EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD03G1241800.v1.1 |
| prunus_persica | Prupe.4G167100_v2.0.a1 Prupe.4G167100_v2.0.a1 |
| pyrus_communis | pycom03g18890 |
| rosa_chinensis | RchiOBHm_Chr5g0030831 RchiOBHm_Chr5g0031211 RchiOBHm_Chr5g0031411 RchiOBHm_Chr7g0194341 |
| rosa_laevigata | RLG00000002889 RLG00000009452 RLG00000010063 RLG00000020938 RLG00000025330 RLG00000029419 RLG00000033292 |
| rosa_multiflora | Rmu_sc0002426.1_g000013 Rmu_sc0002505.1_g000024 Rmu_sc0004790.1_g000012 Rmu_sc0005543.1_g000001 Rmu_sc0014478.1_g000005 Rmu_sc0014478.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00039380 Rroxscaffold_1G00049410 Rroxscaffold_4G00315890 |
| rosa_rugosa | Rorug05G0122800 Rorug05G0125100 |
| rosa_samantha | Rh1BG113100 Rh1CG264100 Rh2BG469500 Rh2DG478900 Rh5AG213800 Rh5AG217800 Rh5BG213000 Rh5BG213100 Rh5BG217500 Rh5CG236700 Rh5CG239700 Rh5CG241300 Rh5DG217500 Rh5DG221000 Rh5DG222900 Rh5DG281900 Rh5DG502600 Rh6BG212100 Rh7AG059300 Rh7CG251400 |
| rosa_wichuraiana | Rw0G012990 Rw0G015960 Rw5G019540 Rw5G019900 Rw5G027790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 114 |
| AccII | CGCG | 1 cut(s) | 446 |
| AciI | CCGC | 2 cut(s) | 444, 446 |
| AcoI | YGGCCR | 1 cut(s) | 441 |
| AfaI | GTAC | 2 cut(s) | 319, 533 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 114, 182, 205 |
| AgsI | TTSAA | 2 cut(s) | 341, 390 |
| AluBI | AGCT | 3 cut(s) | 38, 368, 524 |
| AluI | AGCT | 3 cut(s) | 38, 368, 524 |
| Alw26I | GTCTC | 1 cut(s) | 90 |
| AoxI | GGCC | 1 cut(s) | 441 |
| ApeKI | GCWGC | 6 cut(s) | 35, 209, 362, 365, 485, 524 |
| AsuHPI | GGTGA | 1 cut(s) | 387 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 22, 54 |
| BbvI | GCAGC | 6 cut(s) | 47, 196, 349, 377, 472, 511 |
| BccI | CCATC | 2 cut(s) | 108, 218 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 41, 75 |
| BcoDI | GTCTC | 1 cut(s) | 90 |
| BfaI | CTAG | 2 cut(s) | 153, 177 |
| BfmI | CTRYAG | 2 cut(s) | 9, 363 |
| BisI | GCNGC | 7 cut(s) | 36, 210, 363, 366, 444, 486, 525 |
| BlsI | GCNGC | 7 cut(s) | 37, 211, 364, 367, 445, 487, 526 |
| BmiI | GGNNCC | 1 cut(s) | 475 |
| BmsI | GCATC | 1 cut(s) | 417 |
| BsaJI | CCNNGG | 2 cut(s) | 108, 444 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 114, 182, 205 |
| BseDI | CCNNGG | 2 cut(s) | 108, 444 |
| BseGI | GGATG | 1 cut(s) | 119 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 114, 182, 205 |
| BseMII | CTCAG | 1 cut(s) | 511 |
| BseX3I | CGGCCG | 1 cut(s) | 441 |
| BseXI | GCAGC | 6 cut(s) | 47, 196, 349, 377, 472, 511 |
| Bsh1236I | CGCG | 1 cut(s) | 446 |
| Bsh1285I | CGRYCG | 1 cut(s) | 444 |
| BshFI | GGCC | 1 cut(s) | 443 |
| BsiEI | CGRYCG | 1 cut(s) | 444 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 114, 182, 205 |
| BsmAI | GTCTC | 1 cut(s) | 90 |
| BsnI | GGCC | 1 cut(s) | 443 |
| Bsp143I | GATC | 2 cut(s) | 271, 331 |
| BspACI | CCGC | 2 cut(s) | 444, 446 |
| BspANI | GGCC | 1 cut(s) | 443 |
| BspCNI | CTCAG | 1 cut(s) | 510 |
| BspFNI | CGCG | 1 cut(s) | 446 |
| BspLI | GGNNCC | 1 cut(s) | 475 |
| BspMAI | CTGCAG | 2 cut(s) | 13, 367 |
| BssECI | CCNNGG | 2 cut(s) | 108, 444 |
| BssMI | GATC | 2 cut(s) | 271, 331 |
| BssT1I | CCWWGG | 1 cut(s) | 108 |
| Bst4CI | ACNGT | 1 cut(s) | 240 |
| Bst6I | CTCTTC | 1 cut(s) | 140 |
| BstC8I | GCNNGC | 2 cut(s) | 346, 360 |
| BstDEI | CTNAG | 1 cut(s) | 497 |
| BstDSI | CCRYGG | 1 cut(s) | 444 |
| BstF5I | GGATG | 1 cut(s) | 119 |
| BstFNI | CGCG | 1 cut(s) | 446 |
| BstKTI | GATC | 2 cut(s) | 274, 334 |
| BstMAI | GTCTC | 1 cut(s) | 90 |
| BstMBI | GATC | 2 cut(s) | 271, 331 |
| BstMCI | CGRYCG | 1 cut(s) | 444 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 218 |
| BstNSI | RCATGY | 1 cut(s) | 216 |
| BstSFI | CTRYAG | 2 cut(s) | 9, 363 |
| BstUI | CGCG | 1 cut(s) | 446 |
| BstV1I | GCAGC | 6 cut(s) | 47, 196, 349, 377, 472, 511 |
| BstZI | CGGCCG | 1 cut(s) | 441 |
| BsuRI | GGCC | 1 cut(s) | 443 |
| BtgI | CCRYGG | 1 cut(s) | 444 |
| BtsCI | GGATG | 1 cut(s) | 119 |
| BtsI | GCAGTG | 1 cut(s) | 6 |
| BtsIMutI | CAGTG | 1 cut(s) | 6 |
| Cac8I | GCNNGC | 2 cut(s) | 346, 360 |
| Cfr42I | CCGCGG | 1 cut(s) | 447 |
| Csp6I | GTAC | 2 cut(s) | 318, 532 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 442, 477 |
| CviAII | CATG | 3 cut(s) | 213, 305, 528 |
| CviJI | RGCY | 7 cut(s) | 24, 38, 209, 221, 368, 443, 524 |
| CviKI_1 | RGCY | 7 cut(s) | 24, 38, 209, 221, 368, 443, 524 |
| CviQI | GTAC | 2 cut(s) | 318, 532 |
| DdeI | CTNAG | 1 cut(s) | 497 |
| DpnI | GATC | 2 cut(s) | 273, 333 |
| DpnII | GATC | 2 cut(s) | 271, 331 |
| EaeI | YGGCCR | 1 cut(s) | 441 |
| EagI | CGGCCG | 1 cut(s) | 441 |
| Eam1104I | CTCTTC | 1 cut(s) | 140 |
| EarI | CTCTTC | 1 cut(s) | 140 |
| EclXI | CGGCCG | 1 cut(s) | 441 |
| Eco130I | CCWWGG | 1 cut(s) | 108 |
| Eco32I | GATATC | 1 cut(s) | 510 |
| Eco52I | CGGCCG | 1 cut(s) | 441 |
| EcoRV | GATATC | 1 cut(s) | 510 |
| EcoT14I | CCWWGG | 1 cut(s) | 108 |
| EcoT22I | ATGCAT | 1 cut(s) | 137 |
| ErhI | CCWWGG | 1 cut(s) | 108 |
| FaeI | CATG | 3 cut(s) | 216, 308, 531 |
| FatI | CATG | 3 cut(s) | 212, 304, 527 |
| FauI | CCCGC | 1 cut(s) | 439 |
| FauNDI | CATATG | 1 cut(s) | 131 |
| Fnu4HI | GCNGC | 7 cut(s) | 36, 210, 363, 366, 444, 486, 525 |
| FokI | GGATG | 1 cut(s) | 126 |
| Fsp4HI | GCNGC | 7 cut(s) | 36, 210, 363, 366, 444, 486, 525 |
| FspBI | CTAG | 2 cut(s) | 153, 177 |
| GluI | GCNGC | 7 cut(s) | 36, 210, 363, 366, 444, 486, 525 |
| HaeIII | GGCC | 1 cut(s) | 443 |
| Hin1II | CATG | 3 cut(s) | 216, 308, 531 |
| HphI | GGTGA | 1 cut(s) | 387 |
| Hpy188I | TCNGA | 2 cut(s) | 426, 500 |
| HpyAV | CCTTC | 3 cut(s) | 14, 209, 417 |
| HpyCH4III | ACNGT | 1 cut(s) | 240 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 218 |
| HpyF3I | CTNAG | 1 cut(s) | 497 |
| Hsp92II | CATG | 3 cut(s) | 216, 308, 531 |
| KspI | CCGCGG | 1 cut(s) | 447 |
| Kzo9I | GATC | 2 cut(s) | 271, 331 |
| Lsp1109I | GCAGC | 6 cut(s) | 47, 196, 349, 377, 472, 511 |
| LweI | GCATC | 1 cut(s) | 417 |
| MaeI | CTAG | 2 cut(s) | 153, 177 |
| MaeIII | GTNAC | 1 cut(s) | 62 |
| MalI | GATC | 2 cut(s) | 273, 333 |
| MboI | GATC | 2 cut(s) | 271, 331 |
| MboII | GAAGA | 2 cut(s) | 157, 266 |
| MluCI | AATT | 1 cut(s) | 390 |
| MmeI | TCCRAC | 1 cut(s) | 187 |
| MnlI | CCTC | 4 cut(s) | 141, 256, 494, 506 |
| Mph1103I | ATGCAT | 1 cut(s) | 137 |
| MseI | TTAA | 1 cut(s) | 138 |
| MslI | CAYNNNNRTG | 2 cut(s) | 303, 353 |
| MspA1I | CMGCKG | 1 cut(s) | 446 |
| MvnI | CGCG | 1 cut(s) | 446 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 218 |
| NdeI | CATATG | 1 cut(s) | 131 |
| NdeII | GATC | 2 cut(s) | 271, 331 |
| NlaIII | CATG | 3 cut(s) | 216, 308, 531 |
| NlaIV | GGNNCC | 1 cut(s) | 475 |
| NmeAIII | GCCGAG | 1 cut(s) | 419 |
| NsiI | ATGCAT | 1 cut(s) | 137 |
| NspI | RCATGY | 1 cut(s) | 216 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 114 |
| PkrI | GCNGC | 7 cut(s) | 37, 211, 364, 367, 445, 487, 526 |
| PspN4I | GGNNCC | 1 cut(s) | 475 |
| PstI | CTGCAG | 2 cut(s) | 13, 367 |
| RsaI | GTAC | 2 cut(s) | 319, 533 |
| RsaNI | GTAC | 2 cut(s) | 318, 532 |
| RseI | CAYNNNNRTG | 2 cut(s) | 303, 353 |
| SacII | CCGCGG | 1 cut(s) | 447 |
| SaqAI | TTAA | 1 cut(s) | 138 |
| SatI | GCNGC | 7 cut(s) | 36, 210, 363, 366, 444, 486, 525 |
| Sau3AI | GATC | 2 cut(s) | 271, 331 |
| SetI | ASST | 8 cut(s) | 40, 267, 331, 370, 400, 498, 505, 526 |
| SfaNI | GCATC | 1 cut(s) | 417 |
| SfcI | CTRYAG | 2 cut(s) | 9, 363 |
| Sfr303I | CCGCGG | 1 cut(s) | 447 |
| SgrBI | CCGCGG | 1 cut(s) | 447 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 303, 353 |
| Sse9I | AATT | 1 cut(s) | 390 |
| SsiI | CCGC | 2 cut(s) | 444, 446 |
| SspMI | CTAG | 2 cut(s) | 153, 177 |
| StyI | CCWWGG | 1 cut(s) | 108 |
| TaaI | ACNGT | 1 cut(s) | 240 |
| TasI | AATT | 1 cut(s) | 390 |
| TatI | WGTACW | 1 cut(s) | 317 |
| TauI | GCSGC | 1 cut(s) | 446 |
| Tru1I | TTAA | 1 cut(s) | 138 |
| Tru9I | TTAA | 1 cut(s) | 138 |
| TscAI | CASTG | 1 cut(s) | 13 |
| TseI | GCWGC | 6 cut(s) | 35, 209, 362, 365, 485, 524 |
| TspDTI | ATGAA | 2 cut(s) | 33, 373 |
| TspRI | CASTG | 1 cut(s) | 13 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 114 |
| XceI | RCATGY | 1 cut(s) | 216 |
| XspI | CTAG | 2 cut(s) | 153, 177 |
| Zsp2I | ATGCAT | 1 cut(s) | 137 |