Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005543.1

Orthogroup ID

OG0001544

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3255

Gene Structure 3255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005543.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1025 bp

cggacgggatcaccagcagcggtgaagataccaacttcaccgaggacctcaccgatgctggggctgaaatccaaagcagagtatgtggtggctctggaaacgacaagtcgtctagcactaaaccccactgccgtcgatcgcaaagccgccgcggcctcagaacccgattcgccgtcgctgatgacgtcttgagtttttccgatccacaccatgagtttcatcttcgcaaacagaaaacacccgcaggtaaaataggaggcattgctgtggttgatttggatcgagagaggaaagggatggagtctaggatggatcagtatgagctgatggagcagatcggccggggagctttcggagccgcgattttggttcatcacaaggctgagaagaagaagtatgtgttgaagaagatccggcttgcgaggcagacggagcggtgccggagatctgctcatcaagaggcatatgcattaaatggaagaggattagttgggggaagtttccaacttgattaccctagtgttggggcaacagaaacccttctaatggctgcatgtatggctgatggaacaactatactgtccaatgttgccagagaaccagaggtggttgatcttgctcgatttctgactaaaagtggggcctgtgtggaaggagcaggaagcttgacatcaagggaaaatctcatttgcatggtttcagcagtgtctcgatgtggtgagaatttgcgaggttttgaggttaagacagggccatttcccgggtttcctacagatctccaaccgcaaacaatggaactgctaaccacttggtttaagtcctgtagaagtctctatttgaaaagcgcatggctcatgtctgtgctctgctctggtttcgggaaagataatagaaatggtttgtctggttcctgccttgctgcaactgacctcagaggtgggatatcattggtattagctgcattggctgcagaaggtactactgagatcagcggtgttgctcatattgtggttatgagaatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

340

Amino Acids

36.76

Weight (kDa)

8.78

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001544)

Species	Orthologous Gene IDs
malus_domestica	MD03G1241800.v1.1
prunus_persica	Prupe.4G167100_v2.0.a1 Prupe.4G167100_v2.0.a1
pyrus_communis	pycom03g18890
rosa_chinensis	RchiOBHm_Chr5g0030831 RchiOBHm_Chr5g0031211 RchiOBHm_Chr5g0031411 RchiOBHm_Chr7g0194341
rosa_laevigata	RLG00000002889 RLG00000009452 RLG00000010063 RLG00000020938 RLG00000025330 RLG00000029419 RLG00000033292
rosa_multiflora	Rmu_sc0002426.1_g000013 Rmu_sc0002505.1_g000024 Rmu_sc0004790.1_g000012 Rmu_sc0005543.1_g000001 Rmu_sc0014478.1_g000005 Rmu_sc0014478.1_g000006
rosa_roxburghii	Rroxscaffold_1G00039380 Rroxscaffold_1G00049410 Rroxscaffold_4G00315890
rosa_rugosa	Rorug05G0122800 Rorug05G0125100
rosa_samantha	Rh1BG113100 Rh1CG264100 Rh2BG469500 Rh2DG478900 Rh5AG213800 Rh5AG217800 Rh5BG213000 Rh5BG213100 Rh5BG217500 Rh5CG236700 Rh5CG239700 Rh5CG241300 Rh5DG217500 Rh5DG221000 Rh5DG222900 Rh5DG281900 Rh5DG502600 Rh6BG212100 Rh7AG059300 Rh7CG251400
rosa_wichuraiana	Rw0G012990 Rw0G015960 Rw5G019540 Rw5G019900 Rw5G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	188
Acc36I	ACCTGC	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	437
AccBSI	CCGCTC	1 cut(s)	435
AccII	CGCG	2 cut(s)	152, 361
AciI	CCGC	9 cut(s)	20, 147, 150, 152, 242, 359, 435, 784, 992
AclWI	GGATC	5 cut(s)	16, 196, 287, 320, 405
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	723
AcyI	GRCGYC	1 cut(s)	185
AfaI	GTAC	1 cut(s)	978
AfiI	CCNNNNNNNGG	4 cut(s)	59, 523, 546, 760
AgsI	TTSAA	2 cut(s)	405, 840
AhdI	GACNNNNNGTC	1 cut(s)	108
AluBI	AGCT	4 cut(s)	324, 349, 665, 958
AluI	AGCT	4 cut(s)	324, 349, 665, 958
Alw21I	GWGCWC	1 cut(s)	866
Alw26I	GTCTC	2 cut(s)	713, 835
AlwI	GGATC	5 cut(s)	16, 196, 287, 320, 405
Ama87I	CYCGRG	1 cut(s)	760
AoxI	GGCC	4 cut(s)	153, 339, 641, 751
ApeKI	GCWGC	5 cut(s)	17, 550, 919, 958, 967
ApoI	RAATTY	1 cut(s)	723
Asp700I	GAANNNNTTC	1 cut(s)	539
AspLEI	GCGC	1 cut(s)	847
AspS9I	GGNCC	3 cut(s)	45, 641, 751
AsuC2I	CCSGG	3 cut(s)	343, 761, 762
AsuHPI	GGTGA	5 cut(s)	3, 30, 34, 42, 730
AvaI	CYCGRG	1 cut(s)	760
AvaII	GGWCC	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	437
Bbv12I	GWGCWC	1 cut(s)	866
BbvI	GCAGC	5 cut(s)	29, 537, 906, 945, 954
BccI	CCATC	4 cut(s)	291, 303, 321, 559
BceAI	ACGGC	2 cut(s)	116, 157
BcnI	CCSGG	3 cut(s)	343, 761, 762
BcoDI	GTCTC	2 cut(s)	713, 835
BfaI	CTAG	3 cut(s)	113, 305, 518
BfmI	CTRYAG	3 cut(s)	770, 822, 968
BfuAI	ACCTGC	1 cut(s)	235
BglI	GCCNNNNNGGC	1 cut(s)	152
BglII	AGATCT	2 cut(s)	445, 774
BisI	GCNGC	9 cut(s)	18, 147, 150, 153, 359, 551, 920, 959, 968
BlsI	GCNGC	9 cut(s)	19, 148, 151, 154, 360, 552, 921, 960, 969
Bme1390I	CCNGG	3 cut(s)	343, 761, 762
Bme18I	GGWCC	1 cut(s)	45
BmeRI	GACNNNNNGTC	1 cut(s)	108
BmeT110I	CYCGRG	1 cut(s)	760
BmgT120I	GGNCC	3 cut(s)	45, 641, 751
BmiI	GGNNCC	4 cut(s)	357, 439, 642, 909
BmrFI	CCNGG	3 cut(s)	343, 761, 762
BmsI	GCATC	1 cut(s)	45
BplI	GAGNNNNNCTC	2 cut(s)	435, 467
BpuEI	CTTGAG	1 cut(s)	210
BpuMI	CCSGG	3 cut(s)	343, 761, 762
BsaBI	GATNNNNATC	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	185
BsaJI	CCNNGG	4 cut(s)	41, 150, 342, 760
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 523, 546, 760
Bse3DI	GCAATG	1 cut(s)	260
Bse8I	GATNNNNATC	1 cut(s)	278
BseDI	CCNNGG	4 cut(s)	41, 150, 342, 760
BseGI	GGATG	2 cut(s)	302, 314
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	4 cut(s)	59, 523, 546, 760
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	4 cut(s)	171, 374, 945, 974
BseX3I	CGGCCG	1 cut(s)	339
BseXI	GCAGC	5 cut(s)	29, 537, 906, 945, 954
BseYI	CCCAGC	1 cut(s)	58
Bsh1236I	CGCG	2 cut(s)	152, 361
Bsh1285I	CGRYCG	2 cut(s)	139, 342
BshFI	GGCC	4 cut(s)	155, 341, 643, 753
BshNI	GGYRCC	1 cut(s)	437
BsiEI	CGRYCG	2 cut(s)	139, 342
BsiHKAI	GWGCWC	1 cut(s)	866
BsiHKCI	CYCGRG	1 cut(s)	760
BsiSI	CCGG	4 cut(s)	342, 414, 441, 761
BslI	CCNNNNNNNGG	4 cut(s)	59, 523, 546, 760
BsmAI	GTCTC	2 cut(s)	713, 835
BsnI	GGCC	4 cut(s)	155, 341, 643, 753
BsoBI	CYCGRG	1 cut(s)	760
Bsp1286I	GDGCHC	1 cut(s)	866
BspACI	CCGC	9 cut(s)	20, 147, 150, 152, 242, 359, 435, 784, 992
BspANI	GGCC	4 cut(s)	155, 341, 643, 753
BspCNI	CTCAG	4 cut(s)	170, 375, 944, 975
BspFNI	CGCG	2 cut(s)	152, 361
BspLI	GGNNCC	4 cut(s)	357, 439, 642, 909
BspMAI	CTGCAG	1 cut(s)	972
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	5 cut(s)	16, 196, 287, 320, 405
BspT107I	GGYRCC	1 cut(s)	437
BsrBI	CCGCTC	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	260
BssECI	CCNNGG	4 cut(s)	41, 150, 342, 760
BssNI	GRCGYC	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	581
Bst6I	CTCTTC	1 cut(s)	474
BstACI	GRCGYC	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	967
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	4 cut(s)	157, 383, 931, 983
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	302, 314
BstFNI	CGCG	2 cut(s)	152, 361
BstHHI	GCGC	1 cut(s)	847
BstMAI	GTCTC	2 cut(s)	713, 835
BstMCI	CGRYCG	2 cut(s)	139, 342
BstMWI	GCNNNNNNNGC	8 cut(s)	152, 330, 355, 423, 432, 559, 964, 967
BstNSI	RCATGY	1 cut(s)	557
BstSCI	CCNGG	3 cut(s)	341, 759, 760
BstSFI	CTRYAG	3 cut(s)	770, 822, 968
BstUI	CGCG	2 cut(s)	152, 361
BstV1I	GCAGC	5 cut(s)	29, 537, 906, 945, 954
BstX2I	RGATCY	3 cut(s)	410, 445, 774
BstYI	RGATCY	3 cut(s)	410, 445, 774
BstZI	CGGCCG	1 cut(s)	339
BsuRI	GGCC	4 cut(s)	155, 341, 643, 753
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	302, 314
BtsI	GCAGTG	2 cut(s)	126, 710
BtsIMutI	CAGTG	2 cut(s)	126, 710
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	419
CfoI	GCGC	1 cut(s)	847
Cfr13I	GGNCC	3 cut(s)	45, 641, 751
Cfr42I	CCGCGG	1 cut(s)	153
Cfr9I	CCCGGG	1 cut(s)	760
Csp6I	GTAC	1 cut(s)	977
CviAII	CATG	5 cut(s)	211, 554, 693, 848, 855
CviQI	GTAC	1 cut(s)	977
DdeI	CTNAG	4 cut(s)	157, 383, 931, 983
DriI	GACNNNNNGTC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	339
EagI	CGGCCG	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	474
Eam1105I	GACNNNNNGTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	474
EclXI	CGGCCG	1 cut(s)	339
Eco32I	GATATC	1 cut(s)	944
Eco47I	GGWCC	1 cut(s)	45
Eco52I	CGGCCG	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	760
EcoO109I	RGGNCCY	2 cut(s)	45, 641
EcoRV	GATATC	1 cut(s)	944
EcoT22I	ATGCAT	1 cut(s)	471
FaeI	CATG	5 cut(s)	214, 557, 696, 851, 858
FatI	CATG	5 cut(s)	210, 553, 692, 847, 854
FauI	CCCGC	1 cut(s)	249
FauNDI	CATATG	1 cut(s)	465
Fnu4HI	GCNGC	9 cut(s)	18, 147, 150, 153, 359, 551, 920, 959, 968
FokI	GGATG	2 cut(s)	309, 321
Fsp4HI	GCNGC	9 cut(s)	18, 147, 150, 153, 359, 551, 920, 959, 968
FspBI	CTAG	3 cut(s)	113, 305, 518
GlaI	GCGC	1 cut(s)	846
GluI	GCNGC	9 cut(s)	18, 147, 150, 153, 359, 551, 920, 959, 968
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	4 cut(s)	155, 341, 643, 753
HapII	CCGG	4 cut(s)	342, 414, 441, 761
HhaI	GCGC	1 cut(s)	847
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	5 cut(s)	214, 557, 696, 851, 858
Hin6I	GCGC	1 cut(s)	845
HinP1I	GCGC	1 cut(s)	845
HindIII	AAGCTT	1 cut(s)	663
HinfI	GANTC	2 cut(s)	167, 301
HpaII	CCGG	4 cut(s)	342, 414, 441, 761
HphI	GGTGA	5 cut(s)	3, 30, 34, 42, 730
Hpy188I	TCNGA	5 cut(s)	160, 201, 355, 629, 934
Hpy188III	TCNNGA	6 cut(s)	95, 189, 283, 457, 710, 879
Hpy99I	CGWCG	2 cut(s)	137, 178
HpyAV	CCTTC	3 cut(s)	550, 646, 967
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	6 cut(s)	469, 553, 692, 922, 961, 970
HpyF10VI	GCNNNNNNNGC	8 cut(s)	152, 330, 355, 423, 432, 559, 964, 967
HpyF3I	CTNAG	4 cut(s)	157, 383, 931, 983
HpySE526I	ACGT	1 cut(s)	185
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	5 cut(s)	214, 557, 696, 851, 858
HspAI	GCGC	1 cut(s)	845
KspI	CCGCGG	1 cut(s)	153
LmnI	GCTCC	5 cut(s)	330, 346, 355, 432, 655
Lsp1109I	GCAGC	5 cut(s)	29, 537, 906, 945, 954
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	3 cut(s)	113, 305, 518
MaeII	ACGT	1 cut(s)	185
MbiI	CCGCTC	1 cut(s)	435
MboII	GAAGA	7 cut(s)	37, 214, 399, 402, 417, 420, 491
MflI	RGATCY	3 cut(s)	410, 445, 774
MhlI	GDGCHC	1 cut(s)	866
MluCI	AATT	1 cut(s)	723
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	2 cut(s)	528, 804
Mph1103I	ATGCAT	1 cut(s)	471
MroXI	GAANNNNTTC	1 cut(s)	539
MseI	TTAA	3 cut(s)	472, 743, 815
MslI	CAYNNNNRTG	3 cut(s)	265, 691, 859
MspA1I	CMGCKG	3 cut(s)	20, 152, 992
MspI	CCGG	4 cut(s)	342, 414, 441, 761
MspR9I	CCNGG	3 cut(s)	343, 761, 762
MvnI	CGCG	2 cut(s)	152, 361
MwoI	GCNNNNNNNGC	8 cut(s)	152, 330, 355, 423, 432, 559, 964, 967
NciI	CCSGG	3 cut(s)	343, 761, 762
NdeI	CATATG	1 cut(s)	465
NlaIII	CATG	5 cut(s)	214, 557, 696, 851, 858
NlaIV	GGNNCC	4 cut(s)	357, 439, 642, 909
NsiI	ATGCAT	1 cut(s)	471
NspI	RCATGY	1 cut(s)	557
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	539
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	9 cut(s)	19, 148, 151, 154, 360, 552, 921, 960, 969
Ple19I	CGATCG	1 cut(s)	139
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PpuMI	RGGWCCY	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	58
PspN4I	GGNNCC	4 cut(s)	357, 439, 642, 909
PspPI	GGNCC	3 cut(s)	45, 641, 751
PspPPI	RGGWCCY	1 cut(s)	45
PstI	CTGCAG	1 cut(s)	972
PsuI	RGATCY	3 cut(s)	410, 445, 774
PvuI	CGATCG	1 cut(s)	139
RsaI	GTAC	1 cut(s)	978
RsaNI	GTAC	1 cut(s)	977
RseI	CAYNNNNRTG	3 cut(s)	265, 691, 859
SacII	CCGCGG	1 cut(s)	153
SaqAI	TTAA	3 cut(s)	472, 743, 815
SatI	GCNGC	9 cut(s)	18, 147, 150, 153, 359, 551, 920, 959, 968
Sau96I	GGNCC	3 cut(s)	45, 641, 751
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	3 cut(s)	343, 761, 762
SduI	GDGCHC	1 cut(s)	866
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	3 cut(s)	770, 822, 968
Sfr303I	CCGCGG	1 cut(s)	153
SgrBI	CCGCGG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	45
SmaI	CCCGGG	1 cut(s)	762
SmiMI	CAYNNNNRTG	3 cut(s)	265, 691, 859
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	1 cut(s)	723
SsiI	CCGC	9 cut(s)	20, 147, 150, 152, 242, 359, 435, 784, 992
SspMI	CTAG	3 cut(s)	113, 305, 518
StyD4I	CCNGG	3 cut(s)	341, 759, 760
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	4 cut(s)	135, 282, 621, 711
TasI	AATT	1 cut(s)	723
TauI	GCSGC	4 cut(s)	149, 152, 155, 361
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	3 cut(s)	472, 743, 815
Tru9I	TTAA	3 cut(s)	472, 743, 815
TscAI	CASTG	2 cut(s)	133, 710
TseI	GCWGC	5 cut(s)	17, 550, 919, 958, 967
TspDTI	ATGAA	2 cut(s)	208, 361
TspGWI	ACGGA	1 cut(s)	445
TspMI	CCCGGG	1 cut(s)	760
TspRI	CASTG	2 cut(s)	133, 710
VpaK11BI	GGWCC	1 cut(s)	45
XapI	RAATTY	1 cut(s)	723
XceI	RCATGY	1 cut(s)	557
XmaI	CCCGGG	1 cut(s)	760
XmnI	GAANNNNTTC	1 cut(s)	539
XspI	CTAG	3 cut(s)	113, 305, 518
ZraI	GACGTC	1 cut(s)	186
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.