Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001544

Physical Location & Seq

Genomic Coordinates Reverse (-)

9697133 .. 9700090

Gene Structure 2958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G167100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGCTTCCTGCTCTACCTTCAACCTTTCACCAAGTTCAAAACCCACAAAACCCTTACCCCATTATCTCCTAAAACCACTGATTCACGAGCCTGAAACCGAGACCCGAACCCAAATCCAAACCCCTTACCCAAAGCTCATAGTCACTGGTCCTTCCAAGCTCTCCGGCCGTGTACCCATCAGCGGCTCCAAGAACTCAGCTTTACCAATTCTTGCAGCGACCCTTTGCTGCTCAGGCACTTCAAAGATTCACAATGTGCCCAATTTGTTCGATACCCGCACAATGGCTTCGGTTTTAGCTTCTCTTGGAGCCAAAGTTGAAGTCTTTAATAATGAAATGTTGGTTAACACTGATGGGGTTGACTCAGTTGAGCCTAATTCGGATGAAATTCGTAAGATAAGAGGTGGGTTTTTCGTCATTGGCCCGTTGGTAGCCCGATTCGGCGAGGCTGTGGTTGCATTGCCCGGTGGCTGCAATATCGGGACTCGACCGGTGGACCTGTACATTAGAGGTCTTCAAGCTCTTGGTGCTGTTGTTGAGTTGAGGGATGGGAAAGTTCAGGCATATGCTGCAAACGGAAGAGGATTAGTTGGAGGAAGTTTCCAACTTGATTACGCAAGTGTTGGGGCAACAGAAACTCTTATGATGGCTGCATGTATGGCTGATGGAATGACTGTACTATCCAATGTTGCCAGAGAACCAGAGGTGGTGGATCTTGCTCGGTTTCTTAATGACAGTGGGGCCTGTGTGGAAGGAGCAGGAAGTAACCAGCTTGTTATCAAAGGGAAACCCCTGTTGCATGGTTCTGAATGTGTTATTGCTGCTGATCGTATTGAAGCAGGCACATTTATGCTTGCTGCAGCTATTACTCGCTCATGCATCTCAATATCACCTGTCATACCTTGCCAAATGTCCTGTTTAATACACAAACTCTCGGCTGCTGGTTGCAAAATCAGGCAATACTCTCATGATACCTTGGAAGTTTCAGCAGTTTCTAGATGTGGGGGTGAAAATTTGCAAAGCTTTGAGGTTAAGACAGGCCCATATCCTGGGTTTCCTACAGATCTTCAACCGCAAATAATGGCTCTGCTGACCACGTGCAATGGTTTAAGTCCTGTAGAGGAATCTGTATTTGACAAACGCATGGGTCATGTAAGTGAACTGCTAAAGCTTGGAGCAAAAATTCAGGTCTGTGCAAGCACTGCTCTGGTCTTTGGGAAAGATAATGGAAGTGTCTTGTCTGGTTCTTCCCTTGTTGCAAATGACATTAGGGGTGGGATGTCACTGGTATTAGCTGGATTGGCTGCAGAAGGAACTACGGATATCAGTGGCGTTGCTCATATTGACCGTGGTTATGAGAACTTAGATATGAAACTTCATTCACTGGGAGCCGATGTCAAAAGATTAATGCCTCTGGCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

475

Amino Acids

49.76

Weight (kDa)

6.51

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001544)

Species	Orthologous Gene IDs
malus_domestica	MD03G1241800.v1.1
prunus_persica	Prupe.4G167100_v2.0.a1 Prupe.4G167100_v2.0.a1
pyrus_communis	pycom03g18890
rosa_chinensis	RchiOBHm_Chr5g0030831 RchiOBHm_Chr5g0031211 RchiOBHm_Chr5g0031411 RchiOBHm_Chr7g0194341
rosa_laevigata	RLG00000002889 RLG00000009452 RLG00000010063 RLG00000020938 RLG00000025330 RLG00000029419 RLG00000033292
rosa_multiflora	Rmu_sc0002426.1_g000013 Rmu_sc0002505.1_g000024 Rmu_sc0004790.1_g000012 Rmu_sc0005543.1_g000001 Rmu_sc0014478.1_g000005 Rmu_sc0014478.1_g000006
rosa_roxburghii	Rroxscaffold_1G00039380 Rroxscaffold_1G00049410 Rroxscaffold_4G00315890
rosa_rugosa	Rorug05G0122800 Rorug05G0125100
rosa_samantha	Rh1BG113100 Rh1CG264100 Rh2BG469500 Rh2DG478900 Rh5AG213800 Rh5AG217800 Rh5BG213000 Rh5BG213100 Rh5BG217500 Rh5CG236700 Rh5CG239700 Rh5CG241300 Rh5DG217500 Rh5DG221000 Rh5DG222900 Rh5DG281900 Rh5DG502600 Rh6BG212100 Rh7AG059300 Rh7CG251400
rosa_wichuraiana	Rw0G012990 Rw0G015960 Rw5G019540 Rw5G019900 Rw5G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1049
AciI	CCGC	3 cut(s)	183, 277, 1073
AclWI	GGATC	1 cut(s)	720
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	3 cut(s)	387, 1012, 1182
AcvI	CACGTG	1 cut(s)	1098
AdeI	CACNNNGTG	1 cut(s)	256
AfaI	GTAC	3 cut(s)	174, 503, 678
AfiI	CCNNNNNNNGG	3 cut(s)	182, 283, 1049
AgeI	ACCGGT	1 cut(s)	490
AgsI	TTSAA	7 cut(s)	22, 39, 243, 320, 518, 836, 1070
AjnI	CCWGG	1 cut(s)	1048
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	720
AoxI	GGCC	4 cut(s)	166, 421, 741, 1039
ApoI	RAATTY	3 cut(s)	387, 1012, 1182
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
AseI	ATTAAT	1 cut(s)	1406
AsiGI	ACCGGT	1 cut(s)	490
AspS9I	GGNCC	5 cut(s)	149, 422, 496, 741, 1040
AsuC2I	CCSGG	1 cut(s)	465
AsuHPI	GGTGA	3 cut(s)	21, 882, 1019
AvaII	GGWCC	2 cut(s)	149, 496
BaeGI	GKGCMC	1 cut(s)	261
BauI	CACGAG	1 cut(s)	86
BbrPI	CACGTG	1 cut(s)	1098
BbsI	GAAGAC	1 cut(s)	506
BccI	CCATC	5 cut(s)	185, 347, 542, 640, 659
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	1050
BcnI	CCSGG	1 cut(s)	465
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	996
BfmI	CTRYAG	4 cut(s)	858, 1059, 1116, 1305
BglII	AGATCT	1 cut(s)	1063
Bme1390I	CCNGG	2 cut(s)	465, 1050
Bme18I	GGWCC	2 cut(s)	149, 496
BmgT120I	GGNCC	5 cut(s)	149, 422, 496, 741, 1040
BmiI	GGNNCC	4 cut(s)	187, 310, 742, 1390
BmrFI	CCNGG	2 cut(s)	465, 1050
BmrI	ACTGGG	1 cut(s)	1394
BmsI	GCATC	1 cut(s)	888
BmuI	ACTGGG	1 cut(s)	1394
BpiI	GAAGAC	1 cut(s)	506
Bpu10I	CCTNAGC	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	465
BsaAI	YACGTR	1 cut(s)	1098
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	975, 1049, 1348
BsaWI	WCCGGW	1 cut(s)	490
BsaXI	ACNNNNNCTCC	4 cut(s)	300, 330, 1380, 1410
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 283, 1049
Bse118I	RCCGGY	1 cut(s)	490
Bse1I	ACTGG	3 cut(s)	151, 1290, 1389
Bse3DI	GCAATG	2 cut(s)	458, 1108
BseBI	CCWGG	1 cut(s)	1050
BseDI	CCNNGG	3 cut(s)	975, 1049, 1348
BseGI	GGATG	3 cut(s)	388, 553, 1284
BseLI	CCNNNNNNNGG	3 cut(s)	182, 283, 1049
BseMI	GCAATG	2 cut(s)	458, 1108
BseMII	CTCAG	3 cut(s)	210, 246, 378
BseNI	ACTGG	3 cut(s)	151, 1290, 1389
BseSI	GKGCMC	1 cut(s)	261
BseX3I	CGGCCG	1 cut(s)	166
Bsh1285I	CGRYCG	2 cut(s)	169, 491
BshFI	GGCC	4 cut(s)	168, 423, 743, 1041
BshTI	ACCGGT	1 cut(s)	490
BsiEI	CGRYCG	2 cut(s)	169, 491
BsiSI	CCGG	3 cut(s)	165, 465, 491
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	3 cut(s)	182, 283, 1049
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	496
BsnI	GGCC	4 cut(s)	168, 423, 743, 1041
Bso31I	GGTCTC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp1407I	TGTACA	1 cut(s)	501
Bsp143I	GATC	3 cut(s)	712, 826, 1063
BspACI	CCGC	3 cut(s)	183, 277, 1073
BspANI	GGCC	4 cut(s)	168, 423, 743, 1041
BspCNI	CTCAG	3 cut(s)	209, 245, 377
BspHI	TCATGA	1 cut(s)	967
BspLI	GGNNCC	4 cut(s)	187, 310, 742, 1390
BspMAI	CTGCAG	2 cut(s)	862, 1309
BspPI	GGATC	1 cut(s)	720
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	458, 1108
BsrFI	RCCGGY	1 cut(s)	490
BsrGI	TGTACA	1 cut(s)	501
BsrI	ACTGG	3 cut(s)	151, 1290, 1389
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	3 cut(s)	975, 1049, 1348
BssMI	GATC	3 cut(s)	712, 826, 1063
BssSI	CACGAG	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	975
Bst2BI	CACGAG	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	1050
Bst4CI	ACNGT	3 cut(s)	676, 737, 1349
Bst6I	CTCTTC	1 cut(s)	574
BstAPI	GCANNNNNTGC	2 cut(s)	569, 1202
BstAUI	TGTACA	1 cut(s)	501
BstBAI	YACGTR	1 cut(s)	1098
BstC8I	GCNNGC	3 cut(s)	841, 855, 1198
BstDEI	CTNAG	4 cut(s)	196, 232, 364, 1363
BstDSI	CCRYGG	1 cut(s)	1348
BstF5I	GGATG	3 cut(s)	388, 553, 1284
BstKTI	GATC	3 cut(s)	715, 829, 1066
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	3 cut(s)	712, 826, 1063
BstMCI	CGRYCG	2 cut(s)	169, 491
BstMWI	GCNNNNNNNGC	7 cut(s)	234, 455, 527, 569, 659, 1202, 1301
BstNI	CCWGG	1 cut(s)	1050
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	2 cut(s)	463, 1048
BstSFI	CTRYAG	4 cut(s)	858, 1059, 1116, 1305
BstSLI	GKGCMC	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	506
BstX2I	RGATCY	2 cut(s)	712, 1063
BstYI	RGATCY	2 cut(s)	712, 1063
BstZI	CGGCCG	1 cut(s)	166
BsuRI	GGCC	4 cut(s)	168, 423, 743, 1041
BtgI	CCRYGG	1 cut(s)	1348
BtsCI	GGATG	3 cut(s)	388, 553, 1284
BtsI	GCAGTG	1 cut(s)	1200
BtsIMutI	CAGTG	8 cut(s)	77, 144, 348, 742, 1200, 1283, 1333, 1382
Cac8I	GCNNGC	3 cut(s)	841, 855, 1198
CciI	TCATGA	1 cut(s)	967
Cfr10I	RCCGGY	1 cut(s)	490
Cfr13I	GGNCC	5 cut(s)	149, 422, 496, 741, 1040
Csp6I	GTAC	3 cut(s)	173, 502, 677
CspAI	ACCGGT	1 cut(s)	490
CviAII	CATG	6 cut(s)	654, 800, 876, 968, 1144, 1151
CviQI	GTAC	3 cut(s)	173, 502, 677
DdeI	CTNAG	4 cut(s)	196, 232, 364, 1363
DpnI	GATC	3 cut(s)	714, 828, 1065
DpnII	GATC	3 cut(s)	712, 826, 1063
DraIII	CACNNNGTG	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	166
EagI	CGGCCG	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	574
EarI	CTCTTC	1 cut(s)	574
EclXI	CGGCCG	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	975
Eco31I	GGTCTC	1 cut(s)	95
Eco32I	GATATC	1 cut(s)	1324
Eco47I	GGWCC	2 cut(s)	149, 496
Eco52I	CGGCCG	1 cut(s)	166
Eco72I	CACGTG	1 cut(s)	1098
EcoO109I	RGGNCCY	1 cut(s)	741
EcoRII	CCWGG	1 cut(s)	1048
EcoRV	GATATC	1 cut(s)	1324
EcoT14I	CCWWGG	1 cut(s)	975
EcoT22I	ATGCAT	1 cut(s)	881
ErhI	CCWWGG	1 cut(s)	975
FaeI	CATG	6 cut(s)	657, 803, 879, 971, 1147, 1154
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	6 cut(s)	653, 799, 875, 967, 1143, 1150
FauI	CCCGC	1 cut(s)	284
FauNDI	CATATG	1 cut(s)	565
FokI	GGATG	3 cut(s)	395, 560, 1291
FspBI	CTAG	1 cut(s)	996
HaeIII	GGCC	4 cut(s)	168, 423, 743, 1041
HapII	CCGG	3 cut(s)	165, 465, 491
Hin1II	CATG	6 cut(s)	657, 803, 879, 971, 1147, 1154
HincII	GTYRAC	2 cut(s)	346, 361
HindII	GTYRAC	2 cut(s)	346, 361
HindIII	AAGCTT	2 cut(s)	1021, 1169
HinfI	GANTC	6 cut(s)	82, 247, 362, 438, 484, 1124
HpaI	GTTAAC	1 cut(s)	346
HpaII	CCGG	3 cut(s)	165, 465, 491
HphI	GGTGA	3 cut(s)	21, 882, 1019
Hpy166II	GTNNAC	5 cut(s)	173, 346, 361, 496, 1160
Hpy188I	TCNGA	2 cut(s)	382, 808
Hpy188III	TCNNGA	4 cut(s)	86, 481, 968, 996
Hpy8I	GTNNAC	5 cut(s)	173, 346, 361, 496, 1160
HpyAV	CCTTC	4 cut(s)	28, 162, 746, 1304
HpyCH4III	ACNGT	3 cut(s)	676, 737, 1349
HpyCH4IV	ACGT	1 cut(s)	1097
HpyF10VI	GCNNNNNNNGC	7 cut(s)	234, 455, 527, 569, 659, 1202, 1301
HpyF3I	CTNAG	4 cut(s)	196, 232, 364, 1363
HpySE526I	ACGT	1 cut(s)	1097
Hsp92II	CATG	6 cut(s)	657, 803, 879, 971, 1147, 1154
KspAI	GTTAAC	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	712, 826, 1063
LmnI	GCTCC	5 cut(s)	191, 308, 755, 1175, 1388
LweI	GCATC	1 cut(s)	888
MaeI	CTAG	1 cut(s)	996
MaeII	ACGT	1 cut(s)	1097
MaeIII	GTNAC	3 cut(s)	142, 764, 1281
MalI	GATC	3 cut(s)	714, 828, 1065
MboI	GATC	3 cut(s)	712, 826, 1063
MboII	GAAGA	4 cut(s)	506, 591, 1058, 1239
MflI	RGATCY	2 cut(s)	712, 1063
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	6 cut(s)	207, 262, 376, 387, 1012, 1182
MlyI	GAGTC	2 cut(s)	356, 478
MmeI	TCCRAC	2 cut(s)	571, 628
Mph1103I	ATGCAT	1 cut(s)	881
MseI	TTAA	7 cut(s)	327, 345, 729, 920, 1032, 1109, 1406
MslI	CAYNNNNRTG	2 cut(s)	848, 1155
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	3 cut(s)	165, 465, 491
MspR9I	CCNGG	2 cut(s)	465, 1050
MvaI	CCWGG	1 cut(s)	1050
MwoI	GCNNNNNNNGC	7 cut(s)	234, 455, 527, 569, 659, 1202, 1301
NciI	CCSGG	1 cut(s)	465
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	3 cut(s)	712, 826, 1063
NlaIII	CATG	6 cut(s)	657, 803, 879, 971, 1147, 1154
NlaIV	GGNNCC	4 cut(s)	187, 310, 742, 1390
NmeAIII	GCCGAG	1 cut(s)	914
NmuCI	GTSAC	2 cut(s)	142, 1281
NsiI	ATGCAT	1 cut(s)	881
NspI	RCATGY	1 cut(s)	657
PagI	TCATGA	1 cut(s)	967
PfeI	GAWTC	4 cut(s)	82, 247, 438, 1124
PflMI	CCANNNNNTGG	1 cut(s)	1049
PinAI	ACCGGT	1 cut(s)	490
PleI	GAGTC	2 cut(s)	356, 478
PmaCI	CACGTG	1 cut(s)	1098
PmlI	CACGTG	1 cut(s)	1098
PpsI	GAGTC	2 cut(s)	356, 478
Ppu21I	YACGTR	1 cut(s)	1098
PshBI	ATTAAT	1 cut(s)	1406
Psp6I	CCWGG	1 cut(s)	1048
PspCI	CACGTG	1 cut(s)	1098
PspGI	CCWGG	1 cut(s)	1048
PspN4I	GGNNCC	4 cut(s)	187, 310, 742, 1390
PspPI	GGNCC	5 cut(s)	149, 422, 496, 741, 1040
PstI	CTGCAG	2 cut(s)	862, 1309
PsuI	RGATCY	2 cut(s)	712, 1063
RsaI	GTAC	3 cut(s)	174, 503, 678
RsaNI	GTAC	3 cut(s)	173, 502, 677
RseI	CAYNNNNRTG	2 cut(s)	848, 1155
SaqAI	TTAA	7 cut(s)	327, 345, 729, 920, 1032, 1109, 1406
Sau3AI	GATC	3 cut(s)	712, 826, 1063
Sau96I	GGNCC	5 cut(s)	149, 422, 496, 741, 1040
SchI	GAGTC	2 cut(s)	356, 478
ScrFI	CCNGG	2 cut(s)	465, 1050
SduI	GDGCHC	1 cut(s)	261
SfaNI	GCATC	1 cut(s)	888
SfcI	CTRYAG	4 cut(s)	858, 1059, 1116, 1305
SinI	GGWCC	2 cut(s)	149, 496
SmiMI	CAYNNNNRTG	2 cut(s)	848, 1155
Sse9I	AATT	6 cut(s)	207, 262, 376, 387, 1012, 1182
SsiI	CCGC	3 cut(s)	183, 277, 1073
SspMI	CTAG	1 cut(s)	996
StyD4I	CCNGG	2 cut(s)	463, 1048
StyI	CCWWGG	1 cut(s)	975
TaaI	ACNGT	3 cut(s)	676, 737, 1349
TaiI	ACGT	1 cut(s)	1100
TaqI	TCGA	2 cut(s)	270, 487
TasI	AATT	6 cut(s)	207, 262, 376, 387, 1012, 1182
TatI	WGTACW	2 cut(s)	501, 676
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	4 cut(s)	82, 247, 438, 1124
Tru1I	TTAA	7 cut(s)	327, 345, 729, 920, 1032, 1109, 1406
Tru9I	TTAA	7 cut(s)	327, 345, 729, 920, 1032, 1109, 1406
TscAI	CASTG	8 cut(s)	84, 151, 355, 742, 1207, 1290, 1333, 1389
TseFI	GTSAC	2 cut(s)	142, 1281
Tsp45I	GTSAC	2 cut(s)	142, 1281
TspDTI	ATGAA	4 cut(s)	348, 399, 1367, 1385
TspGWI	ACGGA	2 cut(s)	591, 1334
TspRI	CASTG	8 cut(s)	84, 151, 355, 742, 1207, 1290, 1333, 1389
Van91I	CCANNNNNTGG	1 cut(s)	1049
VpaK11BI	GGWCC	2 cut(s)	149, 496
VspI	ATTAAT	1 cut(s)	1406
XapI	RAATTY	3 cut(s)	387, 1012, 1182
XbaI	TCTAGA	1 cut(s)	995
XceI	RCATGY	1 cut(s)	657
XspI	CTAG	1 cut(s)	996
Zsp2I	ATGCAT	1 cut(s)	881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.