Rorug04G0042500

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000521
Physical Location & Seq
Reverse (-)
6659040 .. 6661856
2817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0042500.1

Sequence Viewer

Length: 897 bp
ATGTACGCCAGAGAAGAACTGCCTGGAGAAGGGGTTGAAGTGATTGCGGCTGATGCTCCCTCGGAGTACCAGATGGCTCCTAGGGCGGTGGAGCACAAGGACAAGGCGGCTGCTGGTTCAGGAGAGGGGACGGGTGAGCCAAAGAAGAGAGGGAGAGGGAGGCCTCCACAGAAGAATGTGGGGGAAGGGCAGTCCTCCTCAGCCAAGGGGAGAAAGGAGAAGGGCCAAGGAAGCGGCGGTGGGGGTGGAGGAGGTGGCAGTGGCAGTGGGGGCGGAGGAGGAGGAGGAGGAGGAGGAGGCGGTGGGGGCGGGGGCGGCGGCCAGGGCAATCCCGGTGCAGCTTATAATGGAAGAAGCTTCACGCCCCACCTCATCTCTGTCAATGTTGGGGAGAATGTCTGCGGGAGCGTTATGAGATATTTCCATGAAAGACCACGAGTAATCTGCGTGATTTCTGCAAGTGGAGTAATCTCTAGTGTTAATCTGCGCCAACAGGATGACGAGGCCATCACATATGAGGGACGTTTCGAAATCCTGAGCTTGTCTGGATGCCTTATGCCCCATAACGGAGCCTGGCGTGGTGCAATGAGTGTCTCTCTGGCAGGCGCCAACGGTCTAATTTTAGGGGGAGGCATTAATGGAATTCTGAGAGCTGCCACTCCTGTGCAAGTTGTGGTAGGTAGTTTCCTAGCTGGTGAACCGAAAGGAAAGGGTAAGAAGAAGGCGGATGCTGAACCACCTGATACTGAGCCTCCACCTCCGCCTCCGCCACCACCATCGCCTCCGCCGCCAGCACCAGAACCGCCACCTGCACCAGCAGCAGCACCACCACCACCACAAGAGCCCATGGGATTCTGGGGGATTTACGATAATAGCTGGCCGAGAATGGAATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

298

Amino Acids

29.89

Weight (kDa)

6.92

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 122 - 229 1.2e-19 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis pycom13g23330
rosa_chinensis RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AarI CACCTGC 1 cut(s) 817
Acc36I ACCTGC 1 cut(s) 817
AccB1I GGYRCC 1 cut(s) 605
AcoI YGGCCR 2 cut(s) 319, 878
AcsI RAATTY 1 cut(s) 642
AcyI GRCGYC 1 cut(s) 606
AfaI GTAC 2 cut(s) 5, 68
AfiI CCNNNNNNNGG 2 cut(s) 29, 566
AgsI TTSAA 1 cut(s) 38
AjnI CCWGG 3 cut(s) 22, 321, 572
AleI CACNNNNGTG 1 cut(s) 662
AluBI AGCT 6 cut(s) 341, 357, 540, 653, 692, 876
AluI AGCT 6 cut(s) 341, 357, 540, 653, 692, 876
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 598
AoxI GGCC 5 cut(s) 161, 223, 319, 504, 878
ApeKI GCWGC 5 cut(s) 110, 338, 653, 818, 821
ApoI RAATTY 1 cut(s) 642
AseI ATTAAT 1 cut(s) 636
AspA2I CCTAGG 1 cut(s) 80
AspLEI GCGC 2 cut(s) 489, 608
AspS9I GGNCC 1 cut(s) 223
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 2 cut(s) 146, 707
AsuII TTCGAA 1 cut(s) 528
AvrII CCTAGG 1 cut(s) 80
BanI GGYRCC 1 cut(s) 605
BanII GRGCYC 1 cut(s) 846
BauI CACGAG 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 199
BbvI GCAGC 5 cut(s) 97, 350, 640, 830, 833
BccI CCATC 3 cut(s) 67, 515, 784
BcgI CGANNNNNNTGC 2 cut(s) 426, 460
BciT130I CCWGG 3 cut(s) 24, 323, 574
BcnI CCSGG 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 598
BfaI CTAG 3 cut(s) 81, 474, 689
BfoI RGCGCY 1 cut(s) 609
BfuAI ACCTGC 1 cut(s) 817
BlnI CCTAGG 1 cut(s) 80
Bme1390I CCNGG 4 cut(s) 24, 323, 333, 574
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 3 cut(s) 78, 571, 607
BmrFI CCNGG 4 cut(s) 24, 323, 333, 574
BmsI GCATC 3 cut(s) 43, 539, 718
BplI GAGNNNNNCTC 2 cut(s) 580, 612
BpmI CTGGAG 1 cut(s) 45
Bpu10I CCTNAGC 2 cut(s) 199, 536
Bpu14I TTCGAA 1 cut(s) 528
BpuMI CCSGG 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 606
BsaJI CCNNGG 6 cut(s) 60, 80, 204, 226, 322, 846
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 736, 766
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 566
Bse3DI GCAATG 1 cut(s) 591
BseBI CCWGG 3 cut(s) 24, 323, 574
BseDI CCNNGG 6 cut(s) 60, 80, 204, 226, 322, 846
BseGI GGATG 3 cut(s) 502, 554, 733
BseLI CCNNNNNNNGG 2 cut(s) 29, 566
BseMI GCAATG 1 cut(s) 591
BseMII CTCAG 4 cut(s) 213, 527, 638, 738
BseRI GAGGAG 9 cut(s) 187, 264, 291, 294, 297, 300, 303, 306, 309
BseXI GCAGC 5 cut(s) 97, 350, 640, 830, 833
BsgI GTGCAG 2 cut(s) 357, 795
BshFI GGCC 5 cut(s) 163, 225, 321, 506, 880
BshNI GGYRCC 1 cut(s) 605
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 333
BslFI GGGAC 2 cut(s) 142, 534
BslI CCNNNNNNNGG 2 cut(s) 29, 566
BsmAI GTCTC 1 cut(s) 598
BsmFI GGGAC 2 cut(s) 142, 534
BsnI GGCC 5 cut(s) 163, 225, 321, 506, 880
Bsp119I TTCGAA 1 cut(s) 528
Bsp1286I GDGCHC 2 cut(s) 96, 846
Bsp19I CCATGG 1 cut(s) 846
BspANI GGCC 5 cut(s) 163, 225, 321, 506, 880
BspCNI CTCAG 4 cut(s) 212, 528, 639, 739
BspLI GGNNCC 3 cut(s) 78, 571, 607
BspMI ACCTGC 1 cut(s) 817
BspT104I TTCGAA 1 cut(s) 528
BspT107I GGYRCC 1 cut(s) 605
BsrDI GCAATG 1 cut(s) 591
BssECI CCNNGG 6 cut(s) 60, 80, 204, 226, 322, 846
BssNI GRCGYC 1 cut(s) 606
BssSI CACGAG 1 cut(s) 435
BssT1I CCWWGG 4 cut(s) 80, 204, 226, 846
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 3 cut(s) 24, 323, 574
Bst4CI ACNGT 1 cut(s) 614
Bst6I CTCTTC 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 606
BstBI TTCGAA 1 cut(s) 528
BstC8I GCNNGC 3 cut(s) 604, 792, 878
BstDEI CTNAG 4 cut(s) 199, 536, 647, 747
BstDSI CCRYGG 1 cut(s) 846
BstENI CCTNNNNNAGG 1 cut(s) 27
BstF5I GGATG 3 cut(s) 502, 554, 733
BstH2I RGCGCY 1 cut(s) 609
BstHHI GCGC 2 cut(s) 489, 608
BstMAI GTCTC 1 cut(s) 598
BstMWI GCNNNNNNNGC 9 cut(s) 53, 83, 231, 270, 306, 315, 324, 787, 818
BstNI CCWGG 3 cut(s) 24, 323, 574
BstSCI CCNGG 4 cut(s) 22, 321, 331, 572
BstV1I GCAGC 5 cut(s) 97, 350, 640, 830, 833
BsuRI GGCC 5 cut(s) 163, 225, 321, 506, 880
BtgI CCRYGG 1 cut(s) 846
BtgZI GCGATG 1 cut(s) 762
BtsCI GGATG 3 cut(s) 502, 554, 733
BtsI GCAGTG 2 cut(s) 265, 271
BtsIMutI CAGTG 2 cut(s) 265, 271
BveI ACCTGC 1 cut(s) 817
Cac8I GCNNGC 3 cut(s) 604, 792, 878
CfoI GCGC 2 cut(s) 489, 608
Cfr13I GGNCC 1 cut(s) 223
Csp6I GTAC 2 cut(s) 4, 67
CviAII CATG 2 cut(s) 425, 847
CviQI GTAC 2 cut(s) 4, 67
DdeI CTNAG 4 cut(s) 199, 536, 647, 747
DinI GGCGCC 1 cut(s) 607
EaeI YGGCCR 2 cut(s) 319, 878
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
EciI GGCGGA 5 cut(s) 288, 740, 750, 756, 774
Eco130I CCWWGG 4 cut(s) 80, 204, 226, 846
Eco147I AGGCCT 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 846
EcoNI CCTNNNNNAGG 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 642
EcoRII CCWGG 3 cut(s) 22, 321, 572
EcoT14I CCWWGG 4 cut(s) 80, 204, 226, 846
EcoT38I GRGCYC 1 cut(s) 846
EgeI GGCGCC 1 cut(s) 607
EheI GGCGCC 1 cut(s) 607
ErhI CCWWGG 4 cut(s) 80, 204, 226, 846
FaeI CATG 2 cut(s) 428, 850
FaiI YATR 8 cut(s) 345, 413, 426, 514, 516, 557, 564, 848
FaqI GGGAC 2 cut(s) 142, 534
FatI CATG 2 cut(s) 424, 846
FauI CCCGC 2 cut(s) 302, 395
FauNDI CATATG 1 cut(s) 514
FokI GGATG 3 cut(s) 509, 561, 740
FriOI GRGCYC 1 cut(s) 846
FspBI CTAG 3 cut(s) 81, 474, 689
GlaI GCGC 2 cut(s) 488, 607
GsuI CTGGAG 1 cut(s) 45
HaeII RGCGCY 1 cut(s) 609
HaeIII GGCC 5 cut(s) 163, 225, 321, 506, 880
HapII CCGG 1 cut(s) 333
HhaI GCGC 2 cut(s) 489, 608
Hin1I GRCGYC 1 cut(s) 606
Hin1II CATG 2 cut(s) 428, 850
Hin6I GCGC 2 cut(s) 487, 606
HinP1I GCGC 2 cut(s) 487, 606
HindIII AAGCTT 1 cut(s) 355
HinfI GANTC 1 cut(s) 852
HpaII CCGG 1 cut(s) 333
HphI GGTGA 2 cut(s) 146, 707
Hpy166II GTNNAC 1 cut(s) 698
Hpy188I TCNGA 2 cut(s) 64, 648
Hpy188III TCNNGA 3 cut(s) 120, 535, 546
Hpy8I GTNNAC 1 cut(s) 698
HpyAV CCTTC 4 cut(s) 23, 179, 214, 715
HpyCH4III ACNGT 1 cut(s) 614
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 5 cut(s) 338, 458, 584, 667, 812
HpyF10VI GCNNNNNNNGC 9 cut(s) 53, 83, 231, 270, 306, 315, 324, 787, 818
HpyF3I CTNAG 4 cut(s) 199, 536, 647, 747
HpySE526I ACGT 1 cut(s) 523
Hsp92I GRCGYC 1 cut(s) 606
Hsp92II CATG 2 cut(s) 428, 850
HspAI GCGC 2 cut(s) 487, 606
KasI GGCGCC 1 cut(s) 605
LmnI GCTCC 5 cut(s) 61, 82, 91, 405, 569
Lsp1109I GCAGC 5 cut(s) 97, 350, 640, 830, 833
LweI GCATC 3 cut(s) 43, 539, 718
MaeI CTAG 3 cut(s) 81, 474, 689
MaeII ACGT 1 cut(s) 523
MboII GAAGA 5 cut(s) 26, 157, 184, 363, 730
MhlI GDGCHC 2 cut(s) 96, 846
MluCI AATT 2 cut(s) 618, 642
Mly113I GGCGCC 1 cut(s) 606
MseI TTAA 2 cut(s) 480, 636
MslI CAYNNNNRTG 1 cut(s) 662
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 4 cut(s) 24, 323, 333, 574
MvaI CCWGG 3 cut(s) 24, 323, 574
MwoI GCNNNNNNNGC 9 cut(s) 53, 83, 231, 270, 306, 315, 324, 787, 818
NarI GGCGCC 1 cut(s) 606
NciI CCSGG 1 cut(s) 333
NcoI CCATGG 1 cut(s) 846
NdeI CATATG 1 cut(s) 514
NlaIII CATG 2 cut(s) 428, 850
NlaIV GGNNCC 3 cut(s) 78, 571, 607
NspV TTCGAA 1 cut(s) 528
OliI CACNNNNGTG 1 cut(s) 662
PaqCI CACCTGC 1 cut(s) 817
PceI AGGCCT 1 cut(s) 163
PfeI GAWTC 1 cut(s) 852
PluTI GGCGCC 1 cut(s) 609
PshBI ATTAAT 1 cut(s) 636
PsiI TTATAA 1 cut(s) 345
Psp6I CCWGG 3 cut(s) 22, 321, 572
PspGI CCWGG 3 cut(s) 22, 321, 572
PspN4I GGNNCC 3 cut(s) 78, 571, 607
PspPI GGNCC 1 cut(s) 223
RsaI GTAC 2 cut(s) 5, 68
RsaNI GTAC 2 cut(s) 4, 67
RseI CAYNNNNRTG 1 cut(s) 662
SaqAI TTAA 2 cut(s) 480, 636
Sau96I GGNCC 1 cut(s) 223
ScrFI CCNGG 4 cut(s) 24, 323, 333, 574
SduI GDGCHC 2 cut(s) 96, 846
SfaNI GCATC 3 cut(s) 43, 539, 718
SfoI GGCGCC 1 cut(s) 607
SfuI TTCGAA 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 662
Sse9I AATT 2 cut(s) 618, 642
SseBI AGGCCT 1 cut(s) 163
SspDI GGCGCC 1 cut(s) 605
SspMI CTAG 3 cut(s) 81, 474, 689
StuI AGGCCT 1 cut(s) 163
StyD4I CCNGG 4 cut(s) 22, 321, 331, 572
StyI CCWWGG 4 cut(s) 80, 204, 226, 846
TaaI ACNGT 1 cut(s) 614
TaiI ACGT 1 cut(s) 526
TaqI TCGA 1 cut(s) 528
TasI AATT 2 cut(s) 618, 642
TauI GCSGC 6 cut(s) 50, 110, 237, 318, 321, 790
TfiI GAWTC 1 cut(s) 852
Tru1I TTAA 2 cut(s) 480, 636
Tru9I TTAA 2 cut(s) 480, 636
TscAI CASTG 2 cut(s) 265, 271
TseI GCWGC 5 cut(s) 110, 338, 653, 818, 821
TspDTI ATGAA 1 cut(s) 441
TspGWI ACGGA 1 cut(s) 582
TspRI CASTG 2 cut(s) 265, 271
VspI ATTAAT 1 cut(s) 636
XagI CCTNNNNNAGG 1 cut(s) 27
XapI RAATTY 1 cut(s) 642
XmaJI CCTAGG 1 cut(s) 80
XspI CTAG 3 cut(s) 81, 474, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.