RchiOBHm_Chr7g0238161

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000521
Physical Location & Seq
Forward (+)
63553707 .. 63556422
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21343

Sequence Viewer

Length: 1419 bp
ATGGATGTAGAAGAAGAAAGATATGATCTTGAATCACTGTTGATTCCTAATTCTCAAGAACATGCTATCGAATCGAGAAAGGGATTCCTGAACAAAGATGAGATTTTTGAGGAAGTGAAGAAGCAGCTGTTGTTAATATGGCCGCTTGTGTCATCAAATTTCTTGCTATTTGTTATGCAAGTTATTTCAGTCATGTATGTCGGTCATCTTGGAGAGCTATCGCTCGCTGGTGCTTCAATGGCTACTTCATTCGCTTCAGTCACTGGTTTGAGCTTGATACTGGGAATGTATAGCGCCTTGGACACTTTCTGCGGTCAGTCCTTTGGAGCAAAACAGTATCGGATGCTTGGTATACATATGCAGAGGGCAATGCTTATTCTTTTGCTCGTCAGCGTTCCTCTTGCAATTATATGGGCTAATGCAGGCAATATTCTTCAGTGCTTAGGTCAAGATCCACAGATATCCTCTGCTGCAGGAGATTATGCTCGTTTGATGATACCTTGCATTTTTGCGTATGCCATCCTACAATGTCATGCTAGATTCTTGCAAACTCAAAGAAATGTGATTCCAATGATTGCTAGCACAGGAACTGCAACACTACTGCACTTGCTTACCTGTTGGGTTATGGTATACAAGACCAGCCTTGGATCTAGAGGTGCTGCTGTGGCAAACGCCATCACCTATTGGATCAATGCATTGTTTTTGTTTATTTATGTCAGAGTTTCTCCCTCTTGCAAGAACACATGGACTGGATTCTCAAAGGAGGCCTTCCATGTAATTCCCACTTTTCTAAAACTATCTATCCCTTCAGCTTTAATGTCCAGCTTAGAAATGTGGTCATTTGAAATGTTGGTCCTCGTATCTGGTTTGCTTCCGAATCCAAAACTTGAAACATCAGTCCTGTCAATCAGCACAAGAGTTTCAAATCAATTGGGTGCTGGGCAACCGCAACTAGCGCGTCTGGCAGCATGTGTTGCACTTTGCCTTGTTATTACTGAAGGCATTGTTGGGCGGGTATCCAATGAAGCTCTGTCCTACTGGAGATTTTTGCCATCCCTAACTGCATCTAAACGAATTCAGGAAGAAAACAAAAAATCAAAAACAAAAACAGTTTTACAATTATTCCAAAGTCTTCTCATTAAAAAAAAAGAAAAGAAAAGATTTCATAACCGATTCATTGACAATAAGTTGCTTCACATTTCAGGTATCATAAGAGGAAGTGGGCGGCAGAAGATTGGTGCATATGTTAATCTAGGAGCTTATTATCTTATCGGCATTCCTACTGGATTATTGTTTGCTTTTAACCTCCACATCGGAGGGAAAGGTCTTTGGATAGGAATTATCCTGGCGCTGTGTGTGCAGTCACTGTTTCTTGCGATTATAGTCTTACGGACTGATTGGGATAAAGAAGTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

472

Amino Acids

52.35

Weight (kDa)

9.39

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 48 - 208 1e-36 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis pycom13g23330
rosa_chinensis RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 352, 630
AccII CGCG 1 cut(s) 958
AciI CCGC 5 cut(s) 143, 312, 947, 1012, 1225
AclWI GGATC 3 cut(s) 446, 655, 695
AcoI YGGCCR 1 cut(s) 140
AcsI RAATTY 2 cut(s) 157, 1074
AcuI CTGAAG 4 cut(s) 240, 419, 792, 1017
AgsI TTSAA 5 cut(s) 32, 237, 845, 890, 924
AjnI CCWGG 1 cut(s) 1344
AjuI GAANNNNNNNTTGG 2 cut(s) 990, 1022
AluBI AGCT 7 cut(s) 127, 217, 273, 812, 825, 1028, 1259
AluI AGCT 7 cut(s) 127, 217, 273, 812, 825, 1028, 1259
AlwI GGATC 3 cut(s) 446, 655, 695
AlwNI CAGNNNCTG 3 cut(s) 263, 590, 1366
AoxI GGCC 2 cut(s) 140, 765
ApeKI GCWGC 4 cut(s) 124, 470, 659, 965
ApoI RAATTY 2 cut(s) 157, 1074
AspLEI GCGC 3 cut(s) 296, 958, 1351
AspS9I GGNCC 1 cut(s) 853
AsuHPI GGTGA 1 cut(s) 670
AsuNHI GCTAGC 1 cut(s) 578
AvaII GGWCC 1 cut(s) 853
BbsI GAAGAC 1 cut(s) 1124
BbvI GCAGC 4 cut(s) 136, 457, 646, 977
BccI CCATC 3 cut(s) 527, 683, 1060
BciT130I CCWGG 1 cut(s) 1346
BciVI GTATCC 1 cut(s) 1027
BfaI CTAG 5 cut(s) 537, 579, 651, 953, 1253
BfmI CTRYAG 1 cut(s) 471
BfoI RGCGCY 2 cut(s) 297, 1352
BfuI GTATCC 1 cut(s) 1027
BisI GCNGC 6 cut(s) 125, 143, 471, 660, 966, 1226
BlsI GCNGC 6 cut(s) 126, 144, 472, 661, 967, 1227
Bme1390I CCNGG 1 cut(s) 1346
Bme18I GGWCC 1 cut(s) 853
BmgT120I GGNCC 1 cut(s) 853
BmrFI CCNGG 1 cut(s) 1346
BmrI ACTGGG 1 cut(s) 290
BmsI GCATC 2 cut(s) 333, 1073
BmtI GCTAGC 1 cut(s) 582
BmuI ACTGGG 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 1124
BpmI CTGGAG 1 cut(s) 1060
Bpu10I CCTNAGC 1 cut(s) 442
BpuEI CTTGAG 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 297, 643
Bse1I ACTGG 5 cut(s) 268, 285, 754, 1043, 1288
Bse3DI GCAATG 1 cut(s) 375
BseBI CCWGG 1 cut(s) 1346
BseDI CCNNGG 2 cut(s) 297, 643
BseGI GGATG 4 cut(s) 10, 348, 519, 1052
BseMI GCAATG 1 cut(s) 375
BseNI ACTGG 5 cut(s) 268, 285, 754, 1043, 1288
BseXI GCAGC 4 cut(s) 136, 457, 646, 977
BseYI CCCAGC 1 cut(s) 938
BsgI GTGCAG 2 cut(s) 587, 1379
Bsh1236I CGCG 1 cut(s) 958
BshFI GGCC 2 cut(s) 142, 767
BsmI GAATGC 1 cut(s) 1275
BsnI GGCC 2 cut(s) 142, 767
Bsp143I GATC 4 cut(s) 25, 451, 647, 687
BspACI CCGC 5 cut(s) 143, 312, 947, 1012, 1225
BspANI GGCC 2 cut(s) 142, 767
BspFNI CGCG 1 cut(s) 958
BspMAI CTGCAG 1 cut(s) 475
BspOI GCTAGC 1 cut(s) 582
BspPI GGATC 3 cut(s) 446, 655, 695
BsrDI GCAATG 1 cut(s) 375
BsrI ACTGG 5 cut(s) 268, 285, 754, 1043, 1288
BssECI CCNNGG 2 cut(s) 297, 643
BssMI GATC 4 cut(s) 25, 451, 647, 687
BssNAI GTATAC 2 cut(s) 353, 631
BssT1I CCWWGG 2 cut(s) 297, 643
Bst1107I GTATAC 2 cut(s) 353, 631
Bst2UI CCWGG 1 cut(s) 1346
Bst4CI ACNGT 4 cut(s) 39, 336, 1111, 1368
BstAPI GCANNNNNTGC 1 cut(s) 974
BstC8I GCNNGC 3 cut(s) 225, 424, 580
BstDEI CTNAG 2 cut(s) 442, 826
BstF5I GGATG 4 cut(s) 10, 348, 519, 1052
BstFNI CGCG 1 cut(s) 958
BstH2I RGCGCY 2 cut(s) 297, 1352
BstHHI GCGC 3 cut(s) 296, 958, 1351
BstKTI GATC 4 cut(s) 28, 454, 650, 690
BstMBI GATC 4 cut(s) 25, 451, 647, 687
BstMWI GCNNNNNNNGC 6 cut(s) 239, 665, 955, 962, 974, 1357
BstNI CCWGG 1 cut(s) 1346
BstNSI RCATGY 2 cut(s) 65, 972
BstSCI CCNGG 1 cut(s) 1344
BstSFI CTRYAG 1 cut(s) 471
BstUI CGCG 1 cut(s) 958
BstV1I GCAGC 4 cut(s) 136, 457, 646, 977
BstV2I GAAGAC 1 cut(s) 1124
BstX2I RGATCY 2 cut(s) 451, 647
BstYI RGATCY 2 cut(s) 451, 647
BstZ17I GTATAC 2 cut(s) 353, 631
BsuI GTATCC 1 cut(s) 1027
BsuRI GGCC 2 cut(s) 142, 767
BtsCI GGATG 4 cut(s) 10, 348, 519, 1052
BtsIMutI CAGTG 4 cut(s) 35, 261, 443, 1364
Cac8I GCNNGC 3 cut(s) 225, 424, 580
CaiI CAGNNNCTG 3 cut(s) 263, 590, 1366
CfoI GCGC 3 cut(s) 296, 958, 1351
Cfr13I GGNCC 1 cut(s) 853
CseI GACGC 1 cut(s) 947
CviAII CATG 6 cut(s) 62, 193, 533, 744, 773, 969
DdeI CTNAG 2 cut(s) 442, 826
DpnI GATC 4 cut(s) 27, 453, 649, 689
DpnII GATC 4 cut(s) 25, 451, 647, 687
EaeI YGGCCR 1 cut(s) 140
Eco130I CCWWGG 2 cut(s) 297, 643
Eco147I AGGCCT 1 cut(s) 767
Eco32I GATATC 1 cut(s) 462
Eco47I GGWCC 1 cut(s) 853
Eco57I CTGAAG 4 cut(s) 240, 419, 792, 1017
EcoRI GAATTC 1 cut(s) 1074
EcoRII CCWGG 1 cut(s) 1344
EcoRV GATATC 1 cut(s) 462
EcoT14I CCWWGG 2 cut(s) 297, 643
EcoT22I ATGCAT 1 cut(s) 697
ErhI CCWWGG 2 cut(s) 297, 643
FaeI CATG 6 cut(s) 65, 196, 536, 747, 776, 972
FalI AAGNNNNNCTT 2 cut(s) 752, 784
FatI CATG 6 cut(s) 61, 192, 532, 743, 772, 968
FauI CCCGC 1 cut(s) 1005
FauNDI CATATG 2 cut(s) 357, 1243
FblI GTMKAC 2 cut(s) 352, 630
Fnu4HI GCNGC 6 cut(s) 125, 143, 471, 660, 966, 1226
FokI GGATG 4 cut(s) 17, 355, 506, 1039
Fsp4HI GCNGC 6 cut(s) 125, 143, 471, 660, 966, 1226
FspBI CTAG 5 cut(s) 537, 579, 651, 953, 1253
GlaI GCGC 3 cut(s) 295, 957, 1350
GluI GCNGC 6 cut(s) 125, 143, 471, 660, 966, 1226
GsaI CCCAGC 1 cut(s) 942
GsuI CTGGAG 1 cut(s) 1060
HaeII RGCGCY 2 cut(s) 297, 1352
HaeIII GGCC 2 cut(s) 142, 767
HgaI GACGC 1 cut(s) 947
HhaI GCGC 3 cut(s) 296, 958, 1351
Hin1II CATG 6 cut(s) 65, 196, 536, 747, 776, 972
Hin6I GCGC 3 cut(s) 294, 956, 1349
HinP1I GCGC 3 cut(s) 294, 956, 1349
HinfI GANTC 9 cut(s) 32, 43, 71, 84, 540, 565, 753, 877, 1173
HphI GGTGA 1 cut(s) 670
Hpy166II GTNNAC 2 cut(s) 353, 631
Hpy188I TCNGA 4 cut(s) 342, 719, 876, 1316
Hpy188III TCNNGA 7 cut(s) 29, 56, 75, 88, 449, 651, 1079
Hpy8I GTNNAC 2 cut(s) 353, 631
HpyAV CCTTC 3 cut(s) 778, 816, 992
HpyCH4III ACNGT 4 cut(s) 39, 336, 1111, 1368
HpyF10VI GCNNNNNNNGC 6 cut(s) 239, 665, 955, 962, 974, 1357
HpyF3I CTNAG 2 cut(s) 442, 826
Hsp92II CATG 6 cut(s) 65, 196, 536, 747, 776, 972
HspAI GCGC 3 cut(s) 294, 956, 1349
Kzo9I GATC 4 cut(s) 25, 451, 647, 687
LmnI GCTCC 2 cut(s) 326, 1256
Lsp1109I GCAGC 4 cut(s) 136, 457, 646, 977
LweI GCATC 2 cut(s) 333, 1073
MaeI CTAG 5 cut(s) 537, 579, 651, 953, 1253
MaeIII GTNAC 2 cut(s) 259, 1362
MalI GATC 4 cut(s) 27, 453, 649, 689
MboI GATC 4 cut(s) 25, 451, 647, 687
MboII GAAGA 7 cut(s) 23, 26, 130, 425, 1094, 1124, 1243
MfeI CAATTG 1 cut(s) 929
MflI RGATCY 2 cut(s) 451, 647
MluCI AATT 8 cut(s) 49, 157, 405, 777, 929, 1074, 1118, 1338
Mph1103I ATGCAT 1 cut(s) 697
MseI TTAA 5 cut(s) 134, 815, 1140, 1248, 1302
MspA1I CMGCKG 1 cut(s) 127
MspR9I CCNGG 1 cut(s) 1346
MunI CAATTG 1 cut(s) 929
Mva1269I GAATGC 1 cut(s) 1275
MvaI CCWGG 1 cut(s) 1346
MvnI CGCG 1 cut(s) 958
MwoI GCNNNNNNNGC 6 cut(s) 239, 665, 955, 962, 974, 1357
NdeI CATATG 2 cut(s) 357, 1243
NdeII GATC 4 cut(s) 25, 451, 647, 687
NheI GCTAGC 1 cut(s) 578
NlaIII CATG 6 cut(s) 65, 196, 536, 747, 776, 972
NmuCI GTSAC 2 cut(s) 259, 1362
NsiI ATGCAT 1 cut(s) 697
NspI RCATGY 2 cut(s) 65, 972
PceI AGGCCT 1 cut(s) 767
PctI GAATGC 1 cut(s) 1275
PfeI GAWTC 9 cut(s) 32, 43, 71, 84, 540, 565, 753, 877, 1173
PkrI GCNGC 6 cut(s) 126, 144, 472, 661, 967, 1227
Psp6I CCWGG 1 cut(s) 1344
PspFI CCCAGC 1 cut(s) 938
PspGI CCWGG 1 cut(s) 1344
PspPI GGNCC 1 cut(s) 853
PstI CTGCAG 1 cut(s) 475
PstNI CAGNNNCTG 3 cut(s) 263, 590, 1366
PsuI RGATCY 2 cut(s) 451, 647
PvuII CAGCTG 1 cut(s) 127
SaqAI TTAA 5 cut(s) 134, 815, 1140, 1248, 1302
SatI GCNGC 6 cut(s) 125, 143, 471, 660, 966, 1226
Sau3AI GATC 4 cut(s) 25, 451, 647, 687
Sau96I GGNCC 1 cut(s) 853
ScrFI CCNGG 1 cut(s) 1346
SfaNI GCATC 2 cut(s) 333, 1073
SfcI CTRYAG 1 cut(s) 471
SinI GGWCC 1 cut(s) 853
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 8 cut(s) 49, 157, 405, 777, 929, 1074, 1118, 1338
SseBI AGGCCT 1 cut(s) 767
SsiI CCGC 5 cut(s) 143, 312, 947, 1012, 1225
SspI AATATT 1 cut(s) 430
SspMI CTAG 5 cut(s) 537, 579, 651, 953, 1253
StuI AGGCCT 1 cut(s) 767
StyD4I CCNGG 1 cut(s) 1344
StyI CCWWGG 2 cut(s) 297, 643
TaaI ACNGT 4 cut(s) 39, 336, 1111, 1368
TaqI TCGA 2 cut(s) 69, 74
TaqII GACCGA 1 cut(s) 191
TasI AATT 8 cut(s) 49, 157, 405, 777, 929, 1074, 1118, 1338
TauI GCSGC 2 cut(s) 145, 1228
TfiI GAWTC 9 cut(s) 32, 43, 71, 84, 540, 565, 753, 877, 1173
Tru1I TTAA 5 cut(s) 134, 815, 1140, 1248, 1302
Tru9I TTAA 5 cut(s) 134, 815, 1140, 1248, 1302
TscAI CASTG 4 cut(s) 42, 268, 443, 1371
TseFI GTSAC 2 cut(s) 259, 1362
TseI GCWGC 4 cut(s) 124, 470, 659, 965
Tsp45I GTSAC 2 cut(s) 259, 1362
TspDTI ATGAA 4 cut(s) 237, 1038, 1154, 1165
TspGWI ACGGA 1 cut(s) 1405
TspRI CASTG 4 cut(s) 42, 268, 443, 1371
VpaK11BI GGWCC 1 cut(s) 853
XapI RAATTY 2 cut(s) 157, 1074
XbaI TCTAGA 1 cut(s) 650
XceI RCATGY 2 cut(s) 65, 972
XmiI GTMKAC 2 cut(s) 352, 630
XspI CTAG 5 cut(s) 537, 579, 651, 953, 1253
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.