Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001544

Physical Location & Seq

Genomic Coordinates Reverse (-)

45075509 .. 45077199

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025330

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCAGCTTTGGCAAATTCGTATGGATGGCAAAGTTCAGGCATATGCATTAAATGGAAGAGGACTAGAAGTTTCCAACTTGATTACCCTAGCATTGGGGCAACAAAAACCCTTCTAATGGCTGCATGTATGGCTGATGGAACAACTATACTGTCCAATGTTGCCAGAGAACCAGAGGTGGTTGATCTTCTTGTCATCAAGGGAATATCTCATTTGCATGGTTGTAAATGTACTATTGCACCTGATCGTATTGAAGCAGGCACATTTATGCTTGCTGCAGCTATTACTCGCTCATTCATTTCAATTTCACCTGTCATTCCTTCCCAAGTTTCCTGTCTGATGCAAAAACTCTCGGCCGCGGGTTGCAAAATAAGTGGTTTGTCTGGTTCCTGCCTTGCTGCAACTGACCTCAGAGGTGGGATATCATTGGTATTAGCTGCATGGTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

151

Amino Acids

15.86

Weight (kDa)

8.92

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPSP_synthase	PF00275	19 - 64	6.5e-07	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
EPSP_synthase	PF00275	65 - 125	4.6e-09	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001544)

Species	Orthologous Gene IDs
malus_domestica	MD03G1241800.v1.1
prunus_persica	Prupe.4G167100_v2.0.a1 Prupe.4G167100_v2.0.a1
pyrus_communis	pycom03g18890
rosa_chinensis	RchiOBHm_Chr5g0030831 RchiOBHm_Chr5g0031211 RchiOBHm_Chr5g0031411 RchiOBHm_Chr7g0194341
rosa_laevigata	RLG00000002889 RLG00000009452 RLG00000010063 RLG00000020938 RLG00000025330 RLG00000029419 RLG00000033292
rosa_multiflora	Rmu_sc0002426.1_g000013 Rmu_sc0002505.1_g000024 Rmu_sc0004790.1_g000012 Rmu_sc0005543.1_g000001 Rmu_sc0014478.1_g000005 Rmu_sc0014478.1_g000006
rosa_roxburghii	Rroxscaffold_1G00039380 Rroxscaffold_1G00049410 Rroxscaffold_4G00315890
rosa_rugosa	Rorug05G0122800 Rorug05G0125100
rosa_samantha	Rh1BG113100 Rh1CG264100 Rh2BG469500 Rh2DG478900 Rh5AG213800 Rh5AG217800 Rh5BG213000 Rh5BG213100 Rh5BG217500 Rh5CG236700 Rh5CG239700 Rh5CG241300 Rh5DG217500 Rh5DG221000 Rh5DG222900 Rh5DG281900 Rh5DG502600 Rh6BG212100 Rh7AG059300 Rh7CG251400
rosa_wichuraiana	Rw0G012990 Rw0G015960 Rw5G019540 Rw5G019900 Rw5G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	359
AciI	CCGC	2 cut(s)	357, 359
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	16
AfaI	GTAC	2 cut(s)	232, 446
AfiI	CCNNNNNNNGG	2 cut(s)	95, 118
AgsI	TTSAA	2 cut(s)	254, 303
AluBI	AGCT	3 cut(s)	8, 281, 437
AluI	AGCT	3 cut(s)	8, 281, 437
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	6 cut(s)	5, 122, 275, 278, 398, 437
ApoI	RAATTY	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	300
BbvI	GCAGC	6 cut(s)	17, 109, 262, 290, 385, 424
BccI	CCATC	2 cut(s)	21, 131
BfaI	CTAG	2 cut(s)	66, 90
BfmI	CTRYAG	1 cut(s)	276
BisI	GCNGC	7 cut(s)	6, 123, 276, 279, 357, 399, 438
BlsI	GCNGC	7 cut(s)	7, 124, 277, 280, 358, 400, 439
BmiI	GGNNCC	1 cut(s)	388
BmsI	GCATC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 118
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	32
BseLI	CCNNNNNNNGG	2 cut(s)	95, 118
BseMII	CTCAG	1 cut(s)	424
BseX3I	CGGCCG	1 cut(s)	354
BseXI	GCAGC	6 cut(s)	17, 109, 262, 290, 385, 424
Bsh1236I	CGCG	1 cut(s)	359
Bsh1285I	CGRYCG	1 cut(s)	357
BshFI	GGCC	1 cut(s)	356
BsiEI	CGRYCG	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	95, 118
BsnI	GGCC	1 cut(s)	356
Bsp143I	GATC	2 cut(s)	184, 244
BspACI	CCGC	2 cut(s)	357, 359
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	423
BspFNI	CGCG	1 cut(s)	359
BspLI	GGNNCC	1 cut(s)	388
BspMAI	CTGCAG	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	2 cut(s)	184, 244
Bst4CI	ACNGT	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	259, 273
BstDEI	CTNAG	1 cut(s)	410
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	359
BstKTI	GATC	2 cut(s)	187, 247
BstMBI	GATC	2 cut(s)	184, 244
BstMCI	CGRYCG	1 cut(s)	357
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 131
BstNSI	RCATGY	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	276
BstUI	CGCG	1 cut(s)	359
BstV1I	GCAGC	6 cut(s)	17, 109, 262, 290, 385, 424
BstZI	CGGCCG	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	32
Cac8I	GCNNGC	2 cut(s)	259, 273
Cfr42I	CCGCGG	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	231, 445
CspCI	CAANNNNNGTGG	2 cut(s)	355, 390
CviAII	CATG	3 cut(s)	126, 218, 441
CviJI	RGCY	6 cut(s)	8, 122, 134, 281, 356, 437
CviKI_1	RGCY	6 cut(s)	8, 122, 134, 281, 356, 437
CviQI	GTAC	2 cut(s)	231, 445
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	2 cut(s)	186, 246
DpnII	GATC	2 cut(s)	184, 244
EaeI	YGGCCR	1 cut(s)	354
EagI	CGGCCG	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EclXI	CGGCCG	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	423
Eco52I	CGGCCG	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	423
EcoT22I	ATGCAT	1 cut(s)	50
FaeI	CATG	3 cut(s)	129, 221, 444
FaiI	YATR	9 cut(s)	24, 44, 46, 127, 131, 149, 219, 269, 442
FatI	CATG	3 cut(s)	125, 217, 440
FauI	CCCGC	1 cut(s)	352
FauNDI	CATATG	1 cut(s)	44
Fnu4HI	GCNGC	7 cut(s)	6, 123, 276, 279, 357, 399, 438
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	7 cut(s)	6, 123, 276, 279, 357, 399, 438
FspBI	CTAG	2 cut(s)	66, 90
GluI	GCNGC	7 cut(s)	6, 123, 276, 279, 357, 399, 438
HaeIII	GGCC	1 cut(s)	356
Hin1II	CATG	3 cut(s)	129, 221, 444
HphI	GGTGA	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	339, 413
HpyAV	CCTTC	2 cut(s)	122, 330
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4V	TGCA	9 cut(s)	48, 125, 217, 239, 278, 343, 366, 401, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 131
HpyF3I	CTNAG	1 cut(s)	410
Hsp92II	CATG	3 cut(s)	129, 221, 444
KspI	CCGCGG	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	184, 244
LpnPI	CCDG	9 cut(s)	24, 178, 186, 243, 255, 324, 346, 369, 403
Lsp1109I	GCAGC	6 cut(s)	17, 109, 262, 290, 385, 424
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	2 cut(s)	66, 90
MalI	GATC	2 cut(s)	186, 246
MboI	GATC	2 cut(s)	184, 244
MboII	GAAGA	2 cut(s)	70, 179
MluCI	AATT	2 cut(s)	16, 303
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	4 cut(s)	54, 169, 407, 419
Mph1103I	ATGCAT	1 cut(s)	50
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	2 cut(s)	216, 266
MspA1I	CMGCKG	1 cut(s)	359
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	11, 131
NdeI	CATATG	1 cut(s)	44
NdeII	GATC	2 cut(s)	184, 244
NlaIII	CATG	3 cut(s)	129, 221, 444
NlaIV	GGNNCC	1 cut(s)	388
NmeAIII	GCCGAG	1 cut(s)	332
NsiI	ATGCAT	1 cut(s)	50
NspI	RCATGY	1 cut(s)	129
PkrI	GCNGC	7 cut(s)	7, 124, 277, 280, 358, 400, 439
PspN4I	GGNNCC	1 cut(s)	388
PstI	CTGCAG	1 cut(s)	280
RsaI	GTAC	2 cut(s)	232, 446
RsaNI	GTAC	2 cut(s)	231, 445
RseI	CAYNNNNRTG	2 cut(s)	216, 266
SacII	CCGCGG	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	7 cut(s)	6, 123, 276, 279, 357, 399, 438
Sau3AI	GATC	2 cut(s)	184, 244
SetI	ASST	8 cut(s)	10, 180, 244, 283, 313, 411, 418, 439
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	1 cut(s)	276
Sfr303I	CCGCGG	1 cut(s)	360
SgrBI	CCGCGG	1 cut(s)	360
SmiMI	CAYNNNNRTG	2 cut(s)	216, 266
Sse9I	AATT	2 cut(s)	16, 303
SsiI	CCGC	2 cut(s)	357, 359
SspMI	CTAG	2 cut(s)	66, 90
TaaI	ACNGT	1 cut(s)	153
TasI	AATT	2 cut(s)	16, 303
TatI	WGTACW	1 cut(s)	230
TauI	GCSGC	1 cut(s)	359
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseI	GCWGC	6 cut(s)	5, 122, 275, 278, 398, 437
TspDTI	ATGAA	1 cut(s)	286
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	1 cut(s)	129
XspI	CTAG	2 cut(s)	66, 90
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.