(s) 298, 733
BslFI GGGAC 2 cut(s) 742, 826
BslI CCNNNNNNNGG 1 cut(s) 702
BsmAI GTCTC 3 cut(s) 71, 602, 630
BsmFI GGGAC 2 cut(s) 742, 826
BsnI GGCC 5 cut(s) 51, 74, 476, 784, 790
Bso31I GGTCTC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 732
Bsp1286I GDGCHC 1 cut(s) 663
Bsp143I GATC 4 cut(s) 262, 434, 716, 806
BspACI CCGC 5 cut(s) 467, 486, 576, 579, 674
BspANI GGCC 5 cut(s) 51, 74, 476, 784, 790
BspCNI CTCAG 1 cut(s) 81
BspFNI CGCG 1 cut(s) 668
BspLI GGNNCC 4 cut(s) 730, 731, 814, 815
BspMAI CTGCAG 1 cut(s) 514
BspPI GGATC 4 cut(s) 270, 442, 724, 814
BspTNI GGTCTC 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 297
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 3 cut(s) 732, 785, 816
BssMI GATC 4 cut(s) 262, 434, 716, 806
BssT1I CCWWGG 1 cut(s) 785
Bst2UI CCWGG 1 cut(s) 818
Bst4CI ACNGT 1 cut(s) 496
Bst6I CTCTTC 2 cut(s) 174, 362
BstAPI GCANNNNNTGC 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 68, 762
BstF5I GGATG 2 cut(s) 235, 600
BstFNI CGCG 1 cut(s) 668
BstHHI GCGC 1 cut(s) 668
BstKTI GATC 4 cut(s) 265, 437, 719, 809
BstMAI GTCTC 3 cut(s) 71, 602, 630
BstMBI GATC 4 cut(s) 262, 434, 716, 806
BstMWI GCNNNNNNNGC 7 cut(s) 32, 130, 473, 573, 576, 579, 674
BstNI CCWGG 1 cut(s) 818
BstSCI CCNGG 3 cut(s) 731, 732, 816
BstSFI CTRYAG 1 cut(s) 510
BstSLI GKGCMC 1 cut(s) 663
BstUI CGCG 1 cut(s) 668
BstV1I GCAGC 6 cut(s) 504, 579, 582, 585, 669, 784
BstV2I GAAGAC 1 cut(s) 542
BstX2I RGATCY 2 cut(s) 716, 806
BstXI CCANNNNNNTGG 1 cut(s) 824
BstYI RGATCY 2 cut(s) 716, 806
BsuRI GGCC 5 cut(s) 51, 74, 476, 784, 790
BtgZI GCGATG 1 cut(s) 683
BtsCI GGATG 2 cut(s) 235, 600
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 3 cut(s) 444, 519, 658
Cac8I GCNNGC 1 cut(s) 299
CfoI GCGC 1 cut(s) 668
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 4 cut(s) 72, 729, 782, 813
Cfr9I CCCGGG 1 cut(s) 732
CseI GACGC 1 cut(s) 549
Csp6I GTAC 1 cut(s) 311
CspCI CAANNNNNGTGG 2 cut(s) 571, 606
CviAII CATG 3 cut(s) 176, 226, 482
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 2 cut(s) 68, 762
DpnI GATC 4 cut(s) 264, 436, 718, 808
DpnII GATC 4 cut(s) 262, 434, 716, 806
DrdI GACNNNNNNGTC 1 cut(s) 546
DseDI GACNNNNNNGTC 1 cut(s) 546
EaeI YGGCCR 2 cut(s) 474, 788
Eam1104I CTCTTC 2 cut(s) 174, 362
EarI CTCTTC 2 cut(s) 174, 362
Eco130I CCWWGG 1 cut(s) 785
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 2 cut(s) 729, 813
Eco57I CTGAAG 2 cut(s) 343, 634
Eco88I CYCGRG 1 cut(s) 732
EcoO109I RGGNCCY 3 cut(s) 72, 729, 813
EcoRII CCWGG 1 cut(s) 816
EcoT14I CCWWGG 1 cut(s) 785
EcoT22I ATGCAT 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 785
FaeI CATG 3 cut(s) 179, 229, 485
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FaqI GGGAC 2 cut(s) 742, 826
FatI CATG 3 cut(s) 175, 225, 481
Fnu4HI GCNGC 9 cut(s) 518, 568, 571, 574, 577, 580, 675, 683, 798
FokI GGATG 2 cut(s) 242, 587
Fsp4HI GCNGC 9 cut(s) 518, 568, 571, 574, 577, 580, 675, 683, 798
GlaI GCGC 1 cut(s) 667
GluI GCNGC 9 cut(s) 518, 568, 571, 574, 577, 580, 675, 683, 798
GsaI CCCAGC 1 cut(s) 547
HaeIII GGCC 5 cut(s) 51, 74, 476, 784, 790
HapII CCGG 2 cut(s) 298, 733
HgaI GACGC 1 cut(s) 549
HhaI GCGC 1 cut(s) 668
Hin1II CATG 3 cut(s) 179, 229, 485
Hin6I GCGC 1 cut(s) 666
HinP1I GCGC 1 cut(s) 666
HinfI GANTC 1 cut(s) 528
HpaII CCGG 2 cut(s) 298, 733
HphI GGTGA 2 cut(s) 179, 437
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 4 cut(s) 91, 362, 562, 716
Hpy188III TCNNGA 3 cut(s) 252, 629, 720
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 2 cut(s) 53, 97
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4V TGCA 7 cut(s) 19, 124, 133, 233, 512, 520, 567
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 130, 473, 573, 576, 579, 674
HpyF3I CTNAG 2 cut(s) 68, 762
Hsp92II CATG 3 cut(s) 179, 229, 485
HspAI GCGC 1 cut(s) 666
KflI GGGWCCC 2 cut(s) 729, 813
KroI GCCGGC 1 cut(s) 297
KroNI GCCGGC 1 cut(s) 299
Kzo9I GATC 4 cut(s) 262, 434, 716, 806
Lsp1109I GCAGC 6 cut(s) 504, 579, 582, 585, 669, 784
LweI GCATC 5 cut(s) 28, 44, 220, 242, 529
MaeIII GTNAC 3 cut(s) 5, 167, 490
MalI GATC 4 cut(s) 264, 436, 718, 808
MboI GATC 4 cut(s) 262, 434, 716, 806
MboII GAAGA 7 cut(s) 191, 328, 349, 359, 542, 545, 640
MfeI CAATTG 1 cut(s) 792
MflI RGATCY 2 cut(s) 716, 806
MhlI GDGCHC 1 cut(s) 663
MlsI TGGCCA 2 cut(s) 476, 790
MluCI AATT 4 cut(s) 376, 394, 584, 792
MluNI TGGCCA 2 cut(s) 476, 790
MmeI TCCRAC 1 cut(s) 429
Mox20I TGGCCA 2 cut(s) 476, 790
Mph1103I ATGCAT 1 cut(s) 235
MroNI GCCGGC 1 cut(s) 297
MscI TGGCCA 2 cut(s) 476, 790
MseI TTAA 3 cut(s) 270, 341, 838
MslI CAYNNNNRTG 2 cut(s) 486, 610
Msp20I TGGCCA 2 cut(s) 476, 790
MspA1I CMGCKG 1 cut(s) 576
MspI CCGG 2 cut(s) 298, 733
MspR9I CCNGG 3 cut(s) 733, 734, 818
MunI CAATTG 1 cut(s) 792
MvaI CCWGG 1 cut(s) 818
MvnI CGCG 1 cut(s) 668
MwoI GCNNNNNNNGC 7 cut(s) 32, 130, 473, 573, 576, 579, 674
NaeI GCCGGC 1 cut(s) 299
NciI CCSGG 2 cut(s) 733, 734
NdeII GATC 4 cut(s) 262, 434, 716, 806
NgoMIV GCCGGC 1 cut(s) 297
NlaIII CATG 3 cut(s) 179, 229, 485
NlaIV GGNNCC 4 cut(s) 730, 731, 814, 815
NmuCI GTSAC 2 cut(s) 167, 490
NsiI ATGCAT 1 cut(s) 235
OliI CACNNNNGTG 1 cut(s) 610
PdiI GCCGGC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 528
PflMI CCANNNNNTGG 1 cut(s) 702
PkrI GCNGC 9 cut(s) 519, 569, 572, 575, 578, 581, 676, 684, 799
PpuMI RGGWCCY 2 cut(s) 729, 813
Psp5II RGGWCCY 2 cut(s) 729, 813
Psp6I CCWGG 1 cut(s) 816
PspFI CCCAGC 1 cut(s) 543
PspGI CCWGG 1 cut(s) 816
PspN4I GGNNCC 4 cut(s) 730, 731, 814, 815
PspPI GGNCC 4 cut(s) 72, 729, 782, 813
PspPPI RGGWCCY 2 cut(s) 729, 813
PstI CTGCAG 1 cut(s) 514
PsuI RGATCY 2 cut(s) 716, 806
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
RseI CAYNNNNRTG 2 cut(s) 486, 610
SaqAI TTAA 3 cut(s) 270, 341, 838
SatI GCNGC 9 cut(s) 518, 568, 571, 574, 577, 580, 675, 683, 798
Sau3AI GATC 4 cut(s) 262, 434, 716, 806
Sau96I GGNCC 4 cut(s) 72, 729, 782, 813
ScrFI CCNGG 3 cut(s) 733, 734, 818
SduI GDGCHC 1 cut(s) 663
SetI ASST 9 cut(s) 64, 121, 169, 186, 390, 410, 592, 684, 763
SfaNI GCATC 5 cut(s) 28, 44, 220, 242, 529
SfcI CTRYAG 1 cut(s) 510
SinI GGWCC 2 cut(s) 729, 813
SmaI CCCGGG 1 cut(s) 734
SmiMI CAYNNNNRTG 2 cut(s) 486, 610
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 4 cut(s) 376, 394, 584, 792
SsiI CCGC 5 cut(s) 467, 486, 576, 579, 674
StyD4I CCNGG 3 cut(s) 731, 732, 816
StyI CCWWGG 1 cut(s) 785
TaaI ACNGT 1 cut(s) 496
TaqI TCGA 2 cut(s) 374, 384
TaqII GACCGA 1 cut(s) 546
TasI AATT 4 cut(s) 376, 394, 584, 792
TatI WGTACW 1 cut(s) 310
TauI GCSGC 3 cut(s) 579, 582, 677
TfiI GAWTC 1 cut(s) 528
Tru1I TTAA 3 cut(s) 270, 341, 838
Tru9I TTAA 3 cut(s) 270, 341, 838
TscAI CASTG 3 cut(s) 444, 519, 658
TseFI GTSAC 2 cut(s) 167, 490
TseI GCWGC 6 cut(s) 517, 567, 570, 573, 682, 797
Tsp45I GTSAC 2 cut(s) 167, 490
TspDTI ATGAA 2 cut(s) 192, 370
TspMI CCCGGG 1 cut(s) 732
TspRI CASTG 3 cut(s) 444, 519, 658
Van91I CCANNNNNTGG 1 cut(s) 702
VpaK11BI GGWCC 2 cut(s) 729, 813
XapI RAATTY 1 cut(s) 376
XmaI CCCGGG 1 cut(s) 732
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.