RLG00000000937

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
8160494 .. 8162763
2270 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000937

Sequence Viewer

Length: 1500 bp
ATGGATTTAGAAGAAGAAAGATGTGATCTTGAATCACTGTTGATTCCTAATTCTCAAGAACATGCTATTGAATCGAGAAAGGGATTCCTGAACAAGGATGAGATTTTTGAGGAAGTGAAGAAGCAGCTGTTGTTAATATGGCCGCTTGTGTCATCAAATTTCTTGCTATTTGGTATGCAAGTTATTTCAGTCATGTATGTCGGTCATCTTGGAGAGCTATCGCTCGCTGGTGCTTCAATGGCTACTTCATTCGCTTCAGTCACTGGTTTGAGCTTGATACTGGGAATGTGTAGCGCCTTGGACACTTTCTGCGGTCAGTCCTTTGGAGCAAAACAGTATCGGATGCTTGGTATACATATGCAGAGGGCAATGCTTATTCTTTTGCTTGTCAGCGTTCCTCTTGCAATTATATGGGCTAATGCAGGCAATATTCTTCAGTGCTTAGGTCAAGATCCAGAGATATCCTCTGCTGCAGGAGATTATGCTCGTTTGATGATACCTTGCATTTTTGCTTATGCTATCCTACAATGTCATGCTAGATTCTTGCAAACTCAAAGCAATGTGATTCCGATGATTGCAAGCACAGGAACTGCAACACTACTGCACTTGCTTACCTGTTGGGTTATGGTATACAAGACCAGCCTTGGATCTAGAGGTGCTGCTGTGGCAAACGCCATCACCTATTGGATCAATGCATTATTTTTGTTTATTTATGTCAGAGTTTCTCCCTCTTGCAAGAACACATGGACTGGATTCTCAAAGGAGGCCTTCCATGGAATTCCCACTTTTCTAAAACTGTCTATCCCTTCAGCTTTAATGTCCAGCTTAGAAATGCGGTCATTTGAAATGTTGGTCCTCGTATCTGGTTTGCTTCCGAATCCAAAACTTGAAACATCAGTCCTGTCAATCAGCCTTAACACATGTGCAATGGCATACATGATTCCCCTGGCATTTAGTGGGGCAGTAAGCACAAGAGTTTCAAACCAATTGGGTGCTGGGCAACCGCAACTAGCGCGTCTAGCAGCATGTGTTGCACTTTGCCTTGTTATTACTGAAGGCATTGTTGTTGCTGCTGTCATGATATTGGGTCGAAGAGTTTGGGGCTACTGTTACAGCAGTGAAAAAGAAGTTGTGAACTATGCTGCAGAAATATTGATTTTAGTTGCTATATCCCACTTTGTTGATGGGCCTCAGTCTGTTCTGTCAGGTATCATAAGAGGAAGTGGGCAGCAGAAGATTGGTGCATATGTTAATCTGGGGGCTTATTATCTTATTGGCATTCCTACTGGAGTATTCTTTGCTTTTAGCCTCCACATGGGAGGGAAGGGTCTTTGGATTGGAATTATCCTGGCGCTATGTGTGCAGTCACTGTTTCTTGCAATTATAGTCCTACGGACTGATTGGGATAAAGAAGTGAAGAAAGCATCTGATAGGGTGCACAACACAATCAGCGCGGGCGATGCATCGCAAAGCTGTTGCATAGGTGATGATCATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

500

Amino Acids

54.07

Weight (kDa)

6.78

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 48 - 208 2.9e-37 MatE
MatE PF01554 269 - 430 8.2e-27 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_4g09990 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860 FvH4_7g32860
malus_domestica MD11G1148000.v1.1 MD13G1266200.v1.1 MD14G1231800.v1.1
prunus_persica Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090100_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1 Prupe.1G090300_v2.0.a1
pyrus_communis pycom13g23330
rosa_chinensis RchiOBHm_Chr4g0403401 RchiOBHm_Chr4g0403411 RchiOBHm_Chr4g0403421 RchiOBHm_Chr4g0403461 RchiOBHm_Chr4g0403631 RchiOBHm_Chr7g0223601 RchiOBHm_Chr7g0238161
rosa_laevigata RLG00000000937 RLG00000001957 RLG00000008965 RLG00000008975 RLG00000008976 RLG00000008978
rosa_multiflora Rmu_co8335743.1_g000001 Rmu_sc0005734.1_g000001 Rmu_sc0007727.1_g000011 Rmu_sc0011775.1_g000002 Rmu_sc0011775.1_g000005 Rmu_sc0028062.1_g000002
rosa_roxburghii Rroxscaffold_3G00223300 Rroxscaffold_5G00348050 Rroxscaffold_5G00348060 Rroxscaffold_5G00348120 Rroxscaffold_5G00348240
rosa_rugosa Rorug04G0042300 Rorug04G0042400 Rorug04G0042500 Rorug04G0042600.1 Rorug04G0042700 Rorug04G0042800 Rorug04G0042900 Rorug04G0043000 Rorug04G0043100 Rorug04G0043200 Rorug04G0043300 Rorug04G0043400 Rorug04G0044700 Rorug07G0310600 Rorug07G0310700 Rorug07G0310700
rosa_samantha Rh4AG118700 Rh4AG118800 Rh4AG118900 Rh4AG119000 Rh4BG111600 Rh4BG111800 Rh4BG111900 Rh4BG112900 Rh4CG126600 Rh4CG126900 Rh4CG127800 Rh4DG111300 Rh4DG111400 Rh4DG111500 Rh7AG466500 Rh7BG352200 Rh7BG436900 Rh7CG484200 Rh7DG452600
rosa_wichuraiana Rw4G009630 Rw4G009640 Rw4G009650 Rw4G009710 Rw7G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 352, 630
AccII CGCG 2 cut(s) 1015, 1454
AciI CCGC 5 cut(s) 143, 312, 835, 1004, 1454
AclWI GGATC 3 cut(s) 446, 655, 695
AcoI YGGCCR 1 cut(s) 140
AcsI RAATTY 2 cut(s) 157, 777
AcuI CTGAAG 4 cut(s) 240, 419, 792, 1074
AfiI CCNNNNNNNGG 2 cut(s) 94, 1315
AflIII ACRYGT 1 cut(s) 920
AgsI TTSAA 6 cut(s) 32, 71, 237, 845, 890, 981
AjnI CCWGG 2 cut(s) 945, 1347
AluBI AGCT 6 cut(s) 127, 217, 273, 812, 825, 1473
AluI AGCT 6 cut(s) 127, 217, 273, 812, 825, 1473
Alw21I GWGCWC 1 cut(s) 1440
Alw44I GTGCAC 1 cut(s) 1436
AlwI GGATC 3 cut(s) 446, 655, 695
AlwNI CAGNNNCTG 3 cut(s) 263, 590, 1369
AoxI GGCC 3 cut(s) 140, 765, 1187
ApaLI GTGCAC 1 cut(s) 1436
ApeKI GCWGC 7 cut(s) 124, 470, 659, 1022, 1070, 1142, 1228
ApoI RAATTY 2 cut(s) 157, 777
AspLEI GCGC 4 cut(s) 296, 1015, 1354, 1454
AspS9I GGNCC 2 cut(s) 853, 1187
AsuHPI GGTGA 2 cut(s) 670, 1496
AvaII GGWCC 1 cut(s) 853
BaeGI GKGCMC 1 cut(s) 1440
Bbv12I GWGCWC 1 cut(s) 1440
BbvI GCAGC 7 cut(s) 136, 457, 646, 1034, 1057, 1129, 1240
BccI CCATC 2 cut(s) 683, 1178
BciT130I CCWGG 2 cut(s) 947, 1349
BclI TGATCA 1 cut(s) 1489
BfaI CTAG 4 cut(s) 537, 651, 1010, 1019
BfmI CTRYAG 2 cut(s) 471, 1143
BfoI RGCGCY 2 cut(s) 297, 1355
BisI GCNGC 8 cut(s) 125, 143, 471, 660, 1023, 1071, 1143, 1229
BlsI GCNGC 8 cut(s) 126, 144, 472, 661, 1024, 1072, 1144, 1230
Bme1390I CCNGG 2 cut(s) 947, 1349
Bme18I GGWCC 1 cut(s) 853
BmgT120I GGNCC 2 cut(s) 853, 1187
BmrFI CCNGG 2 cut(s) 947, 1349
BmrI ACTGGG 1 cut(s) 290
BmsI GCATC 4 cut(s) 333, 1433, 1450, 1472
BmuI ACTGGG 1 cut(s) 290
BplI GAGNNNNNCTC 2 cut(s) 449, 481
BpmI CTGGAG 1 cut(s) 1308
Bpu10I CCTNAGC 1 cut(s) 442
BpuEI CTTGAG 1 cut(s) 39
BsaJI CCNNGG 4 cut(s) 297, 643, 772, 945
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 1315
Bse1I ACTGG 4 cut(s) 268, 285, 754, 1291
Bse3DI GCAATG 3 cut(s) 375, 565, 933
BseBI CCWGG 2 cut(s) 947, 1349
BseDI CCNNGG 4 cut(s) 297, 643, 772, 945
BseGI GGATG 2 cut(s) 103, 348
BseLI CCNNNNNNNGG 2 cut(s) 94, 1315
BseMI GCAATG 3 cut(s) 375, 565, 933
BseMII CTCAG 1 cut(s) 1205
BseNI ACTGG 4 cut(s) 268, 285, 754, 1291
BseSI GKGCMC 1 cut(s) 1440
BseXI GCAGC 7 cut(s) 136, 457, 646, 1034, 1057, 1129, 1240
BseYI CCCAGC 1 cut(s) 995
BsgI GTGCAG 2 cut(s) 587, 1382
Bsh1236I CGCG 2 cut(s) 1015, 1454
BshFI GGCC 3 cut(s) 142, 767, 1189
BsiHKAI GWGCWC 1 cut(s) 1440
BslI CCNNNNNNNGG 2 cut(s) 94, 1315
BsmI GAATGC 1 cut(s) 1278
BsnI GGCC 3 cut(s) 142, 767, 1189
Bsp1286I GDGCHC 1 cut(s) 1440
Bsp143I GATC 5 cut(s) 25, 451, 647, 687, 1489
Bsp19I CCATGG 1 cut(s) 772
BspACI CCGC 5 cut(s) 143, 312, 835, 1004, 1454
BspANI GGCC 3 cut(s) 142, 767, 1189
BspCNI CTCAG 1 cut(s) 1204
BspFNI CGCG 2 cut(s) 1015, 1454
BspHI TCATGA 1 cut(s) 1077
BspMAI CTGCAG 2 cut(s) 475, 1147
BspPI GGATC 3 cut(s) 446, 655, 695
BsrDI GCAATG 3 cut(s) 375, 565, 933
BsrI ACTGG 4 cut(s) 268, 285, 754, 1291
BssECI CCNNGG 4 cut(s) 297, 643, 772, 945
BssMI GATC 5 cut(s) 25, 451, 647, 687, 1489
BssNAI GTATAC 2 cut(s) 353, 631
BssT1I CCWWGG 3 cut(s) 297, 643, 772
Bst1107I GTATAC 2 cut(s) 353, 631
Bst2UI CCWGG 2 cut(s) 947, 1349
Bst4CI ACNGT 5 cut(s) 39, 336, 798, 1109, 1371
Bst6I CTCTTC 1 cut(s) 1087
BstAPI GCANNNNNTGC 1 cut(s) 1031
BstC8I GCNNGC 4 cut(s) 225, 424, 580, 1456
BstDEI CTNAG 3 cut(s) 442, 826, 1191
BstDSI CCRYGG 1 cut(s) 772
BstENI CCTNNNNNAGG 1 cut(s) 92
BstF5I GGATG 2 cut(s) 103, 348
BstFNI CGCG 2 cut(s) 1015, 1454
BstH2I RGCGCY 2 cut(s) 297, 1355
BstHHI GCGC 4 cut(s) 296, 1015, 1354, 1454
BstKTI GATC 5 cut(s) 28, 454, 650, 690, 1492
BstMBI GATC 5 cut(s) 25, 451, 647, 687, 1489
BstMWI GCNNNNNNNGC 7 cut(s) 239, 665, 1012, 1019, 1031, 1360, 1460
BstNI CCWGG 2 cut(s) 947, 1349
BstNSI RCATGY 3 cut(s) 65, 924, 1029
BstSCI CCNGG 2 cut(s) 945, 1347
BstSFI CTRYAG 2 cut(s) 471, 1143
BstSLI GKGCMC 1 cut(s) 1440
BstUI CGCG 2 cut(s) 1015, 1454
BstV1I GCAGC 7 cut(s) 136, 457, 646, 1034, 1057, 1129, 1240
BstX2I RGATCY 2 cut(s) 451, 647
BstYI RGATCY 2 cut(s) 451, 647
BstZ17I GTATAC 2 cut(s) 353, 631
BsuRI GGCC 3 cut(s) 142, 767, 1189
BtgI CCRYGG 1 cut(s) 772
BtgZI GCGATG 2 cut(s) 1449, 1473
BtsCI GGATG 2 cut(s) 103, 348
BtsI GCAGTG 1 cut(s) 1123
BtsIMutI CAGTG 5 cut(s) 35, 261, 443, 1123, 1367
Cac8I GCNNGC 4 cut(s) 225, 424, 580, 1456
CaiI CAGNNNCTG 3 cut(s) 263, 590, 1369
CciI TCATGA 1 cut(s) 1077
CfoI GCGC 4 cut(s) 296, 1015, 1354, 1454
Cfr13I GGNCC 2 cut(s) 853, 1187
CseI GACGC 1 cut(s) 1004
DdeI CTNAG 3 cut(s) 442, 826, 1191
DpnI GATC 5 cut(s) 27, 453, 649, 689, 1491
DpnII GATC 5 cut(s) 25, 451, 647, 687, 1489
EaeI YGGCCR 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 1087
EarI CTCTTC 1 cut(s) 1087
Eco130I CCWWGG 3 cut(s) 297, 643, 772
Eco147I AGGCCT 1 cut(s) 767
Eco32I GATATC 1 cut(s) 462
Eco47I GGWCC 1 cut(s) 853
Eco57I CTGAAG 4 cut(s) 240, 419, 792, 1074
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoRI GAATTC 1 cut(s) 777
EcoRII CCWGG 2 cut(s) 945, 1347
EcoRV GATATC 1 cut(s) 462
EcoT14I CCWWGG 3 cut(s) 297, 643, 772
EcoT22I ATGCAT 2 cut(s) 697, 1465
ErhI CCWWGG 3 cut(s) 297, 643, 772
FalI AAGNNNNNCTT 2 cut(s) 752, 784
FauI CCCGC 1 cut(s) 1447
FauNDI CATATG 3 cut(s) 357, 1246, 1494
FbaI TGATCA 1 cut(s) 1489
FblI GTMKAC 2 cut(s) 352, 630
Fnu4HI GCNGC 8 cut(s) 125, 143, 471, 660, 1023, 1071, 1143, 1229
FokI GGATG 2 cut(s) 110, 355
Fsp4HI GCNGC 8 cut(s) 125, 143, 471, 660, 1023, 1071, 1143, 1229
FspBI CTAG 4 cut(s) 537, 651, 1010, 1019
GlaI GCGC 4 cut(s) 295, 1014, 1353, 1453
GluI GCNGC 8 cut(s) 125, 143, 471, 660, 1023, 1071, 1143, 1229
GsaI CCCAGC 1 cut(s) 999
GsuI CTGGAG 1 cut(s) 1308
HaeII RGCGCY 2 cut(s) 297, 1355
HaeIII GGCC 3 cut(s) 142, 767, 1189
HgaI GACGC 1 cut(s) 1004
HhaI GCGC 4 cut(s) 296, 1015, 1354, 1454
Hin6I GCGC 4 cut(s) 294, 1013, 1352, 1452
HinP1I GCGC 4 cut(s) 294, 1013, 1352, 1452
HinfI GANTC 9 cut(s) 32, 43, 71, 84, 540, 565, 753, 877, 940
HphI GGTGA 2 cut(s) 670, 1496
Hpy166II GTNNAC 4 cut(s) 353, 631, 1135, 1438
Hpy188I TCNGA 5 cut(s) 342, 570, 719, 876, 1429
Hpy188III TCNNGA 8 cut(s) 29, 56, 75, 88, 449, 455, 651, 1078
Hpy8I GTNNAC 4 cut(s) 353, 631, 1135, 1438
HpyAV CCTTC 4 cut(s) 778, 816, 1049, 1318
HpyCH4III ACNGT 5 cut(s) 39, 336, 798, 1109, 1371
HpyF10VI GCNNNNNNNGC 7 cut(s) 239, 665, 1012, 1019, 1031, 1360, 1460
HpyF3I CTNAG 3 cut(s) 442, 826, 1191
HspAI GCGC 4 cut(s) 294, 1013, 1352, 1452
Ksp22I TGATCA 1 cut(s) 1489
Kzo9I GATC 5 cut(s) 25, 451, 647, 687, 1489
LmnI GCTCC 1 cut(s) 326
Lsp1109I GCAGC 7 cut(s) 136, 457, 646, 1034, 1057, 1129, 1240
LweI GCATC 4 cut(s) 333, 1433, 1450, 1472
MaeI CTAG 4 cut(s) 537, 651, 1010, 1019
MaeIII GTNAC 3 cut(s) 259, 1109, 1365
MalI GATC 5 cut(s) 27, 453, 649, 689, 1491
MboI GATC 5 cut(s) 25, 451, 647, 687, 1489
MboII GAAGA 7 cut(s) 23, 26, 130, 425, 1104, 1246, 1429
MfeI CAATTG 1 cut(s) 986
MflI RGATCY 2 cut(s) 451, 647
MhlI GDGCHC 1 cut(s) 1440
MluCI AATT 7 cut(s) 49, 157, 405, 777, 986, 1341, 1380
Mph1103I ATGCAT 2 cut(s) 697, 1465
MseI TTAA 4 cut(s) 134, 815, 915, 1251
MspA1I CMGCKG 1 cut(s) 127
MspR9I CCNGG 2 cut(s) 947, 1349
MunI CAATTG 1 cut(s) 986
Mva1269I GAATGC 1 cut(s) 1278
MvaI CCWGG 2 cut(s) 947, 1349
MvnI CGCG 2 cut(s) 1015, 1454
MwoI GCNNNNNNNGC 7 cut(s) 239, 665, 1012, 1019, 1031, 1360, 1460
NcoI CCATGG 1 cut(s) 772
NdeI CATATG 3 cut(s) 357, 1246, 1494
NdeII GATC 5 cut(s) 25, 451, 647, 687, 1489
NmuCI GTSAC 2 cut(s) 259, 1365
NsiI ATGCAT 2 cut(s) 697, 1465
NspI RCATGY 3 cut(s) 65, 924, 1029
PagI TCATGA 1 cut(s) 1077
PceI AGGCCT 1 cut(s) 767
PciI ACATGT 1 cut(s) 920
PctI GAATGC 1 cut(s) 1278
PfeI GAWTC 9 cut(s) 32, 43, 71, 84, 540, 565, 753, 877, 940
PkrI GCNGC 8 cut(s) 126, 144, 472, 661, 1024, 1072, 1144, 1230
PscI ACATGT 1 cut(s) 920
Psp6I CCWGG 2 cut(s) 945, 1347
PspFI CCCAGC 1 cut(s) 995
PspGI CCWGG 2 cut(s) 945, 1347
PspPI GGNCC 2 cut(s) 853, 1187
PstI CTGCAG 2 cut(s) 475, 1147
PstNI CAGNNNCTG 3 cut(s) 263, 590, 1369
PsuI RGATCY 2 cut(s) 451, 647
PvuII CAGCTG 1 cut(s) 127
SaqAI TTAA 4 cut(s) 134, 815, 915, 1251
SatI GCNGC 8 cut(s) 125, 143, 471, 660, 1023, 1071, 1143, 1229
Sau3AI GATC 5 cut(s) 25, 451, 647, 687, 1489
Sau96I GGNCC 2 cut(s) 853, 1187
ScrFI CCNGG 2 cut(s) 947, 1349
SduI GDGCHC 1 cut(s) 1440
SfaNI GCATC 4 cut(s) 333, 1433, 1450, 1472
SfcI CTRYAG 2 cut(s) 471, 1143
SinI GGWCC 1 cut(s) 853
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 7 cut(s) 49, 157, 405, 777, 986, 1341, 1380
SseBI AGGCCT 1 cut(s) 767
SsiI CCGC 5 cut(s) 143, 312, 835, 1004, 1454
SspI AATATT 2 cut(s) 430, 1152
SspMI CTAG 4 cut(s) 537, 651, 1010, 1019
StuI AGGCCT 1 cut(s) 767
StyD4I CCNGG 2 cut(s) 945, 1347
StyI CCWWGG 3 cut(s) 297, 643, 772
TaaI ACNGT 5 cut(s) 39, 336, 798, 1109, 1371
TaqI TCGA 2 cut(s) 74, 1090
TaqII GACCGA 1 cut(s) 191
TasI AATT 7 cut(s) 49, 157, 405, 777, 986, 1341, 1380
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 9 cut(s) 32, 43, 71, 84, 540, 565, 753, 877, 940
Tru1I TTAA 4 cut(s) 134, 815, 915, 1251
Tru9I TTAA 4 cut(s) 134, 815, 915, 1251
TscAI CASTG 5 cut(s) 42, 268, 443, 1123, 1374
TseFI GTSAC 2 cut(s) 259, 1365
TseI GCWGC 7 cut(s) 124, 470, 659, 1022, 1070, 1142, 1228
Tsp45I GTSAC 2 cut(s) 259, 1365
TspDTI ATGAA 1 cut(s) 237
TspGWI ACGGA 1 cut(s) 1408
TspRI CASTG 5 cut(s) 42, 268, 443, 1123, 1374
VneI GTGCAC 1 cut(s) 1436
VpaK11BI GGWCC 1 cut(s) 853
XagI CCTNNNNNAGG 1 cut(s) 92
XapI RAATTY 2 cut(s) 157, 777
XbaI TCTAGA 1 cut(s) 650
XceI RCATGY 3 cut(s) 65, 924, 1029
XcmI CCANNNNNNNNNTGG 2 cut(s) 992, 1181
XmiI GTMKAC 2 cut(s) 352, 630
XspI CTAG 4 cut(s) 537, 651, 1010, 1019
Zsp2I ATGCAT 2 cut(s) 697, 1465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.