Rh4BG111800

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000521
Physical Location & Seq
Reverse (-)
18861704 .. 18864868
3165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG111800.1

Sequence Viewer

Length: 318 bp
ATGCAGGCTATTTCAGTCATGTCCTTTACAAGAATGCCCCCGGCTGGTATCATAAGAGGAAGTGGACAGCAGAAGATCGGAGCATATGTTAACCTGGGAGCTTATTATCTTATGGGCATTCCTACTTCAATATTATTAGCTTTTGTGTTTCACATTGGAGGAAAGGGTCTTTGGATGGGAATCATCGTTGCACTATTTGTGCAAGCACTATTTCTGGGAATCATAATCTTATTCACAGATTGGGAGAAAGAAGTGAAGAAAGCTTCTGATAGAGTGTACAATACAATGAGCGTGGCTGATGCAACATCTATAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

105

Amino Acids

11.45

Weight (kDa)

9.45

Isoelectric Point (pI)

29.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis pycom13g23330
rosa_chinensis RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 129
AjnI CCWGG 1 cut(s) 93
AjuI GAANNNNNNNTTGG 2 cut(s) 154, 186
AluBI AGCT 3 cut(s) 101, 140, 263
AluI AGCT 3 cut(s) 101, 140, 263
AsuC2I CCSGG 1 cut(s) 41
BccI CCATC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 95
BcnI CCSGG 1 cut(s) 41
Bme1390I CCNGG 2 cut(s) 41, 95
BmrFI CCNGG 2 cut(s) 41, 95
BmsI GCATC 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 41
BsaBI GATNNNNATC 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 39, 94
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse8I GATNNNNATC 1 cut(s) 179
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 2 cut(s) 39, 94
BseGI GGATG 1 cut(s) 180
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 44
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 44
BsmI GAATGC 2 cut(s) 39, 117
Bsp1407I TGTACA 1 cut(s) 276
Bsp143I GATC 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 39, 94
BssMI GATC 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 95
BstAUI TGTACA 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 6, 204
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 1 cut(s) 78
BstMBI GATC 1 cut(s) 75
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 2 cut(s) 39, 93
BtsCI GGATG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 6, 204
Csp6I GTAC 1 cut(s) 277
CspCI CAANNNNNGTGG 2 cut(s) 273, 308
CviAII CATG 1 cut(s) 19
CviJI RGCY 6 cut(s) 8, 44, 101, 140, 263, 296
CviKI_1 RGCY 6 cut(s) 8, 44, 101, 140, 263, 296
CviQI GTAC 1 cut(s) 277
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 22
FaiI YATR 7 cut(s) 20, 53, 85, 87, 113, 224, 311
FatI CATG 1 cut(s) 18
FauNDI CATATG 1 cut(s) 85
FokI GGATG 1 cut(s) 187
HapII CCGG 1 cut(s) 41
Hin1II CATG 1 cut(s) 22
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 2 cut(s) 180, 219
HpaI GTTAAC 1 cut(s) 91
HpaII CCGG 1 cut(s) 41
Hpy166II GTNNAC 3 cut(s) 65, 91, 277
Hpy188I TCNGA 2 cut(s) 80, 268
Hpy8I GTNNAC 3 cut(s) 65, 91, 277
HpyCH4V TGCA 4 cut(s) 4, 191, 202, 302
Hsp92II CATG 1 cut(s) 22
KspAI GTTAAC 1 cut(s) 91
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 2 cut(s) 80, 98
LpnPI CCDG 5 cut(s) 30, 54, 80, 107, 200
LweI GCATC 1 cut(s) 289
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 2 cut(s) 85, 268
MnlI CCTC 2 cut(s) 50, 152
MseI TTAA 1 cut(s) 90
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 2 cut(s) 41, 95
Mva1269I GAATGC 2 cut(s) 39, 117
MvaI CCWGG 1 cut(s) 95
NciI CCSGG 1 cut(s) 41
NdeI CATATG 1 cut(s) 85
NdeII GATC 1 cut(s) 75
NlaIII CATG 1 cut(s) 22
PctI GAATGC 2 cut(s) 39, 117
PfeI GAWTC 2 cut(s) 180, 219
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SaqAI TTAA 1 cut(s) 90
Sau3AI GATC 1 cut(s) 75
ScrFI CCNGG 2 cut(s) 41, 95
SetI ASST 4 cut(s) 96, 103, 142, 265
SfaNI GCATC 1 cut(s) 289
SspI AATATT 1 cut(s) 132
StyD4I CCNGG 2 cut(s) 39, 93
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 2 cut(s) 180, 219
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.