Rorug04G0042800

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000521
Physical Location & Seq
Reverse (-)
6704378 .. 6705013
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0042800.1

Sequence Viewer

Length: 357 bp
ATGGCAGACATCCCCAGACCTACCTCTGGCCCCCGCCGCCAGCCCAGCCGTCTCCAGCGCCGCGCTCCTCCTCCGGCCTCCCTCCAAATAAACCCCGTCGCCGACTGGAACGTCGCCATCCCCCTCCTCTCTCCTCTCGTCTCCCCCGATCGCCCGGCCGACTCCAAACCCCGTGACGACCCCCGCCTCCACCACCAGAAACTCCAGAAACCCGACCTGCCACGTCATCAGAACGCGGAGGCCGAGAAATCATCCTCGTCGTCGGCGGCGGCGGCGGTGTTTAAGAAGTGGCAGCACCCGGCGGCCCCCTTCTGCTACGAGCCTGCTCCGCCGGTCCGGCCTTTTGTTCCCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

118

Amino Acids

13.05

Weight (kDa)

10.34

Isoelectric Point (pI)

75.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis pycom13g23330
rosa_chinensis RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
Acc36I ACCTGC 1 cut(s) 225
AccII CGCG 2 cut(s) 63, 236
AcoI YGGCCR 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 26
AjiI CACGTC 1 cut(s) 224
Alw26I GTCTC 2 cut(s) 56, 145
AoxI GGCC 6 cut(s) 28, 75, 156, 240, 303, 338
ApeKI GCWGC 1 cut(s) 292
AspLEI GCGC 2 cut(s) 60, 65
AspS9I GGNCC 3 cut(s) 29, 304, 334
AsuC2I CCSGG 2 cut(s) 155, 299
AvaII GGWCC 1 cut(s) 334
BbvI GCAGC 1 cut(s) 304
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 33
BcnI CCSGG 2 cut(s) 155, 299
BcoDI GTCTC 2 cut(s) 56, 145
BfoI RGCGCY 1 cut(s) 61
BfuAI ACCTGC 1 cut(s) 225
BglI GCCNNNNNGGC 1 cut(s) 337
BisI GCNGC 7 cut(s) 37, 61, 267, 270, 273, 293, 303
BlsI GCNGC 7 cut(s) 38, 62, 268, 271, 274, 294, 304
Bme1390I CCNGG 2 cut(s) 155, 299
Bme18I GGWCC 1 cut(s) 334
BmgBI CACGTC 1 cut(s) 224
BmgT120I GGNCC 3 cut(s) 29, 304, 334
BmiI GGNNCC 2 cut(s) 31, 306
BmrFI CCNGG 2 cut(s) 155, 299
BpmI CTGGAG 2 cut(s) 38, 188
BpuMI CCSGG 2 cut(s) 155, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 110
BseGI GGATG 3 cut(s) 9, 117, 251
BseLI CCNNNNNNNGG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 110
BseRI GAGGAG 4 cut(s) 57, 60, 116, 123
BseX3I CGGCCG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 304
BseYI CCCAGC 1 cut(s) 44
Bsh1236I CGCG 2 cut(s) 63, 236
Bsh1285I CGRYCG 2 cut(s) 151, 159
BshFI GGCC 6 cut(s) 30, 77, 158, 242, 305, 340
BsiEI CGRYCG 2 cut(s) 151, 159
BsiSI CCGG 5 cut(s) 74, 155, 299, 332, 337
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 2 cut(s) 56, 145
BsmBI CGTCTC 2 cut(s) 56, 145
BsnI GGCC 6 cut(s) 30, 77, 158, 242, 305, 340
Bsp143I GATC 1 cut(s) 148
BspANI GGCC 6 cut(s) 30, 77, 158, 242, 305, 340
BspFNI CGCG 2 cut(s) 63, 236
BspLI GGNNCC 2 cut(s) 31, 306
BspMI ACCTGC 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 331
BsrI ACTGG 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 331
BssMI GATC 1 cut(s) 148
BstC8I GCNNGC 2 cut(s) 41, 324
BstF5I GGATG 3 cut(s) 9, 117, 251
BstFNI CGCG 2 cut(s) 63, 236
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 2 cut(s) 60, 65
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 2 cut(s) 56, 145
BstMBI GATC 1 cut(s) 148
BstMCI CGRYCG 2 cut(s) 151, 159
BstMWI GCNNNNNNNGC 5 cut(s) 36, 45, 272, 328, 337
BstSCI CCNGG 2 cut(s) 153, 297
BstUI CGCG 2 cut(s) 63, 236
BstV1I GCAGC 1 cut(s) 304
BstZI CGGCCG 1 cut(s) 156
BsuRI GGCC 6 cut(s) 30, 77, 158, 242, 305, 340
BtrI CACGTC 1 cut(s) 224
BtsCI GGATG 3 cut(s) 9, 117, 251
BveI ACCTGC 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 41, 324
CfoI GCGC 2 cut(s) 60, 65
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 3 cut(s) 29, 304, 334
CpoI CGGWCCG 1 cut(s) 334
CspI CGGWCCG 1 cut(s) 334
CviJI RGCY 9 cut(s) 30, 43, 48, 77, 158, 242, 305, 322, 340
CviKI_1 RGCY 9 cut(s) 30, 43, 48, 77, 158, 242, 305, 322, 340
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 156
EagI CGGCCG 1 cut(s) 156
EciI GGCGGA 1 cut(s) 318
EclXI CGGCCG 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 334
Eco52I CGGCCG 1 cut(s) 156
Esp3I CGTCTC 2 cut(s) 56, 145
FauI CCCGC 2 cut(s) 41, 191
Fnu4HI GCNGC 7 cut(s) 37, 61, 267, 270, 273, 293, 303
FokI GGATG 2 cut(s) 104, 238
Fsp4HI GCNGC 7 cut(s) 37, 61, 267, 270, 273, 293, 303
GlaI GCGC 2 cut(s) 59, 64
GluI GCNGC 7 cut(s) 37, 61, 267, 270, 273, 293, 303
GsaI CCCAGC 1 cut(s) 48
GsuI CTGGAG 2 cut(s) 38, 188
HaeII RGCGCY 1 cut(s) 61
HaeIII GGCC 6 cut(s) 30, 77, 158, 242, 305, 340
HapII CCGG 5 cut(s) 74, 155, 299, 332, 337
HhaI GCGC 2 cut(s) 60, 65
Hin6I GCGC 2 cut(s) 58, 63
HinP1I GCGC 2 cut(s) 58, 63
HinfI GANTC 1 cut(s) 161
HpaII CCGG 5 cut(s) 74, 155, 299, 332, 337
Hpy188I TCNGA 1 cut(s) 231
Hpy188III TCNNGA 1 cut(s) 205
Hpy99I CGWCG 4 cut(s) 101, 116, 262, 265
HpyAV CCTTC 1 cut(s) 319
HpyCH4IV ACGT 2 cut(s) 111, 223
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 45, 272, 328, 337
HpySE526I ACGT 2 cut(s) 111, 223
HspAI GCGC 2 cut(s) 58, 63
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 2 cut(s) 70, 331
Lsp1109I GCAGC 1 cut(s) 304
MaeII ACGT 2 cut(s) 111, 223
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MlyI GAGTC 1 cut(s) 155
MseI TTAA 1 cut(s) 282
MspI CCGG 5 cut(s) 74, 155, 299, 332, 337
MspR9I CCNGG 2 cut(s) 155, 299
MteI GCGCNGCGC 1 cut(s) 61
MvnI CGCG 2 cut(s) 63, 236
MwoI GCNNNNNNNGC 5 cut(s) 36, 45, 272, 328, 337
NciI CCSGG 2 cut(s) 155, 299
NdeII GATC 1 cut(s) 148
NlaIV GGNNCC 2 cut(s) 31, 306
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 173
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 240
PkrI GCNGC 7 cut(s) 38, 62, 268, 271, 274, 294, 304
Ple19I CGATCG 1 cut(s) 151
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 31, 306
PspPI GGNCC 3 cut(s) 29, 304, 334
PvuI CGATCG 1 cut(s) 151
Rsr2I CGGWCCG 1 cut(s) 334
RsrII CGGWCCG 1 cut(s) 334
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 7 cut(s) 37, 61, 267, 270, 273, 293, 303
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 3 cut(s) 29, 304, 334
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 155, 299
SetI ASST 5 cut(s) 22, 26, 114, 219, 226
SinI GGWCC 1 cut(s) 334
StyD4I CCNGG 2 cut(s) 153, 297
TaiI ACGT 2 cut(s) 114, 226
TauI GCSGC 6 cut(s) 39, 63, 269, 272, 275, 305
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.