Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000521

Physical Location & Seq

Genomic Coordinates Forward (+)

31226079 .. 31226993

Gene Structure 915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1231800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATCGTTCTTCCATCCGGTCTTCTTCCAAACCCAGAGTTGGAAACCTCAGTGCTTTCTATCAGCAACGAAACAGAAGTTGTTGATTATCTTGCAACCATGATGCCTATACTTGCAACATCCCACTTTATAGACGCCCTCCAGTGTGTTCTTTCGGGTACTGCCAGAGGATGTGGGTGGCAGAAGATTGGAGCATATGTTAATCTCGGGGCGTACTACTTAGTTGGAATTCCTTTGGCTATTTTGATGGCTTTCGTCTTTCATGCTGGTGGAAAGGGGCTTTGGCTGGGGATCATCTGTGCACTGATTGTGCAAGTGTTGTTGCTTCTTATCGTAACCATACGCACAAACTGGGAGAAACAGGTTGCATTCTCTCTTTCTCTATCAGTCAATCAATCAATCTATCGATCGGAACACAAATTATACTTTTCCTCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0015238 GO:0015893 GO:0016020 GO:0022857 GO:0031090 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

147

Amino Acids

15.92

Weight (kDa)

6.25

Isoelectric Point (pI)

26.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	20 - 81	6.5e-09	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica	MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica	Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis	pycom13g23330
rosa_chinensis	RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata	RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora	Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii	Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa	Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha	Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana	Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	2 cut(s)	160, 215
AfiI	CCNNNNNNNGG	1 cut(s)	40
AjuI	GAANNNNNNNTTGG	2 cut(s)	265, 297
Alw21I	GWGCWC	1 cut(s)	304
Alw44I	GTGCAC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	206
ApaLI	GTGCAC	1 cut(s)	300
ApoI	RAATTY	1 cut(s)	228
AvaI	CYCGRG	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	304
BccI	CCATC	2 cut(s)	22, 241
BmeT110I	CYCGRG	1 cut(s)	206
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	406
BsaHI	GRCGYC	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	142, 356
BseCI	ATCGAT	1 cut(s)	406
BseGI	GGATG	3 cut(s)	14, 119, 176
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	142, 356
BseSI	GKGCMC	1 cut(s)	304
BseYI	CCCAGC	1 cut(s)	286
Bsh1285I	CGRYCG	1 cut(s)	410
BshVI	ATCGAT	1 cut(s)	406
BsiEI	CGRYCG	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	368
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	3, 291, 407
BspCNI	CTCAG	1 cut(s)	62
BspDI	ATCGAT	1 cut(s)	406
BspPI	GGATC	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	142, 356
BssMI	GATC	3 cut(s)	3, 291, 407
BssNI	GRCGYC	1 cut(s)	135
BstACI	GRCGYC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	49, 220
BstF5I	GGATG	3 cut(s)	14, 119, 176
BstKTI	GATC	3 cut(s)	6, 294, 410
BstMBI	GATC	3 cut(s)	3, 291, 407
BstMCI	CGRYCG	1 cut(s)	410
BstSLI	GKGCMC	1 cut(s)	304
BstV2I	GAAGAC	1 cut(s)	14
Bsu15I	ATCGAT	1 cut(s)	406
BsuTUI	ATCGAT	1 cut(s)	406
BtsCI	GGATG	3 cut(s)	14, 119, 176
BtsIMutI	CAGTG	3 cut(s)	57, 149, 302
ClaI	ATCGAT	1 cut(s)	406
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	159, 214
CviAII	CATG	2 cut(s)	100, 263
CviJI	RGCY	4 cut(s)	239, 251, 280, 286
CviKI_1	RGCY	4 cut(s)	239, 251, 280, 286
CviQI	GTAC	2 cut(s)	159, 214
DdeI	CTNAG	2 cut(s)	49, 220
DpnI	GATC	3 cut(s)	5, 293, 409
DpnII	GATC	3 cut(s)	3, 291, 407
Eco88I	CYCGRG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	228
FaeI	CATG	2 cut(s)	103, 266
FaiI	YATR	9 cut(s)	101, 110, 131, 196, 198, 264, 341, 424, 439
FatI	CATG	2 cut(s)	99, 262
FauNDI	CATATG	1 cut(s)	196
FokI	GGATG	2 cut(s)	106, 183
GsaI	CCCAGC	1 cut(s)	290
GsuI	CTGGAG	1 cut(s)	125
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	103, 266
HpaII	CCGG	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	1 cut(s)	412
Hpy8I	GTNNAC	1 cut(s)	302
HpyCH4V	TGCA	5 cut(s)	95, 116, 302, 313, 368
HpyF3I	CTNAG	2 cut(s)	49, 220
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	103, 266
Kzo9I	GATC	3 cut(s)	3, 291, 407
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	8 cut(s)	31, 48, 155, 178, 252, 272, 337, 347
LweI	GCATC	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	3 cut(s)	5, 293, 409
MboI	GATC	3 cut(s)	3, 291, 407
MboII	GAAGA	4 cut(s)	14, 17, 196, 426
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	2 cut(s)	228, 419
MmeI	TCCRAC	2 cut(s)	21, 205
MnlI	CCTC	3 cut(s)	58, 149, 161
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	368
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	3 cut(s)	3, 291, 407
NlaIII	CATG	2 cut(s)	103, 266
PctI	GAATGC	1 cut(s)	368
Ple19I	CGATCG	1 cut(s)	410
PspFI	CCCAGC	1 cut(s)	286
PvuI	CGATCG	1 cut(s)	410
RsaI	GTAC	2 cut(s)	160, 215
RsaNI	GTAC	2 cut(s)	159, 214
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	3 cut(s)	3, 291, 407
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	2 cut(s)	50, 366
SfaNI	GCATC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	2 cut(s)	228, 419
TaqI	TCGA	1 cut(s)	406
TasI	AATT	2 cut(s)	228, 419
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	3 cut(s)	57, 149, 309
TspDTI	ATGAA	2 cut(s)	251, 426
TspRI	CASTG	3 cut(s)	57, 149, 309
VneI	GTGCAC	1 cut(s)	300
XapI	RAATTY	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.