pycom03g18890

EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
19717547 .. 19720056
2510 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g18890.6

Sequence Viewer

Length: 1461 bp
ATGAAGAACTTGGCGGCAACTCTTCACATCTCACAAATGGCTTCCTTCTCCACCTTGAACCTTTCACCAAGTCCAAAACCCACAAAACCATTACCCCATTCTCTTCTAAAACCACTGATTCCGGCACCCGAAATCGATACCCGAACTCAAATCCAAACCCCTTACCCGAAGCTCATACTCACCGGCCCTTCCCAGCTCTCCGGCCATGTACCCATCAGCGGCTCCAAGAACTCAGCTTTGCCGATTCTGGCGGCGACCCTTTGCTGCTCAGGCACTTCAAGGATTCAAAACGTGCCCGATTTGTTCGATACTCGCACAATGGCTTCGGTTTTAGTGTCTCTTGGAGCTAAAGTTGAAGTCTTGGACAACGAAATGTTGGTTAACACCAATGGGGTTGGCTCAGTTGAGCCTAATGCGGATGAAATTCAAAAGATCAGAGGTGGGTTTTTCGTCATTGGGCCGTTGGTTGCCCGATTCGGGGAGGCGGTGGTTGCATTACCCGGTGGCTGCAATATTGGGGCTCGACCAGTGGACCTATACATTCGGGGTCTTCAATGTCTTGGCGCTGTTGTTGAATTGAGGGATGGGAAAGTTCAGGCATATGCCGCAAATGGAAGAGGATTAGTTGGAGGAAGTTTCCAACTTGATTACCCGAGTGTGGGGGCAACGGAAACTCTTATGATGGCTGCATGTATGGCTGATGGAAAAACTGTACTGTCCAATGTTGCCAGAGAACCAGAGGTGGTTGATCTTGCTAGGTTTCTTACCAACTGTGGGGCCTGTGTGGATGGAGCAGGCAGCAACAAGCTTGTTATCAAGGGAAAATCCCAGTTGCATGGTTGTGAATGCGTTGTTGCACCTGATCGTATTGAAGCAGGTACATTTATGCTTGCTGCAGCTATTACTCGCTCATGCATCTCGATATCACCTGTCATACCTTGCCAAATGTCCTCTTTGATACACAAACTATCGGCCGTTGGTTGCAAAATCAAGAAATGTTCTCATGATACCTTGGAAGTTTCAGCAGTGTCCGGACATGGGGGTGCAAATTTGCGAAGCGTTGTGGTTAAGACAGGCCCATATCCTGGGTTTCCCACAGACCTCCAACCACAAATAATGGCTTTTCTGACCACGTGCAATGGTTTAAGTTCTGTAGAGGAATCTGTTTTTGACAAACGCATGAGTCATGTAAGCGAACTGCTAAAGCTTGGAGCAAAGATTCAGGTCTGTGCGAGCACTGCTCTGGTTTATGGGAAAGACAATGGAAGTGTCTTGAATGGTTCCTCGCTTGTTGCAAATGACATTAGGGGTGGGATGTCACTGGTATTAGCTGGGTTGGCCGCAGAAGGCACTACAGAGATCAGCGGTGTTGCTCATATTGACCGTGGTTATGAGAATTTAGATATGAAACTTCGTTTTCTGGGATCTGATGTCAAAAGATTAATGCCTCTTGCATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

487

Amino Acids

50.82

Weight (kDa)

8.3

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 866
AccB1I GGYRCC 1 cut(s) 124
AccB7I CCANNNNNTGG 1 cut(s) 1085
AccIII TCCGGA 1 cut(s) 1031
AciI CCGC 8 cut(s) 14, 219, 251, 416, 485, 606, 1341, 1365
AclWI GGATC 1 cut(s) 1432
AcoI YGGCCR 3 cut(s) 202, 972, 1338
AcsI RAATTY 3 cut(s) 423, 1048, 1396
AcvI CACGTG 1 cut(s) 1134
AfaI GTAC 3 cut(s) 210, 714, 880
AfiI CCNNNNNNNGG 8 cut(s) 218, 477, 478, 658, 659, 774, 1038, 1085
AgsI TTSAA 9 cut(s) 58, 279, 287, 356, 428, 554, 575, 872, 1276
AjnI CCWGG 1 cut(s) 1084
AluBI AGCT 8 cut(s) 172, 196, 236, 347, 808, 899, 1207, 1331
AluI AGCT 8 cut(s) 172, 196, 236, 347, 808, 899, 1207, 1331
Alw21I GWGCWC 1 cut(s) 1238
Alw26I GTCTC 1 cut(s) 342
AlwI GGATC 1 cut(s) 1432
Ama87I CYCGRG 1 cut(s) 652
Aor13HI TCCGGA 1 cut(s) 1031
AoxI GGCC 7 cut(s) 184, 202, 458, 777, 972, 1075, 1338
ApeKI GCWGC 6 cut(s) 264, 507, 686, 798, 893, 896
ApoI RAATTY 3 cut(s) 423, 1048, 1396
AseI ATTAAT 1 cut(s) 1442
AspLEI GCGC 1 cut(s) 566
AspS9I GGNCC 5 cut(s) 185, 458, 532, 777, 1076
AsuC2I CCSGG 1 cut(s) 501
AsuHPI GGTGA 3 cut(s) 57, 172, 918
AvaI CYCGRG 1 cut(s) 652
AvaII GGWCC 1 cut(s) 532
BaeGI GKGCMC 1 cut(s) 297
BanI GGYRCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 523
BbrPI CACGTG 1 cut(s) 1134
BbsI GAAGAC 1 cut(s) 542
Bbv12I GWGCWC 1 cut(s) 1238
BbvI GCAGC 6 cut(s) 251, 494, 673, 810, 880, 908
BccI CCATC 5 cut(s) 221, 578, 676, 695, 782
BceAI ACGGC 2 cut(s) 445, 959
BciT130I CCWGG 1 cut(s) 1086
BcnI CCSGG 1 cut(s) 501
BcoDI GTCTC 1 cut(s) 342
BfaI CTAG 1 cut(s) 756
BfmI CTRYAG 3 cut(s) 894, 1152, 1353
BfoI RGCGCY 1 cut(s) 567
BfuAI ACCTGC 1 cut(s) 866
Bme1390I CCNGG 2 cut(s) 501, 1086
Bme18I GGWCC 1 cut(s) 532
BmeT110I CYCGRG 1 cut(s) 652
BmgT120I GGNCC 5 cut(s) 185, 458, 532, 777, 1076
BmiI GGNNCC 4 cut(s) 126, 223, 778, 1282
BmrFI CCNGG 2 cut(s) 501, 1086
BmrI ACTGGG 1 cut(s) 823
BmsI GCATC 1 cut(s) 924
BmuI ACTGGG 1 cut(s) 823
BpiI GAAGAC 1 cut(s) 542
BplI GAGNNNNNCTC 2 cut(s) 1225, 1257
Bpu10I CCTNAGC 1 cut(s) 268
BpuMI CCSGG 1 cut(s) 501
Bsa29I ATCGAT 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 1134
BsaJI CCNNGG 3 cut(s) 1011, 1085, 1384
BsaWI WCCGGW 1 cut(s) 1031
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 8 cut(s) 218, 477, 478, 658, 659, 774, 1038, 1085
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 3 cut(s) 527, 829, 1326
Bse3DI GCAATG 1 cut(s) 1144
BseAI TCCGGA 1 cut(s) 1031
BseBI CCWGG 1 cut(s) 1086
BseCI ATCGAT 1 cut(s) 135
BseDI CCNNGG 3 cut(s) 1011, 1085, 1384
BseGI GGATG 5 cut(s) 424, 589, 793, 1320, 1454
BseLI CCNNNNNNNGG 8 cut(s) 218, 477, 478, 658, 659, 774, 1038, 1085
BseMI GCAATG 1 cut(s) 1144
BseMII CTCAG 3 cut(s) 246, 282, 414
BseNI ACTGG 3 cut(s) 527, 829, 1326
BseSI GKGCMC 1 cut(s) 297
BseX3I CGGCCG 1 cut(s) 972
BseXI GCAGC 6 cut(s) 251, 494, 673, 810, 880, 908
BseYI CCCAGC 2 cut(s) 192, 1331
Bsh1285I CGRYCG 1 cut(s) 975
BshFI GGCC 7 cut(s) 186, 204, 460, 779, 974, 1077, 1340
BshNI GGYRCC 1 cut(s) 124
BshVI ATCGAT 1 cut(s) 135
BsiEI CGRYCG 1 cut(s) 975
BsiHKAI GWGCWC 1 cut(s) 1238
BsiHKCI CYCGRG 1 cut(s) 652
BsiSI CCGG 5 cut(s) 122, 183, 201, 501, 1032
BslI CCNNNNNNNGG 8 cut(s) 218, 477, 478, 658, 659, 774, 1038, 1085
BsmAI GTCTC 1 cut(s) 342
BsmI GAATGC 1 cut(s) 851
BsnI GGCC 7 cut(s) 186, 204, 460, 779, 974, 1077, 1340
BsoBI CYCGRG 1 cut(s) 652
Bsp1286I GDGCHC 3 cut(s) 297, 523, 1238
Bsp13I TCCGGA 1 cut(s) 1031
Bsp143I GATC 5 cut(s) 432, 748, 862, 1359, 1424
BspACI CCGC 8 cut(s) 14, 219, 251, 416, 485, 606, 1341, 1365
BspANI GGCC 7 cut(s) 186, 204, 460, 779, 974, 1077, 1340
BspCNI CTCAG 3 cut(s) 245, 281, 413
BspDI ATCGAT 1 cut(s) 135
BspEI TCCGGA 1 cut(s) 1031
BspHI TCATGA 1 cut(s) 1003
BspLI GGNNCC 4 cut(s) 126, 223, 778, 1282
BspMAI CTGCAG 1 cut(s) 898
BspMI ACCTGC 1 cut(s) 866
BspPI GGATC 1 cut(s) 1432
BspT107I GGYRCC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 1144
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 3 cut(s) 527, 829, 1326
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 3 cut(s) 1011, 1085, 1384
BssMI GATC 5 cut(s) 432, 748, 862, 1359, 1424
BssT1I CCWWGG 1 cut(s) 1011
Bst2UI CCWGG 1 cut(s) 1086
Bst4CI ACNGT 4 cut(s) 712, 717, 773, 1385
Bst6I CTCTTC 3 cut(s) 27, 108, 610
BstBAI YACGTR 1 cut(s) 1134
BstC8I GCNNGC 3 cut(s) 796, 891, 1234
BstDEI CTNAG 3 cut(s) 232, 268, 400
BstDSI CCRYGG 1 cut(s) 1384
BstF5I GGATG 5 cut(s) 424, 589, 793, 1320, 1454
BstH2I RGCGCY 1 cut(s) 567
BstHHI GCGC 1 cut(s) 566
BstKTI GATC 5 cut(s) 435, 751, 865, 1362, 1427
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 5 cut(s) 432, 748, 862, 1359, 1424
BstMCI CGRYCG 1 cut(s) 975
BstMWI GCNNNNNNNGC 6 cut(s) 270, 491, 605, 695, 1238, 1337
BstNI CCWGG 1 cut(s) 1086
BstNSI RCATGY 1 cut(s) 693
BstSCI CCNGG 2 cut(s) 499, 1084
BstSFI CTRYAG 3 cut(s) 894, 1152, 1353
BstSLI GKGCMC 1 cut(s) 297
BstV1I GCAGC 6 cut(s) 251, 494, 673, 810, 880, 908
BstV2I GAAGAC 1 cut(s) 542
BstX2I RGATCY 1 cut(s) 1424
BstXI CCANNNNNNTGG 1 cut(s) 836
BstYI RGATCY 1 cut(s) 1424
BstZI CGGCCG 1 cut(s) 972
Bsu15I ATCGAT 1 cut(s) 135
BsuRI GGCC 7 cut(s) 186, 204, 460, 779, 974, 1077, 1340
BsuTUI ATCGAT 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 1384
BtsCI GGATG 5 cut(s) 424, 589, 793, 1320, 1454
BtsI GCAGTG 2 cut(s) 1032, 1236
BtsIMutI CAGTG 5 cut(s) 113, 534, 1032, 1236, 1319
BveI ACCTGC 1 cut(s) 866
Cac8I GCNNGC 3 cut(s) 796, 891, 1234
CciI TCATGA 1 cut(s) 1003
CfoI GCGC 1 cut(s) 566
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 5 cut(s) 185, 458, 532, 777, 1076
ClaI ATCGAT 1 cut(s) 135
Csp6I GTAC 3 cut(s) 209, 713, 879
CviAII CATG 8 cut(s) 206, 690, 836, 912, 1004, 1037, 1180, 1187
CviQI GTAC 3 cut(s) 209, 713, 879
DdeI CTNAG 3 cut(s) 232, 268, 400
DpnI GATC 5 cut(s) 434, 750, 864, 1361, 1426
DpnII GATC 5 cut(s) 432, 748, 862, 1359, 1424
EaeI YGGCCR 3 cut(s) 202, 972, 1338
EagI CGGCCG 1 cut(s) 972
Eam1104I CTCTTC 3 cut(s) 27, 108, 610
EarI CTCTTC 3 cut(s) 27, 108, 610
EclXI CGGCCG 1 cut(s) 972
Eco130I CCWWGG 1 cut(s) 1011
Eco24I GRGCYC 1 cut(s) 523
Eco32I GATATC 1 cut(s) 924
Eco47I GGWCC 1 cut(s) 532
Eco52I CGGCCG 1 cut(s) 972
Eco72I CACGTG 1 cut(s) 1134
Eco88I CYCGRG 1 cut(s) 652
EcoO109I RGGNCCY 1 cut(s) 777
EcoRII CCWGG 1 cut(s) 1084
EcoRV GATATC 1 cut(s) 924
EcoT14I CCWWGG 1 cut(s) 1011
EcoT22I ATGCAT 1 cut(s) 917
EcoT38I GRGCYC 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 1011
FaeI CATG 8 cut(s) 209, 693, 839, 915, 1007, 1040, 1183, 1190
FatI CATG 8 cut(s) 205, 689, 835, 911, 1003, 1036, 1179, 1186
FauNDI CATATG 1 cut(s) 601
FokI GGATG 5 cut(s) 431, 596, 800, 1327, 1441
FriOI GRGCYC 1 cut(s) 523
FspBI CTAG 1 cut(s) 756
GlaI GCGC 1 cut(s) 565
GsaI CCCAGC 2 cut(s) 196, 1335
HaeII RGCGCY 1 cut(s) 567
HaeIII GGCC 7 cut(s) 186, 204, 460, 779, 974, 1077, 1340
HapII CCGG 5 cut(s) 122, 183, 201, 501, 1032
HhaI GCGC 1 cut(s) 566
Hin1II CATG 8 cut(s) 209, 693, 839, 915, 1007, 1040, 1183, 1190
Hin6I GCGC 1 cut(s) 564
HinP1I GCGC 1 cut(s) 564
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 2 cut(s) 806, 1205
HinfI GANTC 7 cut(s) 118, 244, 283, 474, 1160, 1183, 1219
HpaI GTTAAC 1 cut(s) 382
HpaII CCGG 5 cut(s) 122, 183, 201, 501, 1032
HphI GGTGA 3 cut(s) 57, 172, 918
Hpy166II GTNNAC 2 cut(s) 382, 532
Hpy188I TCNGA 3 cut(s) 437, 1128, 1429
Hpy188III TCNNGA 5 cut(s) 919, 991, 1004, 1032, 1273
Hpy8I GTNNAC 2 cut(s) 382, 532
HpyAV CCTTC 3 cut(s) 55, 198, 1340
HpyCH4III ACNGT 4 cut(s) 712, 717, 773, 1385
HpyCH4IV ACGT 2 cut(s) 291, 1133
HpyF10VI GCNNNNNNNGC 6 cut(s) 270, 491, 605, 695, 1238, 1337
HpyF3I CTNAG 3 cut(s) 232, 268, 400
HpySE526I ACGT 2 cut(s) 291, 1133
Hsp92II CATG 8 cut(s) 209, 693, 839, 915, 1007, 1040, 1183, 1190
HspAI GCGC 1 cut(s) 564
Kpn2I TCCGGA 1 cut(s) 1031
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 5 cut(s) 432, 748, 862, 1359, 1424
LmnI GCTCC 4 cut(s) 227, 344, 791, 1211
Lsp1109I GCAGC 6 cut(s) 251, 494, 673, 810, 880, 908
LweI GCATC 1 cut(s) 924
MaeI CTAG 1 cut(s) 756
MaeII ACGT 2 cut(s) 291, 1133
MaeIII GTNAC 1 cut(s) 1317
MalI GATC 5 cut(s) 434, 750, 864, 1361, 1426
MboI GATC 5 cut(s) 432, 748, 862, 1359, 1424
MboII GAAGA 5 cut(s) 14, 16, 95, 542, 627
MflI RGATCY 1 cut(s) 1424
MhlI GDGCHC 3 cut(s) 297, 523, 1238
MluCI AATT 4 cut(s) 423, 575, 1048, 1396
MlyI GAGTC 1 cut(s) 1192
MmeI TCCRAC 3 cut(s) 607, 664, 1129
Mph1103I ATGCAT 1 cut(s) 917
MroI TCCGGA 1 cut(s) 1031
MseI TTAA 4 cut(s) 381, 1068, 1145, 1442
MslI CAYNNNNRTG 2 cut(s) 840, 1041
MspA1I CMGCKG 2 cut(s) 219, 1365
MspI CCGG 5 cut(s) 122, 183, 201, 501, 1032
MspR9I CCNGG 2 cut(s) 501, 1086
Mva1269I GAATGC 1 cut(s) 851
MvaI CCWGG 1 cut(s) 1086
MwoI GCNNNNNNNGC 6 cut(s) 270, 491, 605, 695, 1238, 1337
NciI CCSGG 1 cut(s) 501
NdeI CATATG 1 cut(s) 601
NdeII GATC 5 cut(s) 432, 748, 862, 1359, 1424
NlaIII CATG 8 cut(s) 209, 693, 839, 915, 1007, 1040, 1183, 1190
NlaIV GGNNCC 4 cut(s) 126, 223, 778, 1282
NmuCI GTSAC 1 cut(s) 1317
NsiI ATGCAT 1 cut(s) 917
NspI RCATGY 1 cut(s) 693
PagI TCATGA 1 cut(s) 1003
PctI GAATGC 1 cut(s) 851
PfeI GAWTC 6 cut(s) 118, 244, 283, 474, 1160, 1219
PflMI CCANNNNNTGG 1 cut(s) 1085
PleI GAGTC 1 cut(s) 1191
PmaCI CACGTG 1 cut(s) 1134
PmlI CACGTG 1 cut(s) 1134
PpsI GAGTC 1 cut(s) 1191
Ppu21I YACGTR 1 cut(s) 1134
PshBI ATTAAT 1 cut(s) 1442
Psp6I CCWGG 1 cut(s) 1084
PspCI CACGTG 1 cut(s) 1134
PspFI CCCAGC 2 cut(s) 192, 1331
PspGI CCWGG 1 cut(s) 1084
PspN4I GGNNCC 4 cut(s) 126, 223, 778, 1282
PspPI GGNCC 5 cut(s) 185, 458, 532, 777, 1076
PstI CTGCAG 1 cut(s) 898
PsuI RGATCY 1 cut(s) 1424
RsaI GTAC 3 cut(s) 210, 714, 880
RsaNI GTAC 3 cut(s) 209, 713, 879
RseI CAYNNNNRTG 2 cut(s) 840, 1041
SaqAI TTAA 4 cut(s) 381, 1068, 1145, 1442
Sau3AI GATC 5 cut(s) 432, 748, 862, 1359, 1424
Sau96I GGNCC 5 cut(s) 185, 458, 532, 777, 1076
SchI GAGTC 1 cut(s) 1192
ScrFI CCNGG 2 cut(s) 501, 1086
SduI GDGCHC 3 cut(s) 297, 523, 1238
SfaNI GCATC 1 cut(s) 924
SfcI CTRYAG 3 cut(s) 894, 1152, 1353
SinI GGWCC 1 cut(s) 532
SmiMI CAYNNNNRTG 2 cut(s) 840, 1041
Sse9I AATT 4 cut(s) 423, 575, 1048, 1396
SsiI CCGC 8 cut(s) 14, 219, 251, 416, 485, 606, 1341, 1365
SspI AATATT 1 cut(s) 514
SspMI CTAG 1 cut(s) 756
StyD4I CCNGG 2 cut(s) 499, 1084
StyI CCWWGG 1 cut(s) 1011
TaaI ACNGT 4 cut(s) 712, 717, 773, 1385
TaiI ACGT 2 cut(s) 294, 1136
TaqI TCGA 4 cut(s) 135, 306, 523, 920
TasI AATT 4 cut(s) 423, 575, 1048, 1396
TatI WGTACW 1 cut(s) 712
TauI GCSGC 5 cut(s) 17, 222, 254, 608, 1343
TfiI GAWTC 6 cut(s) 118, 244, 283, 474, 1160, 1219
Tru1I TTAA 4 cut(s) 381, 1068, 1145, 1442
Tru9I TTAA 4 cut(s) 381, 1068, 1145, 1442
TscAI CASTG 5 cut(s) 120, 534, 1032, 1243, 1326
TseFI GTSAC 1 cut(s) 1317
TseI GCWGC 6 cut(s) 264, 507, 686, 798, 893, 896
Tsp45I GTSAC 1 cut(s) 1317
TspDTI ATGAA 3 cut(s) 17, 435, 1421
TspGWI ACGGA 1 cut(s) 683
TspRI CASTG 5 cut(s) 120, 534, 1032, 1243, 1326
Van91I CCANNNNNTGG 1 cut(s) 1085
VpaK11BI GGWCC 1 cut(s) 532
VspI ATTAAT 1 cut(s) 1442
XapI RAATTY 3 cut(s) 423, 1048, 1396
XceI RCATGY 1 cut(s) 693
XspI CTAG 1 cut(s) 756
Zsp2I ATGCAT 1 cut(s) 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.