Rmu_co8335743.1_g000001

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8335743.1
OG0000521
Physical Location & Seq
Reverse (-)
1 .. 866
866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8335743.1_g000001.1.cds

Sequence Viewer

Length: 632 bp
atgtatgttggtcatctcggggagctatcacttgcaggcgcttcaatggccacttcattcgcttcggtcaccggtttgagcttgataatgggaatgtgtagcgcactggacactttctgcggtcaatcctatggagcgaaacagtatcggatgcttggtatacatatgcagagggcaatgcttgttcttttgctggtgagcattcctcttgcgattatatgggccaatgcaggaaggattcttcagttcttgggtcaagatccagagatatctgctgctgccggagattatgctcgtctgatgataccatgcattttcgcttatgcaatcctacaatgtcatgctagattcctgcaaacacaaaacaatgtggttccgatgattgttagcaccggaactgcaacactgctacacttgcttatctgttggcttctggtatacaagaccagcctcggatacaaaggtgctgctgtggcaaacgccatcacctattggatcaatgcattgttattgtttctttatgtcagaatctctccatcttgcaagagcacatggactggattctcaaaggaggccttccatggacttcccacttttttaagactatcgattccttcagctgtcatgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

210

Amino Acids

22.82

Weight (kDa)

9.11

Isoelectric Point (pI)

25.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis pycom13g23330
rosa_chinensis RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 160, 438
AciI CCGC 1 cut(s) 120
AclWI GGATC 2 cut(s) 254, 503
AcoI YGGCCR 1 cut(s) 48
AcuI CTGAAG 2 cut(s) 227, 600
AgeI ACCGGT 1 cut(s) 71
AgsI TTSAA 1 cut(s) 45
AluBI AGCT 3 cut(s) 25, 81, 620
AluI AGCT 3 cut(s) 25, 81, 620
Alw21I GWGCWC 1 cut(s) 551
AlwI GGATC 2 cut(s) 254, 503
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 3 cut(s) 48, 222, 573
ApeKI GCWGC 3 cut(s) 275, 278, 467
AsiGI ACCGGT 1 cut(s) 71
AspLEI GCGC 2 cut(s) 41, 104
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 3 cut(s) 61, 208, 478
AvaI CYCGRG 1 cut(s) 17
BaeI ACNNNNGTAYC 2 cut(s) 448, 481
BalI TGGCCA 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 551
BbvI GCAGC 3 cut(s) 262, 265, 454
BccI CCATC 2 cut(s) 491, 544
BciVI GTATCC 1 cut(s) 449
BfaI CTAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 42
BfuI GTATCC 1 cut(s) 449
BisI GCNGC 3 cut(s) 276, 279, 468
BlsI GCNGC 3 cut(s) 277, 280, 469
BmeT110I CYCGRG 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 375
BmsI GCATC 1 cut(s) 141
BplI GAGNNNNNCTC 2 cut(s) 190, 222
Bsa29I ATCGAT 1 cut(s) 608
BsaJI CCNNGG 2 cut(s) 451, 580
BsaWI WCCGGW 2 cut(s) 71, 392
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 111, 562
Bse3DI GCAATG 1 cut(s) 183
BseCI ATCGAT 1 cut(s) 608
BseDI CCNNGG 2 cut(s) 451, 580
BseGI GGATG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 111, 562
BseXI GCAGC 3 cut(s) 262, 265, 454
BshFI GGCC 3 cut(s) 50, 224, 575
BshTI ACCGGT 1 cut(s) 71
BshVI ATCGAT 1 cut(s) 608
BsiHKAI GWGCWC 1 cut(s) 551
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 3 cut(s) 72, 282, 393
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 3 cut(s) 50, 224, 575
BsoBI CYCGRG 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 551
Bsp143I GATC 2 cut(s) 259, 495
Bsp19I CCATGG 1 cut(s) 580
BspACI CCGC 1 cut(s) 120
BspANI GGCC 3 cut(s) 50, 224, 575
BspDI ATCGAT 1 cut(s) 608
BspLI GGNNCC 1 cut(s) 375
BspPI GGATC 2 cut(s) 254, 503
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 2 cut(s) 111, 562
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 451, 580
BssMI GATC 2 cut(s) 259, 495
BssNAI GTATAC 2 cut(s) 161, 439
BssT1I CCWWGG 1 cut(s) 580
Bst1107I GTATAC 2 cut(s) 161, 439
Bst4CI ACNGT 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 629
BstDSI CCRYGG 1 cut(s) 580
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 2 cut(s) 41, 104
BstKTI GATC 2 cut(s) 262, 498
BstMBI GATC 2 cut(s) 259, 495
BstMWI GCNNNNNNNGC 3 cut(s) 47, 415, 473
BstPI GGTNACC 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 262, 265, 454
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BstZ17I GTATAC 2 cut(s) 161, 439
Bsu15I ATCGAT 1 cut(s) 608
BsuI GTATCC 1 cut(s) 449
BsuRI GGCC 3 cut(s) 50, 224, 575
BsuTUI ATCGAT 1 cut(s) 608
BtgI CCRYGG 1 cut(s) 580
BtsCI GGATG 1 cut(s) 156
BtsI GCAGTG 1 cut(s) 404
BtsIMutI CAGTG 2 cut(s) 104, 404
Cac8I GCNNGC 1 cut(s) 37
CfoI GCGC 2 cut(s) 41, 104
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 222
ClaI ATCGAT 1 cut(s) 608
CspAI ACCGGT 1 cut(s) 71
CviAII CATG 5 cut(s) 309, 341, 552, 581, 625
CviJI RGCY 8 cut(s) 25, 50, 81, 224, 430, 450, 575, 620
CviKI_1 RGCY 8 cut(s) 25, 50, 81, 224, 430, 450, 575, 620
DdeI CTNAG 1 cut(s) 629
DpnI GATC 2 cut(s) 261, 497
DpnII GATC 2 cut(s) 259, 495
EaeI YGGCCR 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 580
Eco147I AGGCCT 1 cut(s) 575
Eco32I GATATC 1 cut(s) 270
Eco57I CTGAAG 2 cut(s) 227, 600
Eco88I CYCGRG 1 cut(s) 17
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRV GATATC 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 580
EcoT22I ATGCAT 2 cut(s) 314, 505
ErhI CCWWGG 1 cut(s) 580
FaeI CATG 5 cut(s) 312, 344, 555, 584, 628
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FatI CATG 5 cut(s) 308, 340, 551, 580, 624
FauNDI CATATG 1 cut(s) 165
FblI GTMKAC 2 cut(s) 160, 438
Fnu4HI GCNGC 3 cut(s) 276, 279, 468
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 3 cut(s) 276, 279, 468
FspBI CTAG 1 cut(s) 345
GlaI GCGC 2 cut(s) 40, 103
GluI GCNGC 3 cut(s) 276, 279, 468
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 3 cut(s) 50, 224, 575
HapII CCGG 3 cut(s) 72, 282, 393
HhaI GCGC 2 cut(s) 41, 104
Hin1II CATG 5 cut(s) 312, 344, 555, 584, 628
Hin6I GCGC 2 cut(s) 39, 102
HinP1I GCGC 2 cut(s) 39, 102
HinfI GANTC 5 cut(s) 238, 348, 528, 561, 610
HpaII CCGG 3 cut(s) 72, 282, 393
HphI GGTGA 3 cut(s) 61, 208, 478
Hpy166II GTNNAC 2 cut(s) 161, 439
Hpy188I TCNGA 5 cut(s) 150, 300, 378, 455, 527
Hpy188III TCNNGA 2 cut(s) 257, 263
Hpy8I GTNNAC 2 cut(s) 161, 439
HpyAV CCTTC 3 cut(s) 228, 586, 624
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4V TGCA 9 cut(s) 35, 169, 230, 312, 326, 355, 401, 503, 543
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 415, 473
HpyF3I CTNAG 1 cut(s) 629
Hsp92II CATG 5 cut(s) 312, 344, 555, 584, 628
HspAI GCGC 2 cut(s) 39, 102
Kzo9I GATC 2 cut(s) 259, 495
LmnI GCTCC 2 cut(s) 22, 134
Lsp1109I GCAGC 3 cut(s) 262, 265, 454
LweI GCATC 1 cut(s) 141
MaeI CTAG 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 261, 497
MboI GATC 2 cut(s) 259, 495
MboII GAAGA 1 cut(s) 233
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 551
MlsI TGGCCA 1 cut(s) 50
MluNI TGGCCA 1 cut(s) 50
MnlI CCTC 4 cut(s) 165, 216, 461, 565
Mox20I TGGCCA 1 cut(s) 50
Mph1103I ATGCAT 2 cut(s) 314, 505
MscI TGGCCA 1 cut(s) 50
MseI TTAA 1 cut(s) 599
Msp20I TGGCCA 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 3 cut(s) 72, 282, 393
Mva1269I GAATGC 1 cut(s) 201
MwoI GCNNNNNNNGC 3 cut(s) 47, 415, 473
NcoI CCATGG 1 cut(s) 580
NdeI CATATG 1 cut(s) 165
NdeII GATC 2 cut(s) 259, 495
NlaIII CATG 5 cut(s) 312, 344, 555, 584, 628
NlaIV GGNNCC 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 67
NsiI ATGCAT 2 cut(s) 314, 505
PceI AGGCCT 1 cut(s) 575
PctI GAATGC 1 cut(s) 201
PfeI GAWTC 5 cut(s) 238, 348, 528, 561, 610
PinAI ACCGGT 1 cut(s) 71
PkrI GCNGC 3 cut(s) 277, 280, 469
PspEI GGTNACC 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 375
PspPI GGNCC 1 cut(s) 222
PsuI RGATCY 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 620
SaqAI TTAA 1 cut(s) 599
SatI GCNGC 3 cut(s) 276, 279, 468
Sau3AI GATC 2 cut(s) 259, 495
Sau96I GGNCC 1 cut(s) 222
SduI GDGCHC 1 cut(s) 551
SetI ASST 5 cut(s) 27, 83, 466, 491, 622
SfaNI GCATC 1 cut(s) 141
SseBI AGGCCT 1 cut(s) 575
SsiI CCGC 1 cut(s) 120
SspMI CTAG 1 cut(s) 345
StuI AGGCCT 1 cut(s) 575
StyI CCWWGG 1 cut(s) 580
TaaI ACNGT 1 cut(s) 144
TaqI TCGA 1 cut(s) 608
TaqII GACCGA 1 cut(s) 55
TfiI GAWTC 5 cut(s) 238, 348, 528, 561, 610
Tru1I TTAA 1 cut(s) 599
Tru9I TTAA 1 cut(s) 599
TscAI CASTG 2 cut(s) 111, 411
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 3 cut(s) 275, 278, 467
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 2 cut(s) 111, 411
XmiI GTMKAC 2 cut(s) 160, 438
XspI CTAG 1 cut(s) 345
Zsp2I ATGCAT 2 cut(s) 314, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.