Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001544

Physical Location & Seq

Genomic Coordinates Forward (+)

11123371 .. 11123787

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0125100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTCTGGGGCCATAAATCTAGTAGTGTCTACCACCATGCAAATTGTTCATCGAGATGTCAAGGCAACGACTATACTGTTGGATGAGAAACTTACGGCCAAAGTGTCGGACTTCGGAGCTTCAAAACTAGTTCCTGACGACAAAACTCAACTTTCAACTTTAGTGCAGGGGACAATGGGATACTTGGACCCTGAATATCTTCAATCCAACACACTAATTACTGTTTTAAGAGGTTACCTTGCTAATGAGATATACCTTGCTAATGAGATATACCTAATTGAAAATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

96

Amino Acids

10.61

Weight (kDa)

4.68

Isoelectric Point (pI)

24.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	13 - 71	1.4e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	13 - 71	1.1e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001544)

Species	Orthologous Gene IDs
malus_domestica	MD03G1241800.v1.1
prunus_persica	Prupe.4G167100_v2.0.a1 Prupe.4G167100_v2.0.a1
pyrus_communis	pycom03g18890
rosa_chinensis	RchiOBHm_Chr5g0030831 RchiOBHm_Chr5g0031211 RchiOBHm_Chr5g0031411 RchiOBHm_Chr7g0194341
rosa_laevigata	RLG00000002889 RLG00000009452 RLG00000010063 RLG00000020938 RLG00000025330 RLG00000029419 RLG00000033292
rosa_multiflora	Rmu_sc0002426.1_g000013 Rmu_sc0002505.1_g000024 Rmu_sc0004790.1_g000012 Rmu_sc0005543.1_g000001 Rmu_sc0014478.1_g000005 Rmu_sc0014478.1_g000006
rosa_roxburghii	Rroxscaffold_1G00039380 Rroxscaffold_1G00049410 Rroxscaffold_4G00315890
rosa_rugosa	Rorug05G0122800 Rorug05G0125100
rosa_samantha	Rh1BG113100 Rh1CG264100 Rh2BG469500 Rh2DG478900 Rh5AG213800 Rh5AG217800 Rh5BG213000 Rh5BG213100 Rh5BG217500 Rh5CG236700 Rh5CG239700 Rh5CG241300 Rh5DG217500 Rh5DG221000 Rh5DG222900 Rh5DG281900 Rh5DG502600 Rh6BG212100 Rh7AG059300 Rh7CG251400
rosa_wichuraiana	Rw0G012990 Rw0G015960 Rw5G019540 Rw5G019900 Rw5G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	123, 156, 203, 281
AhlI	ACTAGT	1 cut(s)	127
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
AoxI	GGCC	2 cut(s)	9, 96
Asp700I	GAANNNNTTC	1 cut(s)	198
AspS9I	GGNCC	2 cut(s)	9, 187
AvaII	GGWCC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	111
BciVI	GTATCC	1 cut(s)	173
BcuI	ACTAGT	1 cut(s)	127
BfaI	CTAG	2 cut(s)	20, 128
BfuI	GTATCC	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	2 cut(s)	9, 187
BmiI	GGNNCC	2 cut(s)	10, 189
BseGI	GGATG	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	185
BshFI	GGCC	2 cut(s)	11, 98
BslFI	GGGAC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	11, 98
BspANI	GGCC	2 cut(s)	11, 98
BspLI	GGNNCC	2 cut(s)	10, 189
Bst4CI	ACNGT	2 cut(s)	78, 223
BstEII	GGTNACC	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	88
BstPI	GGTNACC	1 cut(s)	233
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	11, 98
BtsCI	GGATG	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	9, 187
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	3 cut(s)	11, 98, 119
CviKI_1	RGCY	3 cut(s)	11, 98, 119
EaeI	YGGCCR	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	187
Eco91I	GGTNACC	1 cut(s)	233
EcoO65I	GGTNACC	1 cut(s)	233
FaeI	CATG	1 cut(s)	40
FaiI	YATR	5 cut(s)	14, 38, 74, 253, 271
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	29
FokI	GGATG	1 cut(s)	95
FspBI	CTAG	2 cut(s)	20, 128
HaeIII	GGCC	2 cut(s)	11, 98
Hin1II	CATG	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	2 cut(s)	109, 116
Hpy188III	TCNNGA	2 cut(s)	53, 134
Hpy8I	GTNNAC	1 cut(s)	30
HpyCH4III	ACNGT	2 cut(s)	78, 223
HpyCH4V	TGCA	2 cut(s)	40, 166
Hsp92II	CATG	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	3 cut(s)	147, 152, 204
MaeI	CTAG	2 cut(s)	20, 128
MaeIII	GTNAC	1 cut(s)	233
MboII	GAAGA	1 cut(s)	191
MluCI	AATT	3 cut(s)	42, 216, 276
MmeI	TCCRAC	3 cut(s)	60, 87, 231
MnlI	CCTC	1 cut(s)	224
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	54
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	2 cut(s)	10, 189
PdmI	GAANNNNTTC	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	233
PspN4I	GGNNCC	2 cut(s)	10, 189
PspPI	GGNCC	2 cut(s)	9, 187
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	227
Sau96I	GGNCC	2 cut(s)	9, 187
SetI	ASST	5 cut(s)	121, 235, 240, 258, 276
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	54
SpeI	ACTAGT	1 cut(s)	127
Sse9I	AATT	3 cut(s)	42, 216, 276
SspMI	CTAG	2 cut(s)	20, 128
TaaI	ACNGT	2 cut(s)	78, 223
TaqI	TCGA	1 cut(s)	52
TasI	AATT	3 cut(s)	42, 216, 276
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	2 cut(s)	20, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.