Rorug04G0042900

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000521
Physical Location & Seq
Reverse (-)
6708855 .. 6716989
8135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0042900.1

Sequence Viewer

Length: 870 bp
ATGAGGGGTGATTCACATAAATTTGCAGACTCAGACAAGCTTGCTAGAAGATCCCTCGAAAGTAATCATGATTCTCCAATTGCAAATCAGATTATCTCCACCCAAGCATGTATCGAAGAGGTTGTCAAGGGTATCTGTGGGGGGAAAAGCATAAAGCGTCCCATATGCTTGGATTGTGCAGATGATCCTGTACGTACACCATGTGCACATGAGATGTGCAGGGAGTGTCTCCTCTCAAGTTGGCCGAGACCAAGTTTTGGTCAATGCCAAGTATGTTTTAATTGGATTGGGAAAACTGACCTCATAACTTGCAAATCAGAAAACCGTTGCCAGTCAGATATTAAGGAAATTTTGAAGGAGTCTTCAAAGGTTTCAAAGCTCTTGGAGTGCTTGGAACATATTGTTGATTCAGGTTCCGATGAAAAGAGCATTGTTTTCAGCCAGTGGGCTTCATTTTTGGATCTCTTGGAGACCTCTATGAAGAGAAGAGGAATTGGCTGTGTAAGGTTTGATGGAAAGCTGCCGGACATGCATAGGGACAGGGCATTGGCTGAGTTCAGTAAGACCACGGACAAAATGGTATTGTTGATGTCTCTGAAAACTGGTGGTGACGGTCTAGATCTAACTGCAGCATCTAATGTCTTTCTAATGGATCCACCCTGGAATCCAGATGTTGAGGAGGAAGCAATAATGAGAATTCTTCGTAATAGACGGAAGCGAACTGCTTTTATAAGATTTATTGTCAAGGACACGGTGGAGGAACGACTGCAGCAAGTTCAGGCGAGGAAGCAGCGGATGATTGCCGGAGCTCTCACTGATAAGGAAGTTCAATCTGCCAGGATTGAGGAACTCAAAATTCTTTTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

289

Amino Acids

32.73

Weight (kDa)

7.92

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4 PF00097 54 - 79 4.6e-06 Zinc finger, C3HC4 type (RING finger)
Helicase_C PF00271 128 - 236 2.5e-18 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis pycom13g23330
rosa_chinensis RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 731
AccB7I CCANNNNNTGG 1 cut(s) 257
AciI CCGC 1 cut(s) 793
AclWI GGATC 5 cut(s) 45, 179, 468, 647, 660
AcoI YGGCCR 1 cut(s) 242
AcsI RAATTY 4 cut(s) 20, 348, 696, 855
AdeI CACNNNGTG 1 cut(s) 203
AfaI GTAC 2 cut(s) 192, 196
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 4 cut(s) 355, 366, 375, 830
AjnI CCWGG 2 cut(s) 659, 836
AluBI AGCT 4 cut(s) 40, 379, 520, 809
AluI AGCT 4 cut(s) 40, 379, 520, 809
Alw21I GWGCWC 2 cut(s) 208, 811
Alw26I GTCTC 4 cut(s) 233, 241, 464, 597
Alw44I GTGCAC 1 cut(s) 204
AlwI GGATC 5 cut(s) 45, 179, 468, 647, 660
AoxI GGCC 1 cut(s) 242
ApaLI GTGCAC 1 cut(s) 204
ApeKI GCWGC 4 cut(s) 520, 629, 769, 790
ApoI RAATTY 4 cut(s) 20, 348, 696, 855
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
AsuHPI GGTGA 2 cut(s) 20, 620
BaeGI GKGCMC 1 cut(s) 208
BamHI GGATCC 1 cut(s) 652
BanII GRGCYC 1 cut(s) 811
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 2 cut(s) 208, 811
BbvI GCAGC 4 cut(s) 507, 641, 781, 802
BccI CCATC 1 cut(s) 506
BciT130I CCWGG 2 cut(s) 661, 838
BcoDI GTCTC 4 cut(s) 233, 241, 464, 597
BfaI CTAG 2 cut(s) 45, 617
BfmI CTRYAG 2 cut(s) 627, 767
BglII AGATCT 1 cut(s) 619
BisI GCNGC 4 cut(s) 521, 630, 770, 791
BlsI GCNGC 4 cut(s) 522, 631, 771, 792
Bme1390I CCNGG 2 cut(s) 661, 838
BmiI GGNNCC 2 cut(s) 415, 654
BmrFI CCNGG 2 cut(s) 661, 838
BmsI GCATC 1 cut(s) 641
BpiI GAAGAC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 220
BsaAI YACGTR 1 cut(s) 194
BsaI GGTCTC 2 cut(s) 241, 464
BsaJI CCNNGG 2 cut(s) 567, 659
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 3 cut(s) 331, 442, 607
BseBI CCWGG 2 cut(s) 661, 838
BseDI CCNNGG 2 cut(s) 567, 659
BseGI GGATG 1 cut(s) 801
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 2 cut(s) 45, 543
BseNI ACTGG 3 cut(s) 331, 442, 607
BseRI GAGGAG 2 cut(s) 221, 692
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 4 cut(s) 507, 641, 781, 802
BsgI GTGCAG 2 cut(s) 198, 238
BshFI GGCC 1 cut(s) 244
BsiHKAI GWGCWC 2 cut(s) 208, 811
BsiSI CCGG 2 cut(s) 524, 804
BslFI GGGAC 2 cut(s) 144, 551
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 4 cut(s) 233, 241, 464, 597
BsmFI GGGAC 2 cut(s) 144, 551
BsnI GGCC 1 cut(s) 244
Bso31I GGTCTC 2 cut(s) 241, 464
Bsp1286I GDGCHC 2 cut(s) 208, 811
Bsp143I GATC 5 cut(s) 50, 184, 460, 619, 652
BspACI CCGC 1 cut(s) 793
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 2 cut(s) 44, 544
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 415, 654
BspMAI CTGCAG 2 cut(s) 631, 771
BspPI GGATC 5 cut(s) 45, 179, 468, 647, 660
BspTNI GGTCTC 2 cut(s) 241, 464
BsrI ACTGG 3 cut(s) 331, 442, 607
BssECI CCNNGG 2 cut(s) 567, 659
BssMI GATC 5 cut(s) 50, 184, 460, 619, 652
Bst2UI CCWGG 2 cut(s) 661, 838
Bst4CI ACNGT 3 cut(s) 326, 614, 754
Bst6I CTCTTC 3 cut(s) 111, 476, 481
BstBAI YACGTR 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 2 cut(s) 31, 552
BstDSI CCRYGG 1 cut(s) 567
BstF5I GGATG 1 cut(s) 801
BstKTI GATC 5 cut(s) 53, 187, 463, 622, 655
BstMAI GTCTC 4 cut(s) 233, 241, 464, 597
BstMBI GATC 5 cut(s) 50, 184, 460, 619, 652
BstMWI GCNNNNNNNGC 1 cut(s) 529
BstNI CCWGG 2 cut(s) 661, 838
BstNSI RCATGY 2 cut(s) 111, 532
BstSCI CCNGG 2 cut(s) 659, 836
BstSFI CTRYAG 2 cut(s) 627, 767
BstSLI GKGCMC 1 cut(s) 208
BstSNI TACGTA 1 cut(s) 194
BstV1I GCAGC 4 cut(s) 507, 641, 781, 802
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 4 cut(s) 50, 460, 619, 652
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 4 cut(s) 50, 460, 619, 652
BsuRI GGCC 1 cut(s) 244
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 1 cut(s) 801
BtsIMutI CAGTG 2 cut(s) 449, 813
Cac8I GCNNGC 1 cut(s) 42
CciI TCATGA 1 cut(s) 67
CseI GACGC 1 cut(s) 146
Csp6I GTAC 2 cut(s) 191, 195
CviAII CATG 6 cut(s) 68, 108, 201, 209, 529, 867
CviJI RGCY 9 cut(s) 40, 244, 379, 441, 449, 498, 520, 551, 809
CviKI_1 RGCY 9 cut(s) 40, 244, 379, 441, 449, 498, 520, 551, 809
CviQI GTAC 2 cut(s) 191, 195
DdeI CTNAG 2 cut(s) 31, 552
DpnI GATC 5 cut(s) 52, 186, 462, 621, 654
DpnII GATC 5 cut(s) 50, 184, 460, 619, 652
DraIII CACNNNGTG 1 cut(s) 203
EaeI YGGCCR 1 cut(s) 242
Eam1104I CTCTTC 3 cut(s) 111, 476, 481
EarI CTCTTC 3 cut(s) 111, 476, 481
Ecl136II GAGCTC 1 cut(s) 809
Eco105I TACGTA 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 811
Eco31I GGTCTC 2 cut(s) 241, 464
Eco53kI GAGCTC 1 cut(s) 809
EcoICRI GAGCTC 1 cut(s) 809
EcoRI GAATTC 1 cut(s) 696
EcoRII CCWGG 2 cut(s) 659, 836
EcoT22I ATGCAT 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 811
FaeI CATG 6 cut(s) 71, 111, 204, 212, 532, 870
FaqI GGGAC 2 cut(s) 144, 551
FatI CATG 6 cut(s) 67, 107, 200, 208, 528, 866
FauNDI CATATG 1 cut(s) 164
Fnu4HI GCNGC 4 cut(s) 521, 630, 770, 791
FokI GGATG 1 cut(s) 808
FriOI GRGCYC 1 cut(s) 811
Fsp4HI GCNGC 4 cut(s) 521, 630, 770, 791
FspBI CTAG 2 cut(s) 45, 617
GluI GCNGC 4 cut(s) 521, 630, 770, 791
HaeIII GGCC 1 cut(s) 244
HapII CCGG 2 cut(s) 524, 804
HgaI GACGC 1 cut(s) 146
Hin1II CATG 6 cut(s) 71, 111, 204, 212, 532, 870
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 6 cut(s) 11, 29, 71, 359, 407, 664
HpaII CCGG 2 cut(s) 524, 804
HphI GGTGA 2 cut(s) 20, 620
Hpy166II GTNNAC 2 cut(s) 197, 206
Hpy188I TCNGA 6 cut(s) 34, 90, 319, 337, 418, 597
Hpy188III TCNNGA 3 cut(s) 68, 617, 668
Hpy8I GTNNAC 2 cut(s) 197, 206
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 3 cut(s) 326, 614, 754
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 9 cut(s) 26, 83, 179, 206, 219, 312, 532, 629, 769
HpyF10VI GCNNNNNNNGC 1 cut(s) 529
HpyF3I CTNAG 2 cut(s) 31, 552
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 6 cut(s) 71, 111, 204, 212, 532, 870
Kzo9I GATC 5 cut(s) 50, 184, 460, 619, 652
LmnI GCTCC 1 cut(s) 806
Lsp1109I GCAGC 4 cut(s) 507, 641, 781, 802
LweI GCATC 1 cut(s) 641
MaeI CTAG 2 cut(s) 45, 617
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 608
MalI GATC 5 cut(s) 52, 186, 462, 621, 654
MboI GATC 5 cut(s) 50, 184, 460, 619, 652
MboII GAAGA 6 cut(s) 60, 128, 354, 493, 498, 692
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 4 cut(s) 50, 460, 619, 652
MhlI GDGCHC 2 cut(s) 208, 811
MluCI AATT 7 cut(s) 20, 78, 280, 348, 492, 696, 855
MlyI GAGTC 2 cut(s) 23, 368
Mph1103I ATGCAT 1 cut(s) 534
MseI TTAA 2 cut(s) 279, 342
MspA1I CMGCKG 1 cut(s) 793
MspI CCGG 2 cut(s) 524, 804
MspR9I CCNGG 2 cut(s) 661, 838
MunI CAATTG 1 cut(s) 78
MvaI CCWGG 2 cut(s) 661, 838
MwoI GCNNNNNNNGC 1 cut(s) 529
NdeI CATATG 1 cut(s) 164
NdeII GATC 5 cut(s) 50, 184, 460, 619, 652
NlaIII CATG 6 cut(s) 71, 111, 204, 212, 532, 870
NlaIV GGNNCC 2 cut(s) 415, 654
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 608
NsiI ATGCAT 1 cut(s) 534
NspI RCATGY 2 cut(s) 111, 532
PagI TCATGA 1 cut(s) 67
PfeI GAWTC 4 cut(s) 11, 71, 407, 664
PflMI CCANNNNNTGG 1 cut(s) 257
PkrI GCNGC 4 cut(s) 522, 631, 771, 792
PleI GAGTC 2 cut(s) 23, 367
PpsI GAGTC 2 cut(s) 23, 367
Ppu21I YACGTR 1 cut(s) 194
PsiI TTATAA 1 cut(s) 731
Psp124BI GAGCTC 1 cut(s) 811
Psp6I CCWGG 2 cut(s) 659, 836
PspGI CCWGG 2 cut(s) 659, 836
PspN4I GGNNCC 2 cut(s) 415, 654
PstI CTGCAG 2 cut(s) 631, 771
PsuI RGATCY 4 cut(s) 50, 460, 619, 652
RsaI GTAC 2 cut(s) 192, 196
RsaNI GTAC 2 cut(s) 191, 195
SacI GAGCTC 1 cut(s) 811
SaqAI TTAA 2 cut(s) 279, 342
SatI GCNGC 4 cut(s) 521, 630, 770, 791
Sau3AI GATC 5 cut(s) 50, 184, 460, 619, 652
SchI GAGTC 2 cut(s) 23, 368
ScrFI CCNGG 2 cut(s) 661, 838
SduI GDGCHC 2 cut(s) 208, 811
SfaNI GCATC 1 cut(s) 641
SfcI CTRYAG 2 cut(s) 627, 767
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
SnaBI TACGTA 1 cut(s) 194
Sse9I AATT 7 cut(s) 20, 78, 280, 348, 492, 696, 855
SsiI CCGC 1 cut(s) 793
SspMI CTAG 2 cut(s) 45, 617
SstI GAGCTC 1 cut(s) 811
StyD4I CCNGG 2 cut(s) 659, 836
TaaI ACNGT 3 cut(s) 326, 614, 754
TaiI ACGT 1 cut(s) 196
TaqI TCGA 2 cut(s) 57, 114
TasI AATT 7 cut(s) 20, 78, 280, 348, 492, 696, 855
TfiI GAWTC 4 cut(s) 11, 71, 407, 664
Tru1I TTAA 2 cut(s) 279, 342
Tru9I TTAA 2 cut(s) 279, 342
TscAI CASTG 2 cut(s) 449, 820
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 4 cut(s) 520, 629, 769, 790
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 3 cut(s) 435, 441, 494
TspGWI ACGGA 2 cut(s) 584, 727
TspRI CASTG 2 cut(s) 449, 820
Van91I CCANNNNNTGG 1 cut(s) 257
VneI GTGCAC 1 cut(s) 204
XapI RAATTY 4 cut(s) 20, 348, 696, 855
XbaI TCTAGA 1 cut(s) 616
XceI RCATGY 2 cut(s) 111, 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 574
XspI CTAG 2 cut(s) 45, 617
Zsp2I ATGCAT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.