Rmu_sc0005734.1_g000001

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005734.1
OG0000521
Physical Location & Seq
Forward (+)
1 .. 885
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005734.1_g000001.1.cds

Sequence Viewer

Length: 477 bp
ggtgccgggcaaccacgacttgctcgtctagcagtaggtgttgcactatgcattgttgttaccgaaggtattatggctgcttctatactgatactgggtcgaaaagtttggggatactgttacagcagtgaaaaggaagtgatcaattatgttggagaaatgcttattttggttgcgatatcccacttttttgatggacttcaatctgtgctttcaggtatcataagaggaagtggacagcagaagattggggcatatgttaatttgggagcttattatcttatgggaattcctactgcaatattattagcatttgtattccacattggaggaaagggtctttggacgggaatcattgttgcgctatttgtgcaagcactgtctcttgcaatcataatcttattcacagactgggaaaaagaagtgaagaaagcttctgatagagtatacaacgcaccaaccgcttctgatgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

158

Amino Acids

16.91

Weight (kDa)

8.59

Isoelectric Point (pI)

20.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis pycom13g23330
rosa_chinensis RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 24
AccB1I GGYRCC 1 cut(s) 2
AccI GTMKAC 1 cut(s) 447
AciI CCGC 1 cut(s) 462
AcsI RAATTY 1 cut(s) 288
AgsI TTSAA 1 cut(s) 203
AjuI GAANNNNNNNTTGG 2 cut(s) 325, 357
AluBI AGCT 2 cut(s) 272, 434
AluI AGCT 2 cut(s) 272, 434
Alw26I GTCTC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 288
AspLEI GCGC 1 cut(s) 364
AsuC2I CCSGG 1 cut(s) 7
BanI GGYRCC 1 cut(s) 2
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 188
BciVI GTATCC 1 cut(s) 107
BclI TGATCA 1 cut(s) 141
BcnI CCSGG 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 1 cut(s) 29
BfuI GTATCC 1 cut(s) 107
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 7
BmrI ACTGGG 2 cut(s) 104, 421
BmsI GCATC 1 cut(s) 460
BmuI ACTGGG 2 cut(s) 104, 421
BpuMI CCSGG 1 cut(s) 7
Bse1I ACTGG 2 cut(s) 99, 416
BseNI ACTGG 2 cut(s) 99, 416
BseXI GCAGC 1 cut(s) 64
BshNI GGYRCC 1 cut(s) 2
BsiSI CCGG 1 cut(s) 6
BsmAI GTCTC 1 cut(s) 387
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 4
BspT107I GGYRCC 1 cut(s) 2
BsrI ACTGG 2 cut(s) 99, 416
BssMI GATC 1 cut(s) 141
BssNAI GTATAC 1 cut(s) 448
Bst1107I GTATAC 1 cut(s) 448
Bst4CI ACNGT 2 cut(s) 119, 381
BstC8I GCNNGC 1 cut(s) 375
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 4 cut(s) 29, 370, 461, 470
BstSCI CCNGG 1 cut(s) 5
BstV1I GCAGC 1 cut(s) 64
BstZ17I GTATAC 1 cut(s) 448
BsuI GTATCC 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 133, 377
Cac8I GCNNGC 1 cut(s) 375
CfoI GCGC 1 cut(s) 364
CviJI RGCY 3 cut(s) 77, 272, 434
CviKI_1 RGCY 3 cut(s) 77, 272, 434
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
DrdI GACNNNNNNGTC 1 cut(s) 24
DseDI GACNNNNNNGTC 1 cut(s) 24
Eco32I GATATC 1 cut(s) 180
EcoRI GAATTC 1 cut(s) 288
EcoRV GATATC 1 cut(s) 180
EcoT22I ATGCAT 2 cut(s) 53, 475
FauNDI CATATG 1 cut(s) 256
FbaI TGATCA 1 cut(s) 141
FblI GTMKAC 1 cut(s) 447
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 363
GluI GCNGC 1 cut(s) 78
HapII CCGG 1 cut(s) 6
HhaI GCGC 1 cut(s) 364
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HindIII AAGCTT 1 cut(s) 432
HinfI GANTC 1 cut(s) 351
HpaII CCGG 1 cut(s) 6
Hpy166II GTNNAC 2 cut(s) 236, 448
Hpy188I TCNGA 2 cut(s) 439, 469
Hpy8I GTNNAC 2 cut(s) 236, 448
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 2 cut(s) 119, 381
HpyCH4V TGCA 6 cut(s) 44, 51, 299, 373, 389, 473
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 370, 461, 470
HspAI GCGC 1 cut(s) 362
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 4 cut(s) 19, 80, 201, 397
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 460
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 2 cut(s) 58, 119
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 2 cut(s) 256, 439
MluCI AATT 3 cut(s) 145, 262, 288
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 2 cut(s) 221, 323
Mph1103I ATGCAT 2 cut(s) 53, 475
MseI TTAA 1 cut(s) 261
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 7
MwoI GCNNNNNNNGC 4 cut(s) 29, 370, 461, 470
NciI CCSGG 1 cut(s) 7
NdeI CATATG 1 cut(s) 256
NdeII GATC 1 cut(s) 141
NlaIV GGNNCC 1 cut(s) 4
NsiI ATGCAT 2 cut(s) 53, 475
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PfeI GAWTC 1 cut(s) 351
PkrI GCNGC 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 7
SetI ASST 5 cut(s) 40, 70, 220, 274, 436
SfaNI GCATC 1 cut(s) 460
Sse9I AATT 3 cut(s) 145, 262, 288
SsiI CCGC 1 cut(s) 462
SspI AATATT 1 cut(s) 303
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 5
TaaI ACNGT 2 cut(s) 119, 381
TaqI TCGA 1 cut(s) 100
TasI AATT 3 cut(s) 145, 262, 288
TfiI GAWTC 1 cut(s) 351
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 2 cut(s) 133, 384
TseI GCWGC 1 cut(s) 77
TspRI CASTG 2 cut(s) 133, 384
XapI RAATTY 1 cut(s) 288
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 447
XspI CTAG 1 cut(s) 29
Zsp2I ATGCAT 2 cut(s) 53, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.