Rorug07G0310700

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000521
Physical Location & Seq
Reverse (-)
31127103 .. 31129795
2693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0310700.1

Sequence Viewer

Length: 642 bp
ATGCTCGGAGTATCCTCAGCCTCTCCAATGCTAGCCCATGATTTCGCAATACGCTTTTTCTTTACCACTCCTGATATTATAACTGTTGCACCAAATATCGGATCTCTACATGTGAATTGTTTTTCACAAAATCTGAATAGAGCAACTTGTGCACCAAGTATTTCTAAGAAGAAATGGGTATTGCATTCAACTGCAAAATTTGAAAATATGACTTTGACTGATGACGACAGGAAGACATTAGAAGCATGTCGTGATACTTTGTCTGCATTGAGTATCAGCAATGAAGAGGGAGACAAGATACTTGGGAAAGCTTTTGGTCTGATTCATTCACCCTACTGGGGTGAAGAAAGAAAAAACAAAGTTCCAAAATTTGAGATTGTATGCGAAAAGATGGACTACCTTAGGAGTTTAAACCTGTCTAACGATGATCTGGGTAAGTTGCTTAAAAAATTTCCAGAAGTTCTTGGATGTAACCTTGAACATGAGCTGAAAACCAATGTCCAAGTTTTGGAAAAGGAATGGGGAATAAAAGGAAAATCTCTTCGAAATCTCCTCCTTCGAAATCCAAGGGTGTTGGGTTACAATGTTGATTGTAAGGGAGATTGTATGGCACAATGCACCCGTTGCTGGGTTCGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

213

Amino Acids

24.11

Weight (kDa)

8.7

Isoelectric Point (pI)

29.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 130 - 195 2.4e-08 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis pycom13g23330
rosa_chinensis RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
AccB7I CCANNNNNTGG 1 cut(s) 508
AclWI GGATC 1 cut(s) 109
AcsI RAATTY 3 cut(s) 197, 368, 449
AfiI CCNNNNNNNGG 5 cut(s) 98, 338, 508, 627, 628
AflIII ACRYGT 1 cut(s) 109
AgsI TTSAA 3 cut(s) 189, 203, 479
AluBI AGCT 2 cut(s) 311, 487
AluI AGCT 2 cut(s) 311, 487
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 285
Alw44I GTGCAC 1 cut(s) 150
AlwI GGATC 1 cut(s) 109
ApaLI GTGCAC 1 cut(s) 150
ApoI RAATTY 3 cut(s) 197, 368, 449
AsuHPI GGTGA 2 cut(s) 321, 353
AsuII TTCGAA 2 cut(s) 544, 559
AsuNHI GCTAGC 1 cut(s) 31
AxyI CCTNAGG 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 154
BbsI GAAGAC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 154
BbvCI CCTCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 385
BciVI GTATCC 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 1 cut(s) 32
BfuI GTATCC 1 cut(s) 22
BmrI ACTGGG 1 cut(s) 346
BmtI GCTAGC 1 cut(s) 35
BmuI ACTGGG 1 cut(s) 346
BpiI GAAGAC 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 16
Bpu14I TTCGAA 2 cut(s) 544, 559
BsaJI CCNNGG 1 cut(s) 566
Bsc4I CCNNNNNNNGG 5 cut(s) 98, 338, 508, 627, 628
Bse1I ACTGG 1 cut(s) 341
Bse21I CCTNAGG 1 cut(s) 401
Bse3DI GCAATG 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 566
BseGI GGATG 1 cut(s) 473
BseLI CCNNNNNNNGG 5 cut(s) 98, 338, 508, 627, 628
BseMI GCAATG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 1 cut(s) 542
BseSI GKGCMC 1 cut(s) 154
BseYI CCCAGC 1 cut(s) 627
BsiHKAI GWGCWC 1 cut(s) 154
BslI CCNNNNNNNGG 5 cut(s) 98, 338, 508, 627, 628
BsmAI GTCTC 1 cut(s) 285
BsmI GAATGC 1 cut(s) 184
Bsp119I TTCGAA 2 cut(s) 544, 559
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 2 cut(s) 101, 427
BspCNI CTCAG 1 cut(s) 29
BspOI GCTAGC 1 cut(s) 35
BspPI GGATC 1 cut(s) 109
BspT104I TTCGAA 2 cut(s) 544, 559
BsrDI GCAATG 1 cut(s) 286
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 566
BssMI GATC 2 cut(s) 101, 427
BssT1I CCWWGG 1 cut(s) 566
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 2 cut(s) 279, 546
BstAPI GCANNNNNTGC 2 cut(s) 149, 624
BstBI TTCGAA 2 cut(s) 544, 559
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 3 cut(s) 16, 165, 401
BstF5I GGATG 1 cut(s) 473
BstKTI GATC 2 cut(s) 104, 430
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 2 cut(s) 101, 427
BstMWI GCNNNNNNNGC 2 cut(s) 149, 624
BstNSI RCATGY 2 cut(s) 113, 249
BstSLI GKGCMC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
Bsu36I CCTNAGG 1 cut(s) 401
BsuI GTATCC 1 cut(s) 22
BtsCI GGATG 1 cut(s) 473
Cac8I GCNNGC 1 cut(s) 33
CviAII CATG 4 cut(s) 38, 110, 246, 482
CviJI RGCY 4 cut(s) 20, 35, 311, 487
CviKI_1 RGCY 4 cut(s) 20, 35, 311, 487
DdeI CTNAG 3 cut(s) 16, 165, 401
DpnI GATC 2 cut(s) 103, 429
DpnII GATC 2 cut(s) 101, 427
DraI TTTAAA 1 cut(s) 411
Eam1104I CTCTTC 2 cut(s) 279, 546
EarI CTCTTC 2 cut(s) 279, 546
Eco130I CCWWGG 1 cut(s) 566
Eco81I CCTNAGG 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 566
ErhI CCWWGG 1 cut(s) 566
FaeI CATG 4 cut(s) 41, 113, 249, 485
FaiI YATR 8 cut(s) 39, 80, 111, 209, 247, 382, 483, 608
FatI CATG 4 cut(s) 37, 109, 245, 481
FokI GGATG 1 cut(s) 480
FspBI CTAG 1 cut(s) 32
GsaI CCCAGC 1 cut(s) 631
Hin1II CATG 4 cut(s) 41, 113, 249, 485
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 1 cut(s) 322
HphI GGTGA 2 cut(s) 321, 353
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 4 cut(s) 8, 101, 135, 321
Hpy188III TCNNGA 3 cut(s) 71, 251, 455
Hpy8I GTNNAC 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 566
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 6 cut(s) 89, 152, 184, 194, 266, 618
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 624
HpyF3I CTNAG 3 cut(s) 16, 165, 401
Hsp92II CATG 4 cut(s) 41, 113, 249, 485
Kzo9I GATC 2 cut(s) 101, 427
LpnPI CCDG 7 cut(s) 84, 214, 322, 416, 428, 468, 613
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 2 cut(s) 470, 578
MalI GATC 2 cut(s) 103, 429
MboI GATC 2 cut(s) 101, 427
MboII GAAGA 5 cut(s) 181, 244, 296, 356, 533
MflI RGATCY 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 4 cut(s) 115, 197, 368, 449
MnlI CCTC 4 cut(s) 25, 31, 280, 563
MseI TTAA 2 cut(s) 410, 444
MssI GTTTAAAC 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 184
MwoI GCNNNNNNNGC 2 cut(s) 149, 624
NdeII GATC 2 cut(s) 101, 427
NheI GCTAGC 1 cut(s) 31
NlaIII CATG 4 cut(s) 41, 113, 249, 485
NspI RCATGY 2 cut(s) 113, 249
NspV TTCGAA 2 cut(s) 544, 559
PciI ACATGT 1 cut(s) 109
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 322
PflMI CCANNNNNTGG 1 cut(s) 508
PmeI GTTTAAAC 1 cut(s) 411
PscI ACATGT 1 cut(s) 109
PsiI TTATAA 1 cut(s) 80
PspFI CCCAGC 1 cut(s) 627
PsuI RGATCY 1 cut(s) 101
SaqAI TTAA 2 cut(s) 410, 444
Sau3AI GATC 2 cut(s) 101, 427
SduI GDGCHC 1 cut(s) 154
SetI ASST 5 cut(s) 313, 402, 417, 477, 489
SfuI TTCGAA 2 cut(s) 544, 559
Sse9I AATT 4 cut(s) 115, 197, 368, 449
SspMI CTAG 1 cut(s) 32
StyI CCWWGG 1 cut(s) 566
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 3 cut(s) 544, 559, 634
TasI AATT 4 cut(s) 115, 197, 368, 449
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 2 cut(s) 410, 444
Tru9I TTAA 2 cut(s) 410, 444
TspDTI ATGAA 2 cut(s) 297, 314
Van91I CCANNNNNTGG 1 cut(s) 508
VneI GTGCAC 1 cut(s) 150
XapI RAATTY 3 cut(s) 197, 368, 449
XceI RCATGY 2 cut(s) 113, 249
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.