Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001544

Physical Location & Seq

Genomic Coordinates Reverse (-)

69584897 .. 69589544

Gene Structure 4648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00049410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGTTAACACTGTGGGATTACATCTGTTGAGCCTAATTCAGAAGATCCGAGGTGGGTTTTTCGTTCTTGGGCCGCCGGTAGCCCGGTTCGGTGAGGCTGTGGTTGCATTACCCGGTGGCTGTGACATTGGGGCTAGACCGGTGGACCTTTACATTCGGGGTCTTCAAGCGCTTGGTGCTGTTGTGGAGATGAAGGATGGCAAAGTTCAGGCATATGCATTAAATGGAAGAGGATTGGTTTGGGGAAGTTTCCAACTTGATTACCCTAGCGTTGGGGCAACAGAGACCCTTCTGATGGCTGCATGTATGGATGATGGAACAACTATACTGTCCAGTGTTGCCAGAGAGCAGGAAGCAACAAAGCTTGTCATCAAGGGAAAATCTCATTTTCATGGTTGTAAATGTACTATTGCACCTGATCGCATTGAAGCAGGCACGTTTTTGCTTGCTGCAGCTATTGCTCGCTCATTCATTTTAATTTCACCTGTCATTCCTTCCCAAGTTTCCTGTCTGATGCAAAAACTCTTGGCCGCTGGTTGCAAAATAAGGCAATGTTCTCATGATACCTTGGAAGTTTTGAGGTTAAGACGGCCATTTCCCGGGTTTCCTACAGATCTCCAACAGCAAACAATGGCCCTGCTAACCACGTGCAATGGTTTTAGTCCTGTAGAAGAGTCTGTATTTGCAAAGCACATGGCAAATGTAAACGAACTGCCGAAGCTTGGAGCAAAAATTCAAGTCTGTGCAAGCTCTGCTCTGGTTTTCGGGAAAGATAATAGAAGTGGTTTGTCTGGTTCCTCCCTTGCTGCAACTGACCTCAGAGTTGGGATATCATTGGTATTAGGTGCATTGGCTGCAGAAGGTACTACTGAGATCAGCAGTGTTGCTCATATTGACTGTGGTTATGAGAATGTAGATACACAACTTCATATGCTGGGAGCCGATATCAAAAGATTAACGGCCCCTGCTTCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

325

Amino Acids

34.29

Weight (kDa)

8.03

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPSP_synthase	PF00275	17 - 117	2e-16	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
EPSP_synthase	PF00275	115 - 305	2.5e-27	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001544)

Species	Orthologous Gene IDs
malus_domestica	MD03G1241800.v1.1
prunus_persica	Prupe.4G167100_v2.0.a1 Prupe.4G167100_v2.0.a1
pyrus_communis	pycom03g18890
rosa_chinensis	RchiOBHm_Chr5g0030831 RchiOBHm_Chr5g0031211 RchiOBHm_Chr5g0031411 RchiOBHm_Chr7g0194341
rosa_laevigata	RLG00000002889 RLG00000009452 RLG00000010063 RLG00000020938 RLG00000025330 RLG00000029419 RLG00000033292
rosa_multiflora	Rmu_sc0002426.1_g000013 Rmu_sc0002505.1_g000024 Rmu_sc0004790.1_g000012 Rmu_sc0005543.1_g000001 Rmu_sc0014478.1_g000005 Rmu_sc0014478.1_g000006
rosa_roxburghii	Rroxscaffold_1G00039380 Rroxscaffold_1G00049410 Rroxscaffold_4G00315890
rosa_rugosa	Rorug05G0122800 Rorug05G0125100
rosa_samantha	Rh1BG113100 Rh1CG264100 Rh2BG469500 Rh2DG478900 Rh5AG213800 Rh5AG217800 Rh5BG213000 Rh5BG213100 Rh5BG217500 Rh5CG236700 Rh5CG239700 Rh5CG241300 Rh5DG217500 Rh5DG221000 Rh5DG222900 Rh5DG281900 Rh5DG502600 Rh6BG212100 Rh7AG059300 Rh7CG251400
rosa_wichuraiana	Rw0G012990 Rw0G015960 Rw5G019540 Rw5G019900 Rw5G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	74, 531
AclWI	GGATC	1 cut(s)	40
AcoI	YGGCCR	2 cut(s)	528, 590
AcsI	RAATTY	1 cut(s)	732
AcvI	CACGTG	1 cut(s)	648
AfaI	GTAC	2 cut(s)	406, 865
AfeI	AGCGCT	1 cut(s)	171
AfiI	CCNNNNNNNGG	4 cut(s)	272, 295, 599, 722
AgeI	ACCGGT	1 cut(s)	139
AgsI	TTSAA	3 cut(s)	167, 428, 737
AluBI	AGCT	4 cut(s)	364, 455, 721, 750
AluI	AGCT	4 cut(s)	364, 455, 721, 750
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	40
Ama87I	CYCGRG	1 cut(s)	599
Aor51HI	AGCGCT	1 cut(s)	171
AoxI	GGCC	5 cut(s)	71, 528, 590, 633, 960
ApeKI	GCWGC	5 cut(s)	299, 449, 452, 806, 854
ApoI	RAATTY	1 cut(s)	732
AsiGI	ACCGGT	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	4 cut(s)	71, 145, 634, 961
AsuC2I	CCSGG	4 cut(s)	85, 114, 600, 601
AsuHPI	GGTGA	2 cut(s)	104, 474
AvaI	CYCGRG	1 cut(s)	599
AvaII	GGWCC	1 cut(s)	145
BbrPI	CACGTG	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	155
BbvI	GCAGC	5 cut(s)	286, 436, 464, 793, 841
BccI	CCATC	3 cut(s)	191, 289, 308
BceAI	ACGGC	2 cut(s)	605, 975
BcnI	CCSGG	4 cut(s)	85, 114, 600, 601
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	3 cut(s)	135, 267, 976
BfmI	CTRYAG	4 cut(s)	450, 609, 666, 855
BfoI	RGCGCY	1 cut(s)	173
BglII	AGATCT	1 cut(s)	613
BisI	GCNGC	7 cut(s)	74, 300, 450, 453, 531, 807, 855
BlsI	GCNGC	7 cut(s)	75, 301, 451, 454, 532, 808, 856
Bme1390I	CCNGG	4 cut(s)	85, 114, 600, 601
Bme18I	GGWCC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	599
BmgT120I	GGNCC	4 cut(s)	71, 145, 634, 961
BmiI	GGNNCC	3 cut(s)	796, 940, 963
BmrFI	CCNGG	4 cut(s)	85, 114, 600, 601
BmsI	GCATC	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	155
BpuMI	CCSGG	4 cut(s)	85, 114, 600, 601
BsaAI	YACGTR	1 cut(s)	648
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	3 cut(s)	49, 567, 599
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	4 cut(s)	272, 295, 599, 722
Bse118I	RCCGGY	2 cut(s)	76, 139
Bse1I	ACTGG	1 cut(s)	333
Bse3DI	GCAATG	2 cut(s)	557, 658
BseDI	CCNNGG	3 cut(s)	49, 567, 599
BseGI	GGATG	2 cut(s)	202, 316
BseLI	CCNNNNNNNGG	4 cut(s)	272, 295, 599, 722
BseMI	GCAATG	2 cut(s)	557, 658
BseMII	CTCAG	2 cut(s)	832, 861
BseNI	ACTGG	1 cut(s)	333
BseXI	GCAGC	5 cut(s)	286, 436, 464, 793, 841
BseYI	CCCAGC	1 cut(s)	934
BshFI	GGCC	5 cut(s)	73, 530, 592, 635, 962
BshTI	ACCGGT	1 cut(s)	139
BsiHKCI	CYCGRG	1 cut(s)	599
BsiSI	CCGG	5 cut(s)	77, 85, 114, 140, 600
BslI	CCNNNNNNNGG	4 cut(s)	272, 295, 599, 722
BsmAI	GTCTC	1 cut(s)	278
BsnI	GGCC	5 cut(s)	73, 530, 592, 635, 962
Bso31I	GGTCTC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	599
Bsp143I	GATC	4 cut(s)	45, 418, 613, 873
BspACI	CCGC	2 cut(s)	74, 531
BspANI	GGCC	5 cut(s)	73, 530, 592, 635, 962
BspCNI	CTCAG	2 cut(s)	831, 862
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	3 cut(s)	796, 940, 963
BspMAI	CTGCAG	2 cut(s)	454, 859
BspPI	GGATC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	278
BsrDI	GCAATG	2 cut(s)	557, 658
BsrFI	RCCGGY	2 cut(s)	76, 139
BsrI	ACTGG	1 cut(s)	333
BssAI	RCCGGY	2 cut(s)	76, 139
BssECI	CCNNGG	3 cut(s)	49, 567, 599
BssMI	GATC	4 cut(s)	45, 418, 613, 873
BssT1I	CCWWGG	1 cut(s)	567
Bst4CI	ACNGT	3 cut(s)	13, 330, 899
Bst6I	CTCTTC	2 cut(s)	223, 666
BstAPI	GCANNNNNTGC	3 cut(s)	458, 752, 854
BstBAI	YACGTR	1 cut(s)	648
BstC8I	GCNNGC	4 cut(s)	433, 447, 463, 748
BstDEI	CTNAG	2 cut(s)	818, 870
BstF5I	GGATG	2 cut(s)	202, 316
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	4 cut(s)	48, 421, 616, 876
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	4 cut(s)	45, 418, 613, 873
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 176, 458, 752, 854
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	4 cut(s)	83, 112, 598, 599
BstSFI	CTRYAG	4 cut(s)	450, 609, 666, 855
BstV1I	GCAGC	5 cut(s)	286, 436, 464, 793, 841
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	2 cut(s)	45, 613
BstYI	RGATCY	2 cut(s)	45, 613
BsuRI	GGCC	5 cut(s)	73, 530, 592, 635, 962
BtsCI	GGATG	2 cut(s)	202, 316
BtsI	GCAGTG	1 cut(s)	886
BtsIMutI	CAGTG	3 cut(s)	9, 340, 886
Cac8I	GCNNGC	4 cut(s)	433, 447, 463, 748
CciI	TCATGA	1 cut(s)	559
CfoI	GCGC	1 cut(s)	172
Cfr10I	RCCGGY	2 cut(s)	76, 139
Cfr13I	GGNCC	4 cut(s)	71, 145, 634, 961
Cfr9I	CCCGGG	1 cut(s)	599
Csp6I	GTAC	2 cut(s)	405, 864
CspAI	ACCGGT	1 cut(s)	139
CviAII	CATG	4 cut(s)	303, 392, 560, 694
CviQI	GTAC	2 cut(s)	405, 864
DdeI	CTNAG	2 cut(s)	818, 870
DpnI	GATC	4 cut(s)	47, 420, 615, 875
DpnII	GATC	4 cut(s)	45, 418, 613, 873
EaeI	YGGCCR	2 cut(s)	528, 590
Eam1104I	CTCTTC	2 cut(s)	223, 666
EarI	CTCTTC	2 cut(s)	223, 666
Eco130I	CCWWGG	1 cut(s)	567
Eco31I	GGTCTC	1 cut(s)	278
Eco32I	GATATC	2 cut(s)	831, 946
Eco47I	GGWCC	1 cut(s)	145
Eco47III	AGCGCT	1 cut(s)	171
Eco72I	CACGTG	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	599
EcoRV	GATATC	2 cut(s)	831, 946
EcoT14I	CCWWGG	1 cut(s)	567
EcoT22I	ATGCAT	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	4 cut(s)	306, 395, 563, 697
FatI	CATG	4 cut(s)	302, 391, 559, 693
FauNDI	CATATG	2 cut(s)	214, 930
Fnu4HI	GCNGC	7 cut(s)	74, 300, 450, 453, 531, 807, 855
FokI	GGATG	2 cut(s)	209, 323
Fsp4HI	GCNGC	7 cut(s)	74, 300, 450, 453, 531, 807, 855
FspBI	CTAG	3 cut(s)	135, 267, 976
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	7 cut(s)	74, 300, 450, 453, 531, 807, 855
GsaI	CCCAGC	1 cut(s)	938
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	5 cut(s)	73, 530, 592, 635, 962
HapII	CCGG	5 cut(s)	77, 85, 114, 140, 600
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	4 cut(s)	306, 395, 563, 697
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	2 cut(s)	362, 719
HinfI	GANTC	1 cut(s)	674
HpaI	GTTAAC	1 cut(s)	7
HpaII	CCGG	5 cut(s)	77, 85, 114, 140, 600
HphI	GGTGA	2 cut(s)	104, 474
Hpy166II	GTNNAC	3 cut(s)	7, 145, 706
Hpy188I	TCNGA	5 cut(s)	42, 50, 294, 513, 821
Hpy188III	TCNNGA	2 cut(s)	560, 766
Hpy8I	GTNNAC	3 cut(s)	7, 145, 706
HpyAV	CCTTC	4 cut(s)	187, 299, 504, 854
HpyCH4III	ACNGT	3 cut(s)	13, 330, 899
HpyCH4IV	ACGT	2 cut(s)	437, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 176, 458, 752, 854
HpyF3I	CTNAG	2 cut(s)	818, 870
HpySE526I	ACGT	2 cut(s)	437, 647
Hsp92II	CATG	4 cut(s)	306, 395, 563, 697
HspAI	GCGC	1 cut(s)	170
KspAI	GTTAAC	1 cut(s)	7
Kzo9I	GATC	4 cut(s)	45, 418, 613, 873
LmnI	GCTCC	2 cut(s)	725, 938
Lsp1109I	GCAGC	5 cut(s)	286, 436, 464, 793, 841
LweI	GCATC	1 cut(s)	504
MaeI	CTAG	3 cut(s)	135, 267, 976
MaeII	ACGT	2 cut(s)	437, 647
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	4 cut(s)	47, 420, 615, 875
MboI	GATC	4 cut(s)	45, 418, 613, 873
MboII	GAAGA	5 cut(s)	55, 155, 240, 683, 963
MflI	RGATCY	2 cut(s)	45, 613
MluCI	AATT	3 cut(s)	36, 477, 732
MlyI	GAGTC	1 cut(s)	683
MmeI	TCCRAC	2 cut(s)	277, 643
MnlI	CCTC	6 cut(s)	44, 88, 224, 573, 808, 827
Mph1103I	ATGCAT	1 cut(s)	220
MseI	TTAA	5 cut(s)	6, 221, 476, 584, 956
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	5 cut(s)	77, 85, 114, 140, 600
MspR9I	CCNGG	4 cut(s)	85, 114, 600, 601
MwoI	GCNNNNNNNGC	5 cut(s)	104, 176, 458, 752, 854
NciI	CCSGG	4 cut(s)	85, 114, 600, 601
NdeI	CATATG	2 cut(s)	214, 930
NdeII	GATC	4 cut(s)	45, 418, 613, 873
NlaIII	CATG	4 cut(s)	306, 395, 563, 697
NlaIV	GGNNCC	3 cut(s)	796, 940, 963
NmuCI	GTSAC	1 cut(s)	122
NsiI	ATGCAT	1 cut(s)	220
NspI	RCATGY	1 cut(s)	306
PagI	TCATGA	1 cut(s)	559
PinAI	ACCGGT	1 cut(s)	139
PkrI	GCNGC	7 cut(s)	75, 301, 451, 454, 532, 808, 856
PleI	GAGTC	1 cut(s)	682
PmaCI	CACGTG	1 cut(s)	648
PmlI	CACGTG	1 cut(s)	648
PpsI	GAGTC	1 cut(s)	682
Ppu21I	YACGTR	1 cut(s)	648
PspCI	CACGTG	1 cut(s)	648
PspFI	CCCAGC	1 cut(s)	934
PspN4I	GGNNCC	3 cut(s)	796, 940, 963
PspPI	GGNCC	4 cut(s)	71, 145, 634, 961
PstI	CTGCAG	2 cut(s)	454, 859
PsuI	RGATCY	2 cut(s)	45, 613
RsaI	GTAC	2 cut(s)	406, 865
RsaNI	GTAC	2 cut(s)	405, 864
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	5 cut(s)	6, 221, 476, 584, 956
SatI	GCNGC	7 cut(s)	74, 300, 450, 453, 531, 807, 855
Sau3AI	GATC	4 cut(s)	45, 418, 613, 873
Sau96I	GGNCC	4 cut(s)	71, 145, 634, 961
SchI	GAGTC	1 cut(s)	683
ScrFI	CCNGG	4 cut(s)	85, 114, 600, 601
SfaNI	GCATC	1 cut(s)	504
SfcI	CTRYAG	4 cut(s)	450, 609, 666, 855
SinI	GGWCC	1 cut(s)	145
SmaI	CCCGGG	1 cut(s)	601
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	3 cut(s)	36, 477, 732
SsiI	CCGC	2 cut(s)	74, 531
SspMI	CTAG	3 cut(s)	135, 267, 976
StyD4I	CCNGG	4 cut(s)	83, 112, 598, 599
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	3 cut(s)	13, 330, 899
TaiI	ACGT	2 cut(s)	440, 650
TasI	AATT	3 cut(s)	36, 477, 732
TatI	WGTACW	1 cut(s)	404
TauI	GCSGC	2 cut(s)	76, 533
Tru1I	TTAA	5 cut(s)	6, 221, 476, 584, 956
Tru9I	TTAA	5 cut(s)	6, 221, 476, 584, 956
TscAI	CASTG	3 cut(s)	16, 340, 886
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	5 cut(s)	299, 449, 452, 806, 854
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	4 cut(s)	206, 380, 460, 917
TspMI	CCCGGG	1 cut(s)	599
TspRI	CASTG	3 cut(s)	16, 340, 886
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	732
XceI	RCATGY	1 cut(s)	306
XmaI	CCCGGG	1 cut(s)	599
XspI	CTAG	3 cut(s)	135, 267, 976
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.