Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001544

Physical Location & Seq

Genomic Coordinates Reverse (-)

25007464 .. 25009827

Gene Structure 2364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31067

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCTGCATGTATGGCTGATGGAACAACTATACTGTCCAGTGTTGCCAGACAGGAAGCAACAAAGTTTGTCATCAAGGGAAAATCTTATTTTCATGGTTGTAAATGTACTATTGCACCTGATCGTATTGAAGCAGGCACGTTTTTGCTTGCTGCAGCTATTGCTCGCTCATTCATTTCAATTTCACCCGTCATTCCTTCCCAAGTTTCCTGTCTGATGCAAAAACTCTTGGCCGCTGGTTGCAAAATAAGGCAATGCTCTCATGATACCTTGGAAGTATTTTCAGCAGTGTCTCAATGTGGTGAGAATTTGCGAGGTTTTAAGGTTAAGACAAGACCATTTCCCTGGTTTCCTAAAGATCTCCAACCGCAAACAATGGCCCTGCTAACCACGTGCAATGGTTTAAGTCCTGTAGAAGAGTCTGTATTTGAAAAGCGCATGGCAAATGTAAACGAACTGCGGAAGCTTGGAGCAAAAATTCAAGTCTGTGCAAGCTCTGCTCTGGTTTTCGGGAAAGATAATAGAAGTGGTTTGTCTGGTTCCTGCCTTGCTGCAACTGACCTCAGAGGTGGGATATCATTGGTATTAGCTGCATTGGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

201

Amino Acids

21.38

Weight (kDa)

9.19

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPSP_synthase	PF00275	18 - 200	2e-27	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001544)

Species	Orthologous Gene IDs
malus_domestica	MD03G1241800.v1.1
prunus_persica	Prupe.4G167100_v2.0.a1 Prupe.4G167100_v2.0.a1
pyrus_communis	pycom03g18890
rosa_chinensis	RchiOBHm_Chr5g0030831 RchiOBHm_Chr5g0031211 RchiOBHm_Chr5g0031411 RchiOBHm_Chr7g0194341
rosa_laevigata	RLG00000002889 RLG00000009452 RLG00000010063 RLG00000020938 RLG00000025330 RLG00000029419 RLG00000033292
rosa_multiflora	Rmu_sc0002426.1_g000013 Rmu_sc0002505.1_g000024 Rmu_sc0004790.1_g000012 Rmu_sc0005543.1_g000001 Rmu_sc0014478.1_g000005 Rmu_sc0014478.1_g000006
rosa_roxburghii	Rroxscaffold_1G00039380 Rroxscaffold_1G00049410 Rroxscaffold_4G00315890
rosa_rugosa	Rorug05G0122800 Rorug05G0125100
rosa_samantha	Rh1BG113100 Rh1CG264100 Rh2BG469500 Rh2DG478900 Rh5AG213800 Rh5AG217800 Rh5BG213000 Rh5BG213100 Rh5BG217500 Rh5CG236700 Rh5CG239700 Rh5CG241300 Rh5DG217500 Rh5DG221000 Rh5DG222900 Rh5DG281900 Rh5DG502600 Rh6BG212100 Rh7AG059300 Rh7CG251400
rosa_wichuraiana	Rw0G012990 Rw0G015960 Rw5G019540 Rw5G019900 Rw5G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	234, 368, 460
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	2 cut(s)	307, 477
AcvI	CACGTG	1 cut(s)	393
AfaI	GTAC	1 cut(s)	109
AgsI	TTSAA	4 cut(s)	131, 180, 431, 482
AjnI	CCWGG	1 cut(s)	344
AluBI	AGCT	4 cut(s)	158, 466, 495, 590
AluI	AGCT	4 cut(s)	158, 466, 495, 590
Alw26I	GTCTC	1 cut(s)	297
AoxI	GGCC	2 cut(s)	231, 378
ApeKI	GCWGC	6 cut(s)	5, 152, 155, 551, 590, 599
ApoI	RAATTY	2 cut(s)	307, 477
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	2 cut(s)	177, 314
BbrPI	CACGTG	1 cut(s)	393
BbvI	GCAGC	5 cut(s)	139, 167, 538, 577, 586
BccI	CCATC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	297
BfmI	CTRYAG	2 cut(s)	153, 411
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	7 cut(s)	6, 153, 156, 234, 552, 591, 600
BlsI	GCNGC	7 cut(s)	7, 154, 157, 235, 553, 592, 601
Bme1390I	CCNGG	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	1 cut(s)	541
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	270, 344
Bse1I	ACTGG	1 cut(s)	39
Bse3DI	GCAATG	2 cut(s)	260, 403
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	2 cut(s)	270, 344
BseMI	GCAATG	2 cut(s)	260, 403
BseMII	CTCAG	1 cut(s)	577
BseNI	ACTGG	1 cut(s)	39
BseXI	GCAGC	5 cut(s)	139, 167, 538, 577, 586
BshFI	GGCC	2 cut(s)	233, 380
BsmAI	GTCTC	1 cut(s)	297
BsnI	GGCC	2 cut(s)	233, 380
Bsp143I	GATC	2 cut(s)	121, 358
BspACI	CCGC	3 cut(s)	234, 368, 460
BspANI	GGCC	2 cut(s)	233, 380
BspCNI	CTCAG	1 cut(s)	576
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	541
BspMAI	CTGCAG	1 cut(s)	157
BsrDI	GCAATG	2 cut(s)	260, 403
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	270, 344
BssMI	GATC	2 cut(s)	121, 358
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	411
BstAPI	GCANNNNNTGC	3 cut(s)	161, 497, 599
BstBAI	YACGTR	1 cut(s)	393
BstC8I	GCNNGC	4 cut(s)	136, 150, 166, 493
BstDEI	CTNAG	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	2 cut(s)	124, 361
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	2 cut(s)	121, 358
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 161, 497, 596, 599
BstNI	CCWGG	1 cut(s)	346
BstNSI	RCATGY	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	2 cut(s)	153, 411
BstV1I	GCAGC	5 cut(s)	139, 167, 538, 577, 586
BstX2I	RGATCY	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	233, 380
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	46, 294
Cac8I	GCNNGC	4 cut(s)	136, 150, 166, 493
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	4 cut(s)	9, 95, 263, 439
CviJI	RGCY	9 cut(s)	5, 17, 158, 233, 380, 466, 495, 590, 599
CviKI_1	RGCY	9 cut(s)	5, 17, 158, 233, 380, 466, 495, 590, 599
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	1 cut(s)	563
DpnI	GATC	2 cut(s)	123, 360
DpnII	GATC	2 cut(s)	121, 358
EaeI	YGGCCR	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	270
Eco32I	GATATC	1 cut(s)	576
Eco72I	CACGTG	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	344
EcoRV	GATATC	1 cut(s)	576
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	4 cut(s)	12, 98, 266, 442
FaiI	YATR	7 cut(s)	10, 14, 32, 96, 264, 440, 604
FatI	CATG	4 cut(s)	8, 94, 262, 438
Fnu4HI	GCNGC	7 cut(s)	6, 153, 156, 234, 552, 591, 600
Fsp4HI	GCNGC	7 cut(s)	6, 153, 156, 234, 552, 591, 600
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	7 cut(s)	6, 153, 156, 234, 552, 591, 600
HaeIII	GGCC	2 cut(s)	233, 380
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	4 cut(s)	12, 98, 266, 442
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	1 cut(s)	419
HphI	GGTGA	2 cut(s)	177, 314
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	2 cut(s)	216, 566
Hpy188III	TCNNGA	2 cut(s)	263, 511
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	2 cut(s)	140, 392
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 161, 497, 596, 599
HpyF3I	CTNAG	1 cut(s)	563
HpySE526I	ACGT	2 cut(s)	140, 392
Hsp92II	CATG	4 cut(s)	12, 98, 266, 442
HspAI	GCGC	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	121, 358
LmnI	GCTCC	1 cut(s)	470
Lsp1109I	GCAGC	5 cut(s)	139, 167, 538, 577, 586
LweI	GCATC	1 cut(s)	207
MaeII	ACGT	2 cut(s)	140, 392
MalI	GATC	2 cut(s)	123, 360
MboI	GATC	2 cut(s)	121, 358
MboII	GAAGA	1 cut(s)	428
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	3 cut(s)	180, 307, 477
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	3 cut(s)	308, 560, 572
MseI	TTAA	3 cut(s)	321, 327, 404
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	346
MwoI	GCNNNNNNNGC	5 cut(s)	14, 161, 497, 596, 599
NdeII	GATC	2 cut(s)	121, 358
NlaIII	CATG	4 cut(s)	12, 98, 266, 442
NlaIV	GGNNCC	1 cut(s)	541
NspI	RCATGY	1 cut(s)	12
PagI	TCATGA	1 cut(s)	262
PkrI	GCNGC	7 cut(s)	7, 154, 157, 235, 553, 592, 601
PleI	GAGTC	1 cut(s)	427
PmaCI	CACGTG	1 cut(s)	393
PmlI	CACGTG	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	427
Ppu21I	YACGTR	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	344
PspCI	CACGTG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	541
PspPI	GGNCC	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SaqAI	TTAA	3 cut(s)	321, 327, 404
SatI	GCNGC	7 cut(s)	6, 153, 156, 234, 552, 591, 600
Sau3AI	GATC	2 cut(s)	121, 358
Sau96I	GGNCC	1 cut(s)	379
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	346
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	2 cut(s)	153, 411
Sse9I	AATT	3 cut(s)	180, 307, 477
SsiI	CCGC	3 cut(s)	234, 368, 460
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	2 cut(s)	143, 395
TasI	AATT	3 cut(s)	180, 307, 477
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	1 cut(s)	236
Tru1I	TTAA	3 cut(s)	321, 327, 404
Tru9I	TTAA	3 cut(s)	321, 327, 404
TscAI	CASTG	2 cut(s)	46, 294
TseI	GCWGC	6 cut(s)	5, 152, 155, 551, 590, 599
TspDTI	ATGAA	2 cut(s)	83, 163
TspRI	CASTG	2 cut(s)	46, 294
XapI	RAATTY	2 cut(s)	307, 477
XceI	RCATGY	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.