RchiOBHm_Chr7g0223601

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000521
Physical Location & Seq
Reverse (-)
45406482 .. 45406730
249 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20020

Sequence Viewer

Length: 249 bp
ATGGGAATGTGTAGCGCACTGGACACTTTCTGTGGTCAATCCTATGGAGCAAAACAGTATCTGATGCTTGGTATACATATGCAGAGGGCAATGCTTGTTTTTTTGCTAGTGAGAATTCCTCTTGCGATTATATGGGCCAATGCAGGAAGGATTCTTCAGTTCTTGGGTCAAGATCCAGAGATATCTGCTGCTGCCGGAGATTATGCTTGTTTGATGATACCTTGCATTTTCGCTTATGCAATCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

82

Amino Acids

8.98

Weight (kDa)

6.5

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 1 - 81 1.9e-19 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis pycom13g23330
rosa_chinensis RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 73
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 140
AlwI GGATC 1 cut(s) 167
AlwNI CAGNNNCTG 1 cut(s) 61
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 188, 191
ApoI RAATTY 1 cut(s) 114
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 175, 178
BfaI CTAG 1 cut(s) 107
BisI GCNGC 2 cut(s) 189, 192
BlsI GCNGC 2 cut(s) 190, 193
BmgT120I GGNCC 1 cut(s) 135
BmsI GCATC 1 cut(s) 54
BplI GAGNNNNNCTC 2 cut(s) 103, 135
Bse1I ACTGG 1 cut(s) 24
Bse3DI GCAATG 1 cut(s) 96
BseMI GCAATG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 2 cut(s) 175, 178
BshFI GGCC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 195
BsnI GGCC 1 cut(s) 137
Bsp143I GATC 1 cut(s) 172
BspANI GGCC 1 cut(s) 137
BspPI GGATC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 96
BsrI ACTGG 1 cut(s) 24
BssMI GATC 1 cut(s) 172
BssNAI GTATAC 1 cut(s) 74
Bst1107I GTATAC 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 57
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstV1I GCAGC 2 cut(s) 175, 178
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BstZ17I GTATAC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 137
BtsIMutI CAGTG 1 cut(s) 17
CaiI CAGNNNCTG 1 cut(s) 61
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 135
CviJI RGCY 1 cut(s) 137
CviKI_1 RGCY 1 cut(s) 137
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eco32I GATATC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 114
EcoRV GATATC 1 cut(s) 183
FaiI YATR 9 cut(s) 45, 74, 78, 80, 131, 133, 204, 237, 247
FauNDI CATATG 1 cut(s) 78
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 189, 192
Fsp4HI GCNGC 2 cut(s) 189, 192
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 16
GluI GCNGC 2 cut(s) 189, 192
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 195
HhaI GCGC 1 cut(s) 17
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 1 cut(s) 151
HpaII CCGG 1 cut(s) 195
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 2 cut(s) 170, 176
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 141
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4V TGCA 4 cut(s) 82, 143, 225, 239
HspAI GCGC 1 cut(s) 15
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 4 cut(s) 5, 129, 189, 208
Lsp1109I GCAGC 2 cut(s) 175, 178
LweI GCATC 1 cut(s) 54
MaeI CTAG 1 cut(s) 107
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 1 cut(s) 146
MflI RGATCY 1 cut(s) 172
MluCI AATT 1 cut(s) 114
MnlI CCTC 2 cut(s) 78, 129
MspI CCGG 1 cut(s) 195
NdeI CATATG 1 cut(s) 78
NdeII GATC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 2 cut(s) 190, 193
PspPI GGNCC 1 cut(s) 135
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 172
SatI GCNGC 2 cut(s) 189, 192
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 135
SetI ASST 1 cut(s) 223
SfaNI GCATC 1 cut(s) 54
Sse9I AATT 1 cut(s) 114
SspMI CTAG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 57
TasI AATT 1 cut(s) 114
TfiI GAWTC 1 cut(s) 151
TscAI CASTG 1 cut(s) 24
TseI GCWGC 2 cut(s) 188, 191
TspRI CASTG 1 cut(s) 24
XapI RAATTY 1 cut(s) 114
XmiI GTMKAC 1 cut(s) 73
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.