Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014478.1

Orthogroup ID

OG0001544

Physical Location & Seq

Genomic Coordinates Reverse (-)

14767 .. 16777

Gene Structure 2011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014478.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atggtcaacactgtgggattacatctgttgagcctaattcggaagatccgaggtgggtttttcgttcttgggccactggtagcccggttcggtgaggctgtggttgcattacccggtggctgtggcattggggctagaccggtggacctttacattcggggtcttcaagctcttgatgctgttgtggagatgaaggatggaaaagttcaggcatatgcattaaatggaagaggattggttgggggaagtttccaacttgattaccctagcgctggggcaacagaaacccttctgatggctgcatgtatggctgatggaacaactaaactgtccagtgttgccagagtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

116

Amino Acids

11.99

Weight (kDa)

9.14

Isoelectric Point (pI)

23.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001544)

Species	Orthologous Gene IDs
malus_domestica	MD03G1241800.v1.1
prunus_persica	Prupe.4G167100_v2.0.a1 Prupe.4G167100_v2.0.a1
pyrus_communis	pycom03g18890
rosa_chinensis	RchiOBHm_Chr5g0030831 RchiOBHm_Chr5g0031211 RchiOBHm_Chr5g0031411 RchiOBHm_Chr7g0194341
rosa_laevigata	RLG00000002889 RLG00000009452 RLG00000010063 RLG00000020938 RLG00000025330 RLG00000029419 RLG00000033292
rosa_multiflora	Rmu_sc0002426.1_g000013 Rmu_sc0002505.1_g000024 Rmu_sc0004790.1_g000012 Rmu_sc0005543.1_g000001 Rmu_sc0014478.1_g000005 Rmu_sc0014478.1_g000006
rosa_roxburghii	Rroxscaffold_1G00039380 Rroxscaffold_1G00049410 Rroxscaffold_4G00315890
rosa_rugosa	Rorug05G0122800 Rorug05G0125100
rosa_samantha	Rh1BG113100 Rh1CG264100 Rh2BG469500 Rh2DG478900 Rh5AG213800 Rh5AG217800 Rh5BG213000 Rh5BG213100 Rh5BG217500 Rh5CG236700 Rh5CG239700 Rh5CG241300 Rh5DG217500 Rh5DG221000 Rh5DG222900 Rh5DG281900 Rh5DG502600 Rh6BG212100 Rh7AG059300 Rh7CG251400
rosa_wichuraiana	Rw0G012990 Rw0G015960 Rw5G019540 Rw5G019900 Rw5G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	40
AfeI	AGCGCT	1 cut(s)	271
AfiI	CCNNNNNNNGG	2 cut(s)	272, 295
AgeI	ACCGGT	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	167
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
AlwI	GGATC	1 cut(s)	40
Aor51HI	AGCGCT	1 cut(s)	271
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	299
AsiGI	ACCGGT	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	2 cut(s)	71, 145
AsuC2I	CCSGG	2 cut(s)	85, 114
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	3 cut(s)	191, 289, 308
BcnI	CCSGG	2 cut(s)	85, 114
BfaI	CTAG	2 cut(s)	135, 267
BfoI	RGCGCY	1 cut(s)	273
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	2 cut(s)	85, 114
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	71, 145
BmrFI	CCNGG	2 cut(s)	85, 114
BmsI	GCATC	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	155
BpuMI	CCSGG	2 cut(s)	85, 114
BsaJI	CCNNGG	1 cut(s)	49
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 295
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	2 cut(s)	81, 333
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	272, 295
BseNI	ACTGG	2 cut(s)	81, 333
BseXI	GCAGC	1 cut(s)	286
BseYI	CCCAGC	1 cut(s)	272
BshFI	GGCC	1 cut(s)	73
BshTI	ACCGGT	1 cut(s)	139
BsiSI	CCGG	3 cut(s)	85, 114, 140
BslI	CCNNNNNNNGG	2 cut(s)	272, 295
BsnI	GGCC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	73
BspPI	GGATC	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	81, 333
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	13, 330
Bst6I	CTCTTC	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 176, 308
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	83, 112
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	3 cut(s)	9, 74, 340
CfoI	GCGC	1 cut(s)	272
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	71, 145
CspAI	ACCGGT	1 cut(s)	139
CviAII	CATG	1 cut(s)	303
CviJI	RGCY	9 cut(s)	33, 73, 83, 98, 120, 134, 170, 299, 311
CviKI_1	RGCY	9 cut(s)	33, 73, 83, 98, 120, 134, 170, 299, 311
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	145
Eco47III	AGCGCT	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	220
FaeI	CATG	1 cut(s)	306
FaiI	YATR	5 cut(s)	214, 216, 304, 308, 349
FatI	CATG	1 cut(s)	302
FauNDI	CATATG	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	2 cut(s)	135, 267
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	1 cut(s)	300
GsaI	CCCAGC	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	3 cut(s)	85, 114, 140
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	1 cut(s)	306
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HpaII	CCGG	3 cut(s)	85, 114, 140
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	2 cut(s)	7, 145
Hpy188I	TCNGA	3 cut(s)	42, 50, 294
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	2 cut(s)	7, 145
HpyAV	CCTTC	2 cut(s)	187, 299
HpyCH4III	ACNGT	2 cut(s)	13, 330
HpyCH4V	TGCA	3 cut(s)	107, 218, 302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 176, 308
Hsp92II	CATG	1 cut(s)	306
HspAI	GCGC	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	7 cut(s)	62, 98, 127, 153, 194, 258, 346
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	2 cut(s)	135, 267
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	3 cut(s)	55, 155, 240
MflI	RGATCY	1 cut(s)	45
MluCI	AATT	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	3 cut(s)	44, 88, 224
Mph1103I	ATGCAT	1 cut(s)	220
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	1 cut(s)	221
MspI	CCGG	3 cut(s)	85, 114, 140
MspR9I	CCNGG	2 cut(s)	85, 114
MwoI	GCNNNNNNNGC	3 cut(s)	104, 176, 308
NciI	CCSGG	2 cut(s)	85, 114
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	1 cut(s)	306
NsiI	ATGCAT	1 cut(s)	220
NspI	RCATGY	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	288
PinAI	ACCGGT	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	272
PspPI	GGNCC	2 cut(s)	71, 145
PsuI	RGATCY	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	2 cut(s)	71, 145
ScrFI	CCNGG	2 cut(s)	85, 114
SetI	ASST	3 cut(s)	55, 150, 172
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	1 cut(s)	145
Sse9I	AATT	1 cut(s)	36
SspMI	CTAG	2 cut(s)	135, 267
StyD4I	CCNGG	2 cut(s)	83, 112
TaaI	ACNGT	2 cut(s)	13, 330
TasI	AATT	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	3 cut(s)	16, 81, 340
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	206
TspRI	CASTG	3 cut(s)	16, 81, 340
VpaK11BI	GGWCC	1 cut(s)	145
XceI	RCATGY	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	2 cut(s)	135, 267
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.