Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014478.1

Orthogroup ID

OG0001544

Physical Location & Seq

Genomic Coordinates Reverse (-)

13291 .. 13669

Gene Structure 379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014478.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ctgcggaagcttggagcaaaaattcaagtctgtgcaagctctactctggtttttgggaaagataatagaagtggtttctctggttcctgccttgctgcaactgaccttagaggtgggatatcattggtattagctgcattggctgcagaaggtactactgagatcagcagtgttgcccatattgaccgtggttatgagaatgtagatacacaacttcatatgctgggagccgatatcaaaagattaacagcccctgcttcttcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

88

Amino Acids

9.08

Weight (kDa)

8.03

Isoelectric Point (pI)

31.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001544)

Species	Orthologous Gene IDs
malus_domestica	MD03G1241800.v1.1
prunus_persica	Prupe.4G167100_v2.0.a1 Prupe.4G167100_v2.0.a1
pyrus_communis	pycom03g18890
rosa_chinensis	RchiOBHm_Chr5g0030831 RchiOBHm_Chr5g0031211 RchiOBHm_Chr5g0031411 RchiOBHm_Chr7g0194341
rosa_laevigata	RLG00000002889 RLG00000009452 RLG00000010063 RLG00000020938 RLG00000025330 RLG00000029419 RLG00000033292
rosa_multiflora	Rmu_sc0002426.1_g000013 Rmu_sc0002505.1_g000024 Rmu_sc0004790.1_g000012 Rmu_sc0005543.1_g000001 Rmu_sc0014478.1_g000005 Rmu_sc0014478.1_g000006
rosa_roxburghii	Rroxscaffold_1G00039380 Rroxscaffold_1G00049410 Rroxscaffold_4G00315890
rosa_rugosa	Rorug05G0122800 Rorug05G0125100
rosa_samantha	Rh1BG113100 Rh1CG264100 Rh2BG469500 Rh2DG478900 Rh5AG213800 Rh5AG217800 Rh5BG213000 Rh5BG213100 Rh5BG217500 Rh5CG236700 Rh5CG239700 Rh5CG241300 Rh5DG217500 Rh5DG221000 Rh5DG222900 Rh5DG281900 Rh5DG502600 Rh6BG212100 Rh7AG059300 Rh7CG251400
rosa_wichuraiana	Rw0G012990 Rw0G015960 Rw5G019540 Rw5G019900 Rw5G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	21
AfaI	GTAC	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	26
AluBI	AGCT	3 cut(s)	10, 39, 134
AluI	AGCT	3 cut(s)	10, 39, 134
AlwNI	CAGNNNCTG	1 cut(s)	254
ApeKI	GCWGC	3 cut(s)	95, 134, 143
ApoI	RAATTY	1 cut(s)	21
BbvI	GCAGC	3 cut(s)	82, 121, 130
BfaI	CTAG	1 cut(s)	265
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	3 cut(s)	96, 135, 144
BlsI	GCNGC	3 cut(s)	97, 136, 145
BmiI	GGNNCC	2 cut(s)	85, 229
BsaJI	CCNNGG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	150
BseXI	GCAGC	3 cut(s)	82, 121, 130
BseYI	CCCAGC	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	1 cut(s)	4
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	85, 229
BspMAI	CTGCAG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	107, 159
BstDSI	CCRYGG	1 cut(s)	187
BstKTI	GATC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	162
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 143
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	82, 121, 130
BtgI	CCRYGG	1 cut(s)	187
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	153
CviJI	RGCY	6 cut(s)	10, 39, 134, 143, 230, 251
CviKI_1	RGCY	6 cut(s)	10, 39, 134, 143, 230, 251
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	2 cut(s)	107, 159
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
Eco32I	GATATC	2 cut(s)	120, 235
EcoRV	GATATC	2 cut(s)	120, 235
FaiI	YATR	4 cut(s)	180, 195, 219, 221
FauNDI	CATATG	1 cut(s)	219
Fnu4HI	GCNGC	3 cut(s)	96, 135, 144
Fsp4HI	GCNGC	3 cut(s)	96, 135, 144
FspBI	CTAG	1 cut(s)	265
GluI	GCNGC	3 cut(s)	96, 135, 144
GsaI	CCCAGC	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4V	TGCA	4 cut(s)	35, 98, 137, 146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 143
HpyF3I	CTNAG	2 cut(s)	107, 159
Kzo9I	GATC	1 cut(s)	162
LmnI	GCTCC	2 cut(s)	14, 227
LpnPI	CCDG	4 cut(s)	32, 66, 100, 209
Lsp1109I	GCAGC	3 cut(s)	82, 121, 130
MaeI	CTAG	1 cut(s)	265
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	1 cut(s)	252
MluCI	AATT	1 cut(s)	21
MnlI	CCTC	1 cut(s)	104
MseI	TTAA	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	140, 143
NdeI	CATATG	1 cut(s)	219
NdeII	GATC	1 cut(s)	162
NlaIV	GGNNCC	2 cut(s)	85, 229
PkrI	GCNGC	3 cut(s)	97, 136, 145
PspFI	CCCAGC	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	85, 229
PstI	CTGCAG	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	3 cut(s)	96, 135, 144
Sau3AI	GATC	1 cut(s)	162
SetI	ASST	6 cut(s)	12, 41, 108, 115, 136, 154
SfcI	CTRYAG	1 cut(s)	144
SgeI	CNNG	9 cut(s)	23, 38, 48, 59, 93, 99, 104, 200, 236
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	188
TasI	AATT	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	3 cut(s)	95, 134, 143
TspDTI	ATGAA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	175
XapI	RAATTY	1 cut(s)	21
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XspI	CTAG	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.