Rroxscaffold_5G00348240

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000521
Physical Location & Seq
Forward (+)
20260549 .. 20263652
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00348240.1

Sequence Viewer

Length: 312 bp
ATGCTTGGTGTACACATGCAGAGGGCAATGCTTGTTCTTCTGCTGGCCTGCATTCCTCTTGCAACTATATGGTTCAATGCAGGCCACATTCTCAAATTTTTGGGTCAAGATCCAGAAATTGCTGCTGCCGCTGGAAACTATGCTCGTTTCCTGATACCTTGCATTTTTGCTTTACGCAGTCCAACAATGTCATTCCAGATTCTTGCAGACCCAAAACAATGTGGTTCCTATGATAGCTACCACAGGTATTGCAACACTAGTGCACTTGCTTCTCTGTTGGCTTCTGATATACAAGACCAGCTTGGGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

103

Amino Acids

11.29

Weight (kDa)

6.79

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 2 - 58 1.5e-10 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis pycom13g23330
rosa_chinensis RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 129
AclWI GGATC 1 cut(s) 104
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 1 cut(s) 12
AgsI TTSAA 1 cut(s) 76
AhlI ACTAGT 1 cut(s) 257
AluBI AGCT 2 cut(s) 237, 301
AluI AGCT 2 cut(s) 237, 301
Alw21I GWGCWC 1 cut(s) 265
Alw44I GTGCAC 1 cut(s) 261
AlwI GGATC 1 cut(s) 104
AoxI GGCC 2 cut(s) 45, 82
ApaLI GTGCAC 1 cut(s) 261
ApeKI GCWGC 2 cut(s) 122, 125
ApoI RAATTY 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 109, 112
BcuI ACTAGT 1 cut(s) 257
BfaI CTAG 1 cut(s) 258
BisI GCNGC 3 cut(s) 123, 126, 129
BlsI GCNGC 3 cut(s) 124, 127, 130
BmiI GGNNCC 1 cut(s) 226
Bse3DI GCAATG 1 cut(s) 33
BseMI GCAATG 1 cut(s) 33
BseSI GKGCMC 1 cut(s) 265
BseXI GCAGC 2 cut(s) 109, 112
BshFI GGCC 2 cut(s) 47, 84
BsiHKAI GWGCWC 1 cut(s) 265
BsmI GAATGC 1 cut(s) 51
BsnI GGCC 2 cut(s) 47, 84
Bsp1286I GDGCHC 1 cut(s) 265
Bsp1407I TGTACA 1 cut(s) 10
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 1 cut(s) 129
BspANI GGCC 2 cut(s) 47, 84
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 33
BsrGI TGTACA 1 cut(s) 10
BssMI GATC 1 cut(s) 109
BstAUI TGTACA 1 cut(s) 10
BstC8I GCNNGC 3 cut(s) 45, 49, 82
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 19
BstSLI GKGCMC 1 cut(s) 265
BstV1I GCAGC 2 cut(s) 109, 112
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 2 cut(s) 47, 84
Cac8I GCNNGC 3 cut(s) 45, 49, 82
Csp6I GTAC 1 cut(s) 11
CspCI CAANNNNNGTGG 2 cut(s) 230, 265
CviAII CATG 1 cut(s) 16
CviJI RGCY 5 cut(s) 47, 84, 237, 281, 301
CviKI_1 RGCY 5 cut(s) 47, 84, 237, 281, 301
CviQI GTAC 1 cut(s) 11
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
FaeI CATG 1 cut(s) 19
FaiI YATR 7 cut(s) 17, 68, 70, 141, 231, 290, 310
FalI AAGNNNNNCTT 1 cut(s) 285
FatI CATG 1 cut(s) 15
Fnu4HI GCNGC 3 cut(s) 123, 126, 129
Fsp4HI GCNGC 3 cut(s) 123, 126, 129
FspBI CTAG 1 cut(s) 258
GluI GCNGC 3 cut(s) 123, 126, 129
HaeIII GGCC 2 cut(s) 47, 84
Hin1II CATG 1 cut(s) 19
HinfI GANTC 1 cut(s) 199
Hpy166II GTNNAC 3 cut(s) 11, 13, 263
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 4 cut(s) 107, 113, 151, 196
Hpy8I GTNNAC 3 cut(s) 11, 13, 263
HpyCH4V TGCA 8 cut(s) 19, 51, 62, 80, 162, 206, 252, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
Hsp92II CATG 1 cut(s) 19
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 8 cut(s) 29, 61, 66, 117, 126, 164, 209, 229
Lsp1109I GCAGC 2 cut(s) 109, 112
MaeI CTAG 1 cut(s) 258
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 29
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 2 cut(s) 95, 117
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 2 cut(s) 15, 66
MspA1I CMGCKG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 226
NspI RCATGY 1 cut(s) 19
PctI GAATGC 1 cut(s) 51
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 3 cut(s) 124, 127, 130
PspN4I GGNNCC 1 cut(s) 226
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SatI GCNGC 3 cut(s) 123, 126, 129
Sau3AI GATC 1 cut(s) 109
SduI GDGCHC 1 cut(s) 265
SetI ASST 4 cut(s) 160, 239, 248, 303
SpeI ACTAGT 1 cut(s) 257
Sse9I AATT 2 cut(s) 95, 117
SsiI CCGC 1 cut(s) 129
SspMI CTAG 1 cut(s) 258
TasI AATT 2 cut(s) 95, 117
TatI WGTACW 1 cut(s) 10
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 199
TseI GCWGC 2 cut(s) 122, 125
VneI GTGCAC 1 cut(s) 261
XapI RAATTY 1 cut(s) 95
XceI RCATGY 1 cut(s) 19
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.