Rh7BG352200

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000521
Physical Location & Seq
Reverse (-)
36833766 .. 36834236
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG352200.1

Sequence Viewer

Length: 471 bp
ATGGGAATGTGTAGCGTACTGGACACTTTCTGTGGTCAATCCTATGGAGCGAAACAGTATCTGATGCTTGGTATACATATACAGAGGGCAATGCTTGTTTTTTTGTTGGTGAGCATTCCTCTTGCGATTATATGGGCCAATGCAGGAAGGATTCTTCAGTTCTTGGGTCAAGATCTAGAGATATCTGCTGCTGCCGGAGATTATGCTCGTTTGATGATACCATGCATTTTCGCTTATGCAATCCTACAATGTCATGCTAGATTCCTGCAAACACGAAACAATGTGGTTCCAATGATTGTTAGCACAAGAACTGCAACACTGCTACATTTGCTTATCTGCTGGGTTCTGGTATACAAGACCAGCCTCGGATATAAAGGCGTTGCTGTGGCAAATGCCATCACATATTGGATCAATGCATTGTTATTGTTTCTTTGTCAGAATCTCTCTATCTTGCAAGAGCACATGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

156

Amino Acids

17.41

Weight (kDa)

8.58

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 1 - 115 5.9e-23 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis pycom13g23330
rosa_chinensis RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 73, 351
AclWI GGATC 1 cut(s) 416
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 1 cut(s) 18
Alw21I GWGCWC 1 cut(s) 462
AlwI GGATC 1 cut(s) 416
AlwNI CAGNNNCTG 1 cut(s) 61
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 188, 191
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 2 cut(s) 175, 178
BccI CCATC 1 cut(s) 404
BfaI CTAG 2 cut(s) 176, 258
BglII AGATCT 1 cut(s) 172
BisI GCNGC 2 cut(s) 189, 192
BlsI GCNGC 2 cut(s) 190, 193
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 288
BmsI GCATC 1 cut(s) 54
BplI GAGNNNNNCTC 2 cut(s) 103, 135
BsaJI CCNNGG 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 24
Bse3DI GCAATG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 364
BseMI GCAATG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 2 cut(s) 175, 178
BseYI CCCAGC 1 cut(s) 339
BshFI GGCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 462
BsiSI CCGG 1 cut(s) 195
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 2 cut(s) 172, 408
BspANI GGCC 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 96
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 2 cut(s) 172, 408
BssNAI GTATAC 2 cut(s) 74, 352
Bst1107I GTATAC 2 cut(s) 74, 352
Bst4CI ACNGT 1 cut(s) 57
BstKTI GATC 2 cut(s) 175, 411
BstMBI GATC 2 cut(s) 172, 408
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstV1I GCAGC 2 cut(s) 175, 178
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BstZ17I GTATAC 2 cut(s) 74, 352
BsuRI GGCC 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 317
BtsIMutI CAGTG 1 cut(s) 317
CaiI CAGNNNCTG 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 17
CviAII CATG 3 cut(s) 222, 254, 463
CviJI RGCY 2 cut(s) 137, 363
CviKI_1 RGCY 2 cut(s) 137, 363
CviQI GTAC 1 cut(s) 17
DpnI GATC 2 cut(s) 174, 410
DpnII GATC 2 cut(s) 172, 408
Eco32I GATATC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 140
EcoRV GATATC 1 cut(s) 183
EcoT22I ATGCAT 2 cut(s) 227, 418
FaeI CATG 3 cut(s) 225, 257, 466
FatI CATG 3 cut(s) 221, 253, 462
FblI GTMKAC 2 cut(s) 73, 351
Fnu4HI GCNGC 2 cut(s) 189, 192
Fsp4HI GCNGC 2 cut(s) 189, 192
FspBI CTAG 2 cut(s) 176, 258
GluI GCNGC 2 cut(s) 189, 192
GsaI CCCAGC 1 cut(s) 343
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 195
Hin1II CATG 3 cut(s) 225, 257, 466
HinfI GANTC 3 cut(s) 151, 261, 439
HpaII CCGG 1 cut(s) 195
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 2 cut(s) 74, 352
Hpy188I TCNGA 3 cut(s) 63, 368, 438
Hpy188III TCNNGA 2 cut(s) 170, 176
Hpy8I GTNNAC 2 cut(s) 74, 352
HpyAV CCTTC 1 cut(s) 141
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4V TGCA 7 cut(s) 143, 225, 239, 268, 314, 416, 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
Hsp92II CATG 3 cut(s) 225, 257, 466
Kzo9I GATC 2 cut(s) 172, 408
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 7 cut(s) 5, 129, 208, 278, 325, 332, 373
Lsp1109I GCAGC 2 cut(s) 175, 178
LweI GCATC 1 cut(s) 54
MaeI CTAG 2 cut(s) 176, 258
MalI GATC 2 cut(s) 174, 410
MboI GATC 2 cut(s) 172, 408
MboII GAAGA 1 cut(s) 146
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 462
MnlI CCTC 3 cut(s) 78, 129, 374
Mph1103I ATGCAT 2 cut(s) 227, 418
MspI CCGG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 328
NdeII GATC 2 cut(s) 172, 408
NlaIII CATG 3 cut(s) 225, 257, 466
NlaIV GGNNCC 1 cut(s) 288
NsiI ATGCAT 2 cut(s) 227, 418
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 3 cut(s) 151, 261, 439
PkrI GCNGC 2 cut(s) 190, 193
PspFI CCCAGC 1 cut(s) 339
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 1 cut(s) 135
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SatI GCNGC 2 cut(s) 189, 192
Sau3AI GATC 2 cut(s) 172, 408
Sau96I GGNCC 1 cut(s) 135
SduI GDGCHC 1 cut(s) 462
SfaNI GCATC 1 cut(s) 54
SspMI CTAG 2 cut(s) 176, 258
TaaI ACNGT 1 cut(s) 57
TfiI GAWTC 3 cut(s) 151, 261, 439
TscAI CASTG 1 cut(s) 324
TseI GCWGC 2 cut(s) 188, 191
TspRI CASTG 1 cut(s) 324
XbaI TCTAGA 1 cut(s) 175
XmiI GTMKAC 2 cut(s) 73, 351
XspI CTAG 2 cut(s) 176, 258
Zsp2I ATGCAT 2 cut(s) 227, 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.