Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002505.1

Orthogroup ID

OG0001544

Physical Location & Seq

Genomic Coordinates Forward (+)

101654 .. 104498

Gene Structure 2845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002505.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atggcctttgcagaaatcgacgtgcacaaccttccggtcaccctatccagcacaatagcacatttagaactgacttactcatactgttatggatgggatgacaaacttcaggcatatgcattaaatggaagaggattagttgggggaagtttccaacttgattaccctagcgttggggcaacagaaatccttctaatggctgcatgtatggctgatggaacaactatactgtccaatgttgccagagaaccggaggtggttgatcttgctcgatttcttactaaaagtggggcctgtgtggaaggagcaggaagcaacaagcttgtcatcaagggaaaatcttatttgcatggttgtaaatgtactattgcacctgatcgtattgaagcaggcacatttatgcttgctgcagctattactcgctcattcatttcaatttcacctgtcattccttcccaagtttcctgtctgatgcaaaaactcttggccgctggttgcaaaataaggcaatgctctcatgataccttggaagtttcagcagtgtctcaatgtggtgagaatttgcgaggttttgaggttaagacagggccatttcccgggtttcctacagatctccaaccgcaaacaatggcactgctaaccacttggtttaagtcctgtagaagtctctatttgaaaagtgcatggctcatggtatgtgaagcttggagcaaaaattcaagtctgtgcaagctctgctctggtttcgggaaagataatagaaatggtttgtctggttcctgccttgctgcaactgacctcagaggtgggatatcattggtattagctgcattggctgcagaaggtactactgagatcagcggtgttgctcatattgtggttatgagaatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

297

Amino Acids

31.64

Weight (kDa)

7.45

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001544)

Species	Orthologous Gene IDs
malus_domestica	MD03G1241800.v1.1
prunus_persica	Prupe.4G167100_v2.0.a1 Prupe.4G167100_v2.0.a1
pyrus_communis	pycom03g18890
rosa_chinensis	RchiOBHm_Chr5g0030831 RchiOBHm_Chr5g0031211 RchiOBHm_Chr5g0031411 RchiOBHm_Chr7g0194341
rosa_laevigata	RLG00000002889 RLG00000009452 RLG00000010063 RLG00000020938 RLG00000025330 RLG00000029419 RLG00000033292
rosa_multiflora	Rmu_sc0002426.1_g000013 Rmu_sc0002505.1_g000024 Rmu_sc0004790.1_g000012 Rmu_sc0005543.1_g000001 Rmu_sc0014478.1_g000005 Rmu_sc0014478.1_g000006
rosa_roxburghii	Rroxscaffold_1G00039380 Rroxscaffold_1G00049410 Rroxscaffold_4G00315890
rosa_rugosa	Rorug05G0122800 Rorug05G0125100
rosa_samantha	Rh1BG113100 Rh1CG264100 Rh2BG469500 Rh2DG478900 Rh5AG213800 Rh5AG217800 Rh5BG213000 Rh5BG213100 Rh5BG217500 Rh5CG236700 Rh5CG239700 Rh5CG241300 Rh5DG217500 Rh5DG221000 Rh5DG222900 Rh5DG281900 Rh5DG502600 Rh6BG212100 Rh7AG059300 Rh7CG251400
rosa_wichuraiana	Rw0G012990 Rw0G015960 Rw5G019540 Rw5G019900 Rw5G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	489, 620, 861
AcoI	YGGCCR	1 cut(s)	486
AcsI	RAATTY	2 cut(s)	559, 715
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	2 cut(s)	364, 847
AfiI	CCNNNNNNNGG	3 cut(s)	173, 196, 596
AgsI	TTSAA	4 cut(s)	386, 435, 676, 720
AjiI	CACGTC	1 cut(s)	22
AluBI	AGCT	5 cut(s)	322, 413, 704, 733, 827
AluI	AGCT	5 cut(s)	322, 413, 704, 733, 827
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	2 cut(s)	549, 671
Alw44I	GTGCAC	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	596
AoxI	GGCC	4 cut(s)	3, 291, 486, 587
ApaLI	GTGCAC	1 cut(s)	23
ApeKI	GCWGC	6 cut(s)	200, 407, 410, 788, 827, 836
ApoI	RAATTY	2 cut(s)	559, 715
Asp700I	GAANNNNTTC	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	291, 587
AsuC2I	CCSGG	2 cut(s)	597, 598
AsuHPI	GGTGA	3 cut(s)	31, 432, 566
AvaI	CYCGRG	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	6 cut(s)	187, 394, 422, 775, 814, 823
BccI	CCATC	2 cut(s)	87, 209
BcnI	CCSGG	2 cut(s)	597, 598
BcoDI	GTCTC	2 cut(s)	549, 671
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	4 cut(s)	408, 606, 658, 837
BglII	AGATCT	1 cut(s)	610
BisI	GCNGC	7 cut(s)	201, 408, 411, 489, 789, 828, 837
BlsI	GCNGC	7 cut(s)	202, 409, 412, 490, 790, 829, 838
Bme1390I	CCNGG	2 cut(s)	597, 598
BmeT110I	CYCGRG	1 cut(s)	596
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	291, 587
BmiI	GGNNCC	2 cut(s)	292, 778
BmrFI	CCNGG	2 cut(s)	597, 598
BmsI	GCATC	1 cut(s)	462
BpuMI	CCSGG	2 cut(s)	597, 598
BsaJI	CCNNGG	2 cut(s)	525, 596
BsaWI	WCCGGW	2 cut(s)	34, 250
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 196, 596
Bse3DI	GCAATG	1 cut(s)	515
BseDI	CCNNGG	2 cut(s)	525, 596
BseGI	GGATG	2 cut(s)	98, 103
BseLI	CCNNNNNNNGG	3 cut(s)	173, 196, 596
BseMI	GCAATG	1 cut(s)	515
BseMII	CTCAG	2 cut(s)	814, 843
BseSI	GKGCMC	1 cut(s)	27
BseXI	GCAGC	6 cut(s)	187, 394, 422, 775, 814, 823
BshFI	GGCC	4 cut(s)	5, 293, 488, 589
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	596
BsiSI	CCGG	3 cut(s)	35, 251, 597
BslI	CCNNNNNNNGG	3 cut(s)	173, 196, 596
BsmAI	GTCTC	2 cut(s)	549, 671
BsnI	GGCC	4 cut(s)	5, 293, 488, 589
BsoBI	CYCGRG	1 cut(s)	596
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	4 cut(s)	262, 376, 610, 855
BspACI	CCGC	3 cut(s)	489, 620, 861
BspANI	GGCC	4 cut(s)	5, 293, 488, 589
BspCNI	CTCAG	2 cut(s)	813, 844
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	292, 778
BspMAI	CTGCAG	2 cut(s)	412, 841
BsrDI	GCAATG	1 cut(s)	515
BssECI	CCNNGG	2 cut(s)	525, 596
BssMI	GATC	4 cut(s)	262, 376, 610, 855
BssT1I	CCWWGG	1 cut(s)	525
Bst4CI	ACNGT	2 cut(s)	86, 231
Bst6I	CTCTTC	1 cut(s)	124
BstAPI	GCANNNNNTGC	2 cut(s)	735, 836
BstC8I	GCNNGC	3 cut(s)	391, 405, 731
BstDEI	CTNAG	2 cut(s)	800, 852
BstEII	GGTNACC	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	98, 103
BstKTI	GATC	4 cut(s)	265, 379, 613, 858
BstMAI	GTCTC	2 cut(s)	549, 671
BstMBI	GATC	4 cut(s)	262, 376, 610, 855
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 735, 833, 836
BstNSI	RCATGY	1 cut(s)	207
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	595, 596
BstSFI	CTRYAG	4 cut(s)	408, 606, 658, 837
BstSLI	GKGCMC	1 cut(s)	27
BstV1I	GCAGC	6 cut(s)	187, 394, 422, 775, 814, 823
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BsuRI	GGCC	4 cut(s)	5, 293, 488, 589
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	98, 103
BtsI	GCAGTG	2 cut(s)	546, 632
BtsIMutI	CAGTG	2 cut(s)	546, 632
Cac8I	GCNNGC	3 cut(s)	391, 405, 731
CciI	TCATGA	1 cut(s)	517
Cfr13I	GGNCC	2 cut(s)	291, 587
Cfr9I	CCCGGG	1 cut(s)	596
Csp6I	GTAC	2 cut(s)	363, 846
CviAII	CATG	5 cut(s)	204, 350, 518, 684, 691
CviQI	GTAC	2 cut(s)	363, 846
DdeI	CTNAG	2 cut(s)	800, 852
DpnI	GATC	4 cut(s)	264, 378, 612, 857
DpnII	GATC	4 cut(s)	262, 376, 610, 855
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	525
Eco32I	GATATC	1 cut(s)	813
Eco57I	CTGAAG	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	596
Eco91I	GGTNACC	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	291
EcoO65I	GGTNACC	1 cut(s)	37
EcoRV	GATATC	1 cut(s)	813
EcoT14I	CCWWGG	1 cut(s)	525
EcoT22I	ATGCAT	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	5 cut(s)	207, 353, 521, 687, 694
FatI	CATG	5 cut(s)	203, 349, 517, 683, 690
FauNDI	CATATG	1 cut(s)	115
Fnu4HI	GCNGC	7 cut(s)	201, 408, 411, 489, 789, 828, 837
FokI	GGATG	2 cut(s)	105, 110
Fsp4HI	GCNGC	7 cut(s)	201, 408, 411, 489, 789, 828, 837
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	7 cut(s)	201, 408, 411, 489, 789, 828, 837
HaeIII	GGCC	4 cut(s)	5, 293, 488, 589
HapII	CCGG	3 cut(s)	35, 251, 597
Hin1II	CATG	5 cut(s)	207, 353, 521, 687, 694
HindIII	AAGCTT	2 cut(s)	320, 702
HpaII	CCGG	3 cut(s)	35, 251, 597
HphI	GGTGA	3 cut(s)	31, 432, 566
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	471, 803
Hpy188III	TCNNGA	2 cut(s)	518, 748
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	5 cut(s)	41, 200, 296, 462, 836
HpyCH4III	ACNGT	2 cut(s)	86, 231
HpyCH4IV	ACGT	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 735, 833, 836
HpyF3I	CTNAG	2 cut(s)	800, 852
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	207, 353, 521, 687, 694
Kzo9I	GATC	4 cut(s)	262, 376, 610, 855
LmnI	GCTCC	2 cut(s)	305, 708
Lsp1109I	GCAGC	6 cut(s)	187, 394, 422, 775, 814, 823
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	4 cut(s)	264, 378, 612, 857
MboI	GATC	4 cut(s)	262, 376, 610, 855
MboII	GAAGA	1 cut(s)	141
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	3 cut(s)	435, 559, 715
MmeI	TCCRAC	2 cut(s)	178, 640
MnlI	CCTC	6 cut(s)	125, 247, 560, 568, 797, 809
Mph1103I	ATGCAT	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	3 cut(s)	122, 579, 651
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	2 cut(s)	491, 861
MspI	CCGG	3 cut(s)	35, 251, 597
MspR9I	CCNGG	2 cut(s)	597, 598
MwoI	GCNNNNNNNGC	4 cut(s)	209, 735, 833, 836
NciI	CCSGG	2 cut(s)	597, 598
NdeI	CATATG	1 cut(s)	115
NdeII	GATC	4 cut(s)	262, 376, 610, 855
NlaIII	CATG	5 cut(s)	207, 353, 521, 687, 694
NlaIV	GGNNCC	2 cut(s)	292, 778
NmuCI	GTSAC	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	121
NspI	RCATGY	1 cut(s)	207
PagI	TCATGA	1 cut(s)	517
PdmI	GAANNNNTTC	1 cut(s)	189
PkrI	GCNGC	7 cut(s)	202, 409, 412, 490, 790, 829, 838
PspEI	GGTNACC	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	292, 778
PspPI	GGNCC	2 cut(s)	291, 587
PstI	CTGCAG	2 cut(s)	412, 841
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	2 cut(s)	364, 847
RsaNI	GTAC	2 cut(s)	363, 846
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	3 cut(s)	122, 579, 651
SatI	GCNGC	7 cut(s)	201, 408, 411, 489, 789, 828, 837
Sau3AI	GATC	4 cut(s)	262, 376, 610, 855
Sau96I	GGNCC	2 cut(s)	291, 587
ScrFI	CCNGG	2 cut(s)	597, 598
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	1 cut(s)	462
SfcI	CTRYAG	4 cut(s)	408, 606, 658, 837
SmaI	CCCGGG	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	398
Sse9I	AATT	3 cut(s)	435, 559, 715
SsiI	CCGC	3 cut(s)	489, 620, 861
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	595, 596
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	2 cut(s)	86, 231
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	18, 271
TasI	AATT	3 cut(s)	435, 559, 715
TatI	WGTACW	1 cut(s)	362
TauI	GCSGC	1 cut(s)	491
Tru1I	TTAA	3 cut(s)	122, 579, 651
Tru9I	TTAA	3 cut(s)	122, 579, 651
TscAI	CASTG	2 cut(s)	546, 639
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	6 cut(s)	200, 407, 410, 788, 827, 836
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	418
TspMI	CCCGGG	1 cut(s)	596
TspRI	CASTG	2 cut(s)	546, 639
VneI	GTGCAC	1 cut(s)	23
XapI	RAATTY	2 cut(s)	559, 715
XceI	RCATGY	1 cut(s)	207
XmaI	CCCGGG	1 cut(s)	596
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.